Wall clock time and date at job start Wed Apr 1 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47077 * 269.99900 * 3 2 1 5 5 H 1.48500 * 109.47106 * 30.00248 * 3 2 1 6 6 H 1.48498 * 109.46821 * 150.00261 * 3 2 1 7 7 C 1.38811 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00284 * 195.66432 * 7 2 1 9 9 N 1.36936 * 119.99742 * 15.67411 * 7 2 1 10 10 C 1.47603 * 118.64802 * 26.45389 * 9 7 2 11 11 C 1.53951 * 112.14321 * 137.88852 * 10 9 7 12 12 C 1.50882 * 110.09766 * 319.44192 * 11 10 9 13 13 C 1.52573 * 109.35836 * 91.88272 * 12 11 10 14 14 H 1.09000 * 108.39009 * 36.14974 * 13 12 11 15 15 N 1.46501 * 108.51191 * 153.73542 * 13 12 11 16 16 C 1.34769 * 119.99925 * 209.76360 * 15 13 12 17 17 O 1.21582 * 120.00204 * 0.02562 * 16 15 13 18 18 C 1.47517 * 120.00024 * 180.02562 * 16 15 13 19 19 C 1.36825 * 126.94274 * 180.02562 * 18 16 15 20 20 C 1.41262 * 103.84272 * 179.73611 * 19 18 16 21 21 C 1.50704 * 126.70100 * 180.23755 * 20 19 18 22 22 F 1.39905 * 109.46858 * 90.00111 * 21 20 19 23 23 F 1.39898 * 109.46802 * 209.99668 * 21 20 19 24 24 F 1.39898 * 109.47183 * 330.00083 * 21 20 19 25 25 N 1.30126 * 106.59068 * 0.26007 * 20 19 18 26 26 O 1.20878 * 111.98279 * 0.02562 * 25 20 19 27 27 C 1.47102 * 114.32116 * 274.98684 * 13 12 11 28 28 C 1.44584 * 118.64160 * 206.47996 * 9 7 2 29 29 H 0.97003 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08991 * 108.95200 * 258.57910 * 10 9 7 31 31 H 1.09001 * 108.94484 * 17.29682 * 10 9 7 32 32 H 1.09009 * 109.36180 * 79.63080 * 11 10 9 33 33 H 1.08996 * 109.37069 * 199.37525 * 11 10 9 34 34 H 1.08998 * 109.49010 * 331.91897 * 12 11 10 35 35 H 1.08997 * 109.49184 * 211.84520 * 12 11 10 36 36 H 0.97002 * 119.99538 * 29.76820 * 15 13 12 37 37 H 1.07997 * 128.07771 * 359.97438 * 19 18 16 38 38 H 1.09005 * 109.32028 * 183.06328 * 27 13 12 39 39 H 1.08994 * 109.32782 * 302.71418 * 27 13 12 40 40 H 1.08999 * 109.44853 * 150.66492 * 28 9 7 41 41 H 1.09000 * 109.42497 * 30.72570 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0601 -1.2194 0.2531 9 7 1.3637 -2.3661 -0.3193 10 6 0.1790 -2.2993 -1.1972 11 6 0.1703 -3.4255 -2.2468 12 6 1.5612 -3.6367 -2.7921 13 6 2.2699 -4.7080 -1.9687 14 1 1.5368 -5.4618 -1.6813 15 7 3.2853 -5.3457 -2.8104 16 6 3.6234 -6.6332 -2.5998 17 8 3.0855 -7.2656 -1.7116 18 6 4.6463 -7.2752 -3.4470 19 6 5.0952 -8.5648 -3.3596 20 6 6.0531 -8.6599 -4.3935 21 6 6.8667 -9.8748 -4.7585 22 9 6.1746 -10.6305 -5.7110 23 9 8.0967 -9.4704 -5.2882 24 9 7.0838 -10.6514 -3.6152 25 7 6.0961 -7.4935 -4.9687 26 8 5.3293 -6.7096 -4.4600 27 6 2.9225 -4.2031 -0.7509 28 6 1.8695 -3.6098 0.2172 29 1 -0.4850 0.8401 0.0004 30 1 -0.7197 -2.3786 -0.5856 31 1 0.1732 -1.3381 -1.7112 32 1 -0.1806 -4.3480 -1.7842 33 1 -0.4985 -3.1534 -3.0634 34 1 2.1207 -2.7032 -2.7329 35 1 1.4993 -3.9588 -3.8315 36 1 3.7142 -4.8412 -3.5192 37 1 4.7862 -9.3320 -2.6652 38 1 3.4464 -5.0213 -0.2567 39 1 3.6386 -3.4269 -1.0207 40 1 1.0469 -4.3152 0.3354 41 1 2.3314 -3.4250 1.1870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052464668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:23 Heat of formation + Delta-G solvation = -110.548816 kcal Electronic energy + Delta-G solvation = -30485.236774 eV Core-core repulsion = 25568.073308 eV Total energy + Delta-G solvation = -4917.163466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.45016 -48.96535 -48.94989 -46.66236 -41.27693 -39.24959 -36.58396 -35.93449 -34.32154 -33.51109 -33.26030 -31.59188 -28.53931 -27.96739 -26.21167 -25.47085 -24.65835 -24.16810 -22.15525 -21.59933 -21.07438 -20.17806 -19.99785 -19.59783 -19.12016 -18.57340 -18.39185 -17.46899 -17.35626 -16.91146 -16.10117 -15.87570 -15.80528 -15.73658 -15.64412 -15.35219 -15.25624 -15.21751 -15.06878 -15.06547 -14.90516 -14.32931 -14.13127 -13.83886 -13.57848 -13.35640 -13.14325 -12.97888 -12.70620 -12.39719 -12.28215 -12.17245 -12.03336 -11.73037 -11.60120 -11.48584 -11.34445 -11.30236 -11.22887 -10.41606 -10.24293 -8.61456 -7.80949 -5.26833 -0.62308 0.19190 0.91482 1.19238 1.49363 1.51289 1.58926 1.74559 1.91815 2.08944 2.47784 2.55420 3.00680 3.22446 3.32045 3.33227 3.60739 3.68607 3.72343 3.82108 4.14001 4.34000 4.41759 4.47849 4.50019 4.69032 4.81047 4.94964 5.02860 5.16767 5.19516 5.25519 5.33161 5.45921 5.53472 5.64329 5.73955 5.88022 6.14738 6.45431 6.47010 6.86369 7.24052 8.00353 8.38646 9.23970 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.002116 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.911901 B =13226.685984 C =13603.745905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.960 3.040 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.168 3.832 14 H 0.076 0.924 15 N -0.695 5.695 16 C 0.608 3.392 17 O -0.535 6.535 18 C -0.065 4.065 19 C -0.103 4.103 20 C -0.092 4.092 21 C 0.567 3.433 22 F -0.163 7.163 23 F -0.167 7.167 24 F -0.154 7.154 25 N -0.303 5.303 26 O 0.164 5.836 27 C -0.140 4.140 28 C 0.158 3.842 29 H 0.247 0.753 30 H -0.008 1.008 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.418 0.582 37 H 0.217 0.783 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -19.064 -11.684 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.789 3.211 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.324 5.324 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.065 3.935 14 H 0.094 0.906 15 N -0.346 5.346 16 C 0.391 3.609 17 O -0.412 6.412 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.249 4.249 21 C 0.511 3.489 22 F -0.144 7.144 23 F -0.149 7.149 24 F -0.135 7.135 25 N 0.008 4.992 26 O 0.076 5.924 27 C -0.181 4.181 28 C 0.030 3.970 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.255 0.745 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.251 -18.995 -12.092 25.171 hybrid contribution 0.212 0.817 0.470 0.966 sum 11.463 -18.177 -11.622 24.431 Atomic orbital electron populations 1.70227 1.06480 1.25522 1.55952 1.25699 0.95926 1.01152 1.01503 0.85379 0.78062 0.80166 0.77501 1.21151 1.22703 1.19632 1.19478 0.92528 0.86028 1.40871 0.91692 1.43876 1.32343 1.02233 1.53961 1.20825 0.87020 0.96236 0.89925 1.21825 0.96936 0.99178 0.98885 1.21167 0.96005 0.98262 0.98814 1.19943 0.88957 0.94656 0.89949 0.90557 1.46233 1.41295 1.10685 1.36370 1.16453 0.80179 0.82282 0.82032 1.90909 1.53511 1.64372 1.32430 1.24236 1.00205 0.94293 0.94351 1.22950 0.94032 0.97289 0.98241 1.23539 1.04770 0.95438 1.01172 1.16462 0.76902 0.80489 0.75016 1.93284 1.79121 1.77239 1.64742 1.93263 1.44514 1.90448 1.86626 1.93281 1.94717 1.75812 1.49733 1.73813 1.07929 1.00617 1.16874 1.85041 1.37449 1.34291 1.35572 1.21664 0.99718 0.99841 0.96922 1.20675 0.94694 0.87309 0.94282 0.94334 0.99035 0.93826 0.92297 0.90516 0.91900 0.89436 0.74467 0.76589 0.91947 0.92405 0.94132 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.59 11.01 21.65 0.24 -53.35 16 2 C -0.05 -2.55 4.87 84.86 0.41 -2.14 16 3 Si 0.96 43.53 29.58 68.60 2.03 45.55 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.26 -13.40 9.44 84.03 0.79 -12.61 16 8 H 0.07 3.31 7.88 -2.91 -0.02 3.29 16 9 N -0.60 -27.90 2.27 -698.38 -1.59 -29.49 16 10 C 0.18 8.30 4.66 86.49 0.40 8.70 16 11 C -0.13 -4.16 5.71 30.23 0.17 -3.99 16 12 C -0.10 -2.88 5.00 29.76 0.15 -2.73 16 13 C 0.17 4.48 1.96 43.02 0.08 4.57 16 14 H 0.08 2.20 6.65 -2.39 -0.02 2.18 16 15 N -0.70 -14.26 4.88 -455.26 -2.22 -16.48 16 16 C 0.61 13.12 7.66 86.69 0.66 13.79 16 17 O -0.53 -14.94 16.42 -3.97 -0.07 -15.00 16 18 C -0.07 -1.13 7.29 24.39 0.18 -0.96 16 19 C -0.10 -1.58 10.65 22.68 0.24 -1.34 16 20 C -0.09 -1.56 6.63 43.56 0.29 -1.27 16 21 C 0.57 8.88 3.56 71.24 0.25 9.14 16 22 F -0.16 -2.60 17.30 44.97 0.78 -1.82 16 23 F -0.17 -2.94 17.27 44.97 0.78 -2.16 16 24 F -0.15 -2.23 17.08 44.97 0.77 -1.46 16 25 N -0.30 -5.72 12.00 -48.88 -0.59 -6.31 16 26 O 0.16 2.78 11.04 65.88 0.73 3.51 16 27 C -0.14 -4.40 5.20 29.40 0.15 -4.25 16 28 C 0.16 6.16 5.66 87.37 0.49 6.65 16 29 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 30 H -0.01 -0.43 8.03 -2.39 -0.02 -0.45 16 31 H 0.04 2.22 6.33 -2.39 -0.02 2.20 16 32 H 0.06 1.80 7.31 -2.38 -0.02 1.78 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 2.06 7.48 -2.39 -0.02 2.04 16 35 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 36 H 0.42 6.49 8.44 -92.71 -0.78 5.71 16 37 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.06 1.88 7.95 -2.38 -0.02 1.86 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 41 H 0.04 1.58 7.99 -2.39 -0.02 1.56 16 Total: -1.00 -62.05 355.27 5.47 -56.58 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.32 Total: 6.85 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.29 Total: 13.57 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.16 Total: -105.62 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.66 Total: -11.49 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 2.32 Total: -5.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -62.05 5.47 -56.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052464668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.966 kcal (2) G-P(sol) polarization free energy of solvation -62.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds