Wall clock time and date at job start Wed Apr 1 2020 04:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00500 * 2 1 4 4 H 1.48504 * 109.47002 * 270.00068 * 3 2 1 5 5 H 1.48500 * 109.46940 * 29.99658 * 3 2 1 6 6 H 1.48498 * 109.47407 * 149.99604 * 3 2 1 7 7 C 1.38816 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 195.67071 * 7 2 1 9 9 N 1.36934 * 119.99718 * 15.66680 * 7 2 1 10 10 C 1.47601 * 118.64614 * 26.46363 * 9 7 2 11 11 C 1.53952 * 112.14325 * 137.88746 * 10 9 7 12 12 C 1.50882 * 110.09591 * 319.43984 * 11 10 9 13 13 C 1.52565 * 109.36165 * 91.88440 * 12 11 10 14 14 H 1.08996 * 108.39014 * 36.14966 * 13 12 11 15 15 N 1.46492 * 108.51628 * 153.73653 * 13 12 11 16 16 C 1.34779 * 120.00003 * 209.76478 * 15 13 12 17 17 O 1.21604 * 119.99919 * 0.02562 * 16 15 13 18 18 C 1.47422 * 119.99862 * 179.97438 * 16 15 13 19 19 C 1.36096 * 126.44838 * 179.97438 * 18 16 15 20 20 O 1.34256 * 106.94857 * 180.02562 * 19 18 16 21 21 C 1.34052 * 108.22943 * 0.02562 * 20 19 18 22 22 C 1.50696 * 125.37831 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.46859 * 269.96905 * 22 21 20 24 24 F 1.39901 * 109.47219 * 29.97173 * 22 21 20 25 25 F 1.39903 * 109.47351 * 149.97529 * 22 21 20 26 26 N 1.29936 * 109.24054 * 359.97438 * 21 20 19 27 27 C 1.47094 * 114.32376 * 274.99074 * 13 12 11 28 28 C 1.44584 * 118.64182 * 206.48351 * 9 7 2 29 29 H 0.97008 * 119.99677 * 0.02562 * 1 2 3 30 30 H 1.08998 * 108.95138 * 258.57623 * 10 9 7 31 31 H 1.09005 * 108.94618 * 17.29323 * 10 9 7 32 32 H 1.08996 * 109.36649 * 79.62651 * 11 10 9 33 33 H 1.08996 * 109.37059 * 199.37850 * 11 10 9 34 34 H 1.09002 * 109.48713 * 331.91902 * 12 11 10 35 35 H 1.08995 * 109.49065 * 211.85190 * 12 11 10 36 36 H 0.97001 * 120.00021 * 29.76516 * 15 13 12 37 37 H 1.07999 * 126.52528 * 0.03001 * 19 18 16 38 38 H 1.09003 * 109.32895 * 183.06337 * 27 13 12 39 39 H 1.09000 * 109.33028 * 302.71110 * 27 13 12 40 40 H 1.09004 * 109.44714 * 150.66644 * 28 9 7 41 41 H 1.08999 * 109.42915 * 30.73480 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2521 9 7 1.3636 -2.3659 -0.3213 10 6 0.1789 -2.2983 -1.1991 11 6 0.1701 -3.4236 -2.2497 12 6 1.5610 -3.6345 -2.7950 13 6 2.2697 -4.7064 -1.9726 14 1 1.5367 -5.4604 -1.6859 15 7 3.2850 -5.3435 -2.8147 16 6 3.6232 -6.6312 -2.6051 17 8 3.0850 -7.2644 -1.7173 18 6 4.6446 -7.2725 -3.4529 19 6 5.0844 -8.5569 -3.3576 20 8 6.0109 -8.7254 -4.3144 21 6 6.1384 -7.5703 -4.9827 22 6 7.0753 -7.3298 -6.1383 23 9 8.3051 -6.8712 -5.6539 24 9 7.2667 -8.5248 -6.8401 25 9 6.5239 -6.3698 -6.9937 26 7 5.3258 -6.6913 -4.4775 27 6 2.9223 -4.2026 -0.7544 28 6 1.8693 -3.6100 0.2142 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7198 -2.3780 -0.5876 31 1 0.1731 -1.3366 -1.7124 32 1 -0.1808 -4.3464 -1.7879 33 1 -0.4986 -3.1508 -3.0660 34 1 2.1206 -2.7010 -2.7351 35 1 1.4992 -3.9556 -3.8348 36 1 3.7141 -4.8385 -3.5231 37 1 4.7513 -9.2993 -2.6474 38 1 3.4461 -5.0212 -0.2608 39 1 3.6385 -3.4263 -1.0235 40 1 1.0467 -4.3155 0.3319 41 1 2.3312 -3.4261 1.1842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052526287.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:45 Heat of formation + Delta-G solvation = -130.056668 kcal Electronic energy + Delta-G solvation = -30662.606309 eV Core-core repulsion = 25744.596920 eV Total energy + Delta-G solvation = -4918.009390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.88894 -48.41959 -48.37897 -44.25138 -39.96209 -37.73953 -35.70917 -34.89225 -32.54097 -31.98192 -31.60675 -30.01872 -27.41064 -26.25307 -24.99032 -23.86804 -23.13811 -22.63790 -21.05186 -20.23585 -19.48448 -19.36790 -19.17205 -18.98275 -17.80228 -17.40923 -16.88575 -16.72052 -15.98644 -15.22277 -15.17441 -15.13762 -14.84316 -14.76712 -14.55835 -14.48829 -14.47925 -14.19736 -13.99029 -13.59077 -13.47111 -13.36760 -12.84120 -12.58096 -12.14245 -11.99758 -11.69842 -11.42820 -11.26611 -10.85396 -10.79037 -10.53518 -10.33440 -10.20692 -10.06594 -9.98419 -9.80597 -9.75827 -9.61888 -8.93876 -8.39471 -6.66457 -5.77406 -3.21219 0.30520 0.95830 1.14406 2.07369 2.63832 2.99076 3.02827 3.37636 3.45168 3.45915 3.48343 3.54187 4.01414 4.25129 4.50642 4.57353 4.86424 5.07085 5.19551 5.34321 5.44881 5.59848 5.69332 5.99720 6.02730 6.11713 6.28375 6.43358 6.45365 6.50468 6.60992 6.72252 6.76022 6.82240 6.89121 7.02538 7.43529 7.50851 7.71347 7.83634 8.07439 8.47986 9.25118 9.91800 10.36829 11.29888 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.016237 B = 0.002430 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.057866 B =11518.845945 C =12375.912875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.113 4.113 13 C 0.160 3.840 14 H 0.078 0.922 15 N -0.703 5.703 16 C 0.597 3.403 17 O -0.532 6.532 18 C -0.063 4.063 19 C 0.053 3.947 20 O -0.168 6.168 21 C 0.091 3.909 22 C 0.588 3.412 23 F -0.152 7.152 24 F -0.156 7.156 25 F -0.141 7.141 26 N -0.388 5.388 27 C -0.156 4.156 28 C 0.163 3.837 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.405 0.595 37 H 0.248 0.752 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -18.016 -12.606 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.180 4.180 12 C -0.151 4.151 13 C 0.058 3.942 14 H 0.096 0.904 15 N -0.352 5.352 16 C 0.381 3.619 17 O -0.409 6.409 18 C -0.185 4.185 19 C -0.021 4.021 20 O -0.052 6.052 21 C -0.119 4.119 22 C 0.532 3.468 23 F -0.133 7.133 24 F -0.137 7.137 25 F -0.122 7.122 26 N -0.120 5.120 27 C -0.198 4.198 28 C 0.034 3.966 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.240 0.760 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.175 -17.697 -12.222 24.237 hybrid contribution 0.900 0.472 -0.297 1.059 sum 12.076 -17.225 -12.519 24.479 Atomic orbital electron populations 1.70072 1.05195 1.25384 1.54185 1.25027 0.95258 0.98320 1.00798 0.86325 0.79139 0.83862 0.77651 1.21496 1.21827 1.20492 1.19215 0.92401 0.85000 1.42140 0.91711 1.43686 1.32348 1.01838 1.53302 1.21034 0.88633 0.95565 0.89572 1.21982 0.95023 1.01030 0.99925 1.21261 0.97703 0.99136 0.96962 1.20177 0.88834 0.94788 0.90381 0.90383 1.46378 1.41553 1.10952 1.36343 1.16584 0.80530 0.82469 0.82357 1.90853 1.53772 1.63997 1.32324 1.22228 1.03737 0.93468 0.99074 1.25784 0.87296 0.98869 0.90159 1.84403 1.48048 1.35634 1.37076 1.25443 1.03406 0.82395 1.00679 1.15956 0.77189 0.75188 0.78494 1.93333 1.43379 1.88820 1.87785 1.93306 1.95127 1.45706 1.79584 1.93339 1.85292 1.63445 1.70074 1.70672 1.04178 1.30334 1.06829 1.21902 1.00967 1.00041 0.96850 1.20560 0.93821 0.88287 0.93920 0.93697 0.95618 0.90668 0.93354 0.92445 0.89907 0.92999 0.75964 0.73568 0.92855 0.91749 0.94715 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.01 55.49 0.61 -25.07 16 2 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 3 Si 0.90 21.41 29.58 -169.99 -5.03 16.39 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.83 9.44 -15.06 -0.14 -6.97 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.11 2.27 -172.08 -0.39 -14.51 16 10 C 0.18 4.06 4.66 -2.94 -0.01 4.05 16 11 C -0.14 -2.52 5.71 -27.30 -0.16 -2.68 16 12 C -0.11 -1.87 5.00 -28.02 -0.14 -2.01 16 13 C 0.16 2.61 1.96 -70.99 -0.14 2.47 16 14 H 0.08 1.36 6.65 -51.93 -0.35 1.01 16 15 N -0.70 -9.93 4.88 -57.90 -0.28 -10.21 16 16 C 0.60 8.35 7.66 -12.52 -0.10 8.25 16 17 O -0.53 -8.68 16.39 5.27 0.09 -8.59 16 18 C -0.06 -0.71 6.99 -83.02 -0.58 -1.29 16 19 C 0.05 0.44 11.95 29.96 0.36 0.79 16 20 O -0.17 -1.43 10.70 6.51 0.07 -1.36 16 21 C 0.09 0.87 7.53 -13.08 -0.10 0.77 16 22 C 0.59 4.81 3.57 36.00 0.13 4.94 16 23 F -0.15 -1.27 17.30 2.25 0.04 -1.23 16 24 F -0.16 -1.17 17.28 2.25 0.04 -1.13 16 25 F -0.14 -1.24 17.23 2.25 0.04 -1.20 16 26 N -0.39 -4.41 10.96 -7.65 -0.08 -4.49 16 27 C -0.16 -2.80 5.19 -28.58 -0.15 -2.95 16 28 C 0.16 3.37 5.66 -4.08 -0.02 3.35 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 31 H 0.07 1.93 6.33 -51.93 -0.33 1.60 16 32 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 35 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.41 5.22 8.34 -40.82 -0.34 4.88 16 37 H 0.25 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.05 0.93 7.95 -51.93 -0.41 0.52 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.69 8.06 -51.93 -0.42 0.28 16 41 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.05 355.85 -5.36 -35.40 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.68 Total: 1.88 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.14 Total: 8.76 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.15 Total: -54.28 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.16 Total: -9.95 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.12 Total: -3.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.05 -5.36 -35.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052526287.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.652 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds