Wall clock time and date at job start Wed Apr 1 2020 04:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48500 * 109.47208 * 274.96998 * 3 2 1 5 5 H 1.48498 * 109.46677 * 34.96529 * 3 2 1 6 6 H 1.48492 * 109.47428 * 154.96545 * 3 2 1 7 7 C 1.38822 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99509 * 195.46739 * 7 2 1 9 9 N 1.36926 * 120.00044 * 15.46504 * 7 2 1 10 10 C 1.47510 * 118.76043 * 26.09994 * 9 7 2 11 11 C 1.53570 * 111.02701 * 138.37200 * 10 9 7 12 12 C 1.51532 * 109.58139 * 320.02049 * 11 10 9 13 13 O 1.42148 * 108.76462 * 91.40450 * 12 11 10 14 14 C 1.38017 * 119.43571 * 272.77607 * 13 12 11 15 15 H 1.08995 * 109.46886 * 303.42383 * 14 13 12 16 16 C 1.52996 * 109.47053 * 183.42880 * 14 13 12 17 17 N 1.46494 * 109.47461 * 65.00006 * 16 14 13 18 18 C 1.34775 * 120.00313 * 179.72524 * 17 16 14 19 19 O 1.21288 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00451 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.75803 * 319.27659 * 20 18 17 22 22 C 1.54116 * 109.76258 * 79.99624 * 20 18 17 23 23 C 1.54917 * 105.89374 * 165.31465 * 22 20 18 24 24 S 1.83173 * 102.71536 * 334.83714 * 23 22 20 25 25 O 1.42099 * 111.27638 * 111.02680 * 24 23 22 26 26 O 1.42105 * 111.27707 * 250.22221 * 24 23 22 27 27 N 1.47985 * 109.76710 * 198.54292 * 20 18 17 28 28 C 1.45127 * 118.75721 * 206.09629 * 9 7 2 29 29 H 0.96998 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.16585 * 17.97197 * 10 9 7 31 31 H 1.09004 * 109.16638 * 258.76722 * 10 9 7 32 32 H 1.08999 * 109.45091 * 199.98573 * 11 10 9 33 33 H 1.09000 * 109.43463 * 80.04454 * 11 10 9 34 34 H 1.08997 * 109.59250 * 331.61682 * 12 11 10 35 35 H 1.09007 * 109.58557 * 211.18634 * 12 11 10 36 36 H 1.09011 * 109.47326 * 304.99883 * 16 14 13 37 37 H 1.09004 * 109.47142 * 185.00278 * 16 14 13 38 38 H 0.97000 * 119.99667 * 359.97438 * 17 16 14 39 39 H 1.08996 * 110.16577 * 284.42482 * 22 20 18 40 40 H 1.08998 * 110.16281 * 46.21231 * 22 20 18 41 41 H 1.08999 * 110.76093 * 93.14537 * 23 22 20 42 42 H 1.08995 * 110.76208 * 216.52880 * 23 22 20 43 43 H 0.97002 * 127.76804 * 16.17808 * 27 20 18 44 44 H 1.08998 * 109.46031 * 149.27126 * 28 9 7 45 45 H 1.09001 * 109.45703 * 29.30756 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3928 2.1070 -1.3948 5 1 1.5041 2.6200 0.8024 6 1 3.5963 1.4120 0.5924 7 6 2.0102 -1.2023 -0.0005 8 1 3.0609 -1.2193 0.2489 9 7 1.3626 -2.3664 -0.3173 10 6 0.1709 -2.3025 -1.1843 11 6 0.1766 -3.4422 -2.2135 12 6 1.5840 -3.6478 -2.7360 13 8 2.2335 -4.6215 -1.9293 14 6 2.8924 -4.2232 -0.7838 15 1 3.6425 -3.4743 -1.0380 16 6 3.5760 -5.4322 -0.1422 17 7 4.6223 -5.9335 -1.0367 18 6 5.3656 -6.9977 -0.6745 19 8 5.1686 -7.5403 0.3922 20 6 6.4416 -7.5138 -1.5949 21 1 6.0862 -7.4933 -2.6252 22 6 7.7043 -6.6402 -1.4618 23 6 8.8481 -7.4432 -2.1302 24 16 8.2659 -9.1736 -1.9820 25 8 7.9261 -9.7139 -3.2517 26 8 9.0475 -9.9023 -1.0452 27 7 6.8018 -8.8984 -1.2170 28 6 1.8747 -3.6167 0.2127 29 1 -0.4850 0.8400 0.0004 30 1 0.1606 -1.3469 -1.7084 31 1 -0.7247 -2.3813 -0.5679 32 1 -0.4844 -3.1866 -3.0417 33 1 -0.1727 -4.3599 -1.7404 34 1 2.1331 -2.7074 -2.6870 35 1 1.5435 -3.9963 -3.7680 36 1 2.8392 -6.2168 0.0308 37 1 4.0212 -5.1362 0.8078 38 1 4.7825 -5.4971 -1.8880 39 1 7.5604 -5.6908 -1.9775 40 1 7.9319 -6.4666 -0.4101 41 1 8.9578 -7.1607 -3.1772 42 1 9.7848 -7.3032 -1.5909 43 1 6.3025 -9.5092 -0.6525 44 1 1.0499 -4.3141 0.3589 45 1 2.3674 -3.4317 1.1673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073893030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:39 Heat of formation + Delta-G solvation = -114.018804 kcal Electronic energy + Delta-G solvation = -29219.376560 eV Core-core repulsion = 24979.363316 eV Total energy + Delta-G solvation = -4240.013244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29126 -39.00179 -37.46159 -36.84653 -36.23056 -35.37861 -34.80156 -32.32049 -32.07386 -31.57515 -29.11171 -27.30938 -25.64080 -25.18568 -23.38149 -22.55918 -21.04203 -20.65302 -19.94000 -19.60748 -18.43867 -17.54265 -17.12007 -16.76072 -16.36557 -16.17546 -15.90534 -15.50245 -15.21708 -15.14633 -14.93204 -14.46169 -13.99200 -13.93883 -13.79003 -13.63009 -13.17801 -13.03028 -12.70331 -12.50287 -12.35740 -12.30221 -12.26048 -12.17276 -11.93109 -11.49714 -11.28484 -11.07533 -11.06430 -10.96595 -10.73083 -10.32893 -10.23879 -9.96327 -9.89727 -9.84984 -9.77690 -9.16167 -8.91975 -8.51820 -6.84891 -5.92098 -3.37540 -0.18283 2.06322 2.35017 2.91908 3.21564 3.27028 3.34718 3.36208 3.54932 3.83765 3.95586 4.04855 4.29049 4.36234 4.40353 4.66002 4.75978 5.01303 5.07609 5.18288 5.25040 5.27407 5.42888 5.50478 5.60704 5.76647 5.86454 5.91230 6.06875 6.14634 6.25943 6.34735 6.45673 6.62465 6.66181 6.73112 6.76181 7.27231 7.33127 7.55645 7.68517 7.97781 8.10438 8.30709 9.08544 9.73161 10.19193 11.15388 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.002267 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.315486 B =12348.755833 C =12899.292792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.268 4.268 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.066 3.934 15 H 0.053 0.947 16 C 0.131 3.869 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.528 6.528 20 C 0.085 3.915 21 H 0.115 0.885 22 C -0.116 4.116 23 C -0.600 4.600 24 S 2.579 3.421 25 O -0.951 6.951 26 O -0.958 6.958 27 N -1.081 6.081 28 C 0.128 3.872 29 H 0.255 0.745 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.405 0.595 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.442 0.558 44 H 0.044 0.956 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.697 -11.860 -7.114 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.316 6.316 14 C 0.004 3.996 15 H 0.071 0.929 16 C 0.008 3.992 17 N -0.364 5.364 18 C 0.303 3.697 19 O -0.403 6.403 20 C -0.028 4.028 21 H 0.132 0.868 22 C -0.156 4.156 23 C -0.731 4.731 24 S 2.672 3.328 25 O -0.940 6.940 26 O -0.947 6.947 27 N -0.849 5.849 28 C -0.002 4.002 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.240 0.760 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.284 0.716 44 H 0.062 0.938 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.802 -13.147 -6.665 20.193 hybrid contribution 0.009 2.019 -0.007 2.019 sum 13.812 -11.129 -6.671 18.950 Atomic orbital electron populations 1.70068 1.05276 1.25638 1.53505 1.25061 0.95299 0.98480 1.00347 0.86270 0.79178 0.83670 0.77613 1.21418 1.21672 1.20344 1.19222 0.92385 0.84837 1.43258 0.91539 1.43839 1.31482 1.01537 1.54385 1.21004 0.88452 0.95474 0.89923 1.22768 0.97078 1.01325 1.00427 1.22019 0.92803 0.92152 0.91785 1.86070 1.70712 1.38044 1.36735 1.22638 0.94972 0.93720 0.88278 0.92947 1.21509 0.88790 0.96287 0.92658 1.45983 1.35894 1.31361 1.23160 1.19919 0.82152 0.80671 0.86983 1.90740 1.68804 1.57652 1.23142 1.22028 0.96476 0.83848 1.00421 0.86769 1.22426 0.89460 0.99545 1.04150 1.30758 1.08438 1.23067 1.10804 1.06156 0.74566 0.77186 0.74844 1.93667 1.82125 1.75633 1.42606 1.93622 1.69614 1.69452 1.62012 1.55346 1.41444 1.19811 1.68287 1.21403 0.95130 0.89035 0.94598 0.93499 0.90615 0.95435 0.92063 0.92367 0.92017 0.91170 0.90682 0.89927 0.76042 0.86710 0.88082 0.83744 0.83627 0.71552 0.93785 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 10.99 55.49 0.61 -24.22 16 2 C 0.01 0.19 4.89 -17.43 -0.09 0.11 16 3 Si 0.90 20.49 29.58 -169.99 -5.03 15.46 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.27 -6.76 9.46 -15.06 -0.14 -6.90 16 8 H 0.07 1.65 7.88 -52.49 -0.41 1.23 16 9 N -0.59 -13.54 2.23 -172.02 -0.38 -13.92 16 10 C 0.18 3.94 4.70 -3.19 -0.02 3.92 16 11 C -0.18 -3.11 5.78 -27.18 -0.16 -3.27 16 12 C 0.09 1.42 6.37 36.41 0.23 1.66 16 13 O -0.40 -6.28 9.38 -26.54 -0.25 -6.52 16 14 C 0.07 1.02 2.68 -25.78 -0.07 0.95 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.13 1.72 5.34 -4.05 -0.02 1.70 16 17 N -0.71 -7.47 5.49 -60.29 -0.33 -7.80 16 18 C 0.52 5.64 7.09 -10.99 -0.08 5.56 16 19 O -0.53 -7.73 16.28 5.55 0.09 -7.64 16 20 C 0.08 0.62 3.29 -67.68 -0.22 0.40 16 21 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 22 C -0.12 -0.56 6.12 -25.14 -0.15 -0.71 16 23 C -0.60 -2.30 7.49 38.17 0.29 -2.01 16 24 S 2.58 20.35 6.40 -107.50 -0.69 19.66 16 25 O -0.95 -10.52 18.14 -57.42 -1.04 -11.56 16 26 O -0.96 -11.15 18.14 -57.42 -1.04 -12.19 16 27 N -1.08 -9.16 6.62 -4.53 -0.03 -9.19 16 28 C 0.13 2.44 5.12 -3.83 -0.02 2.42 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.08 1.88 6.37 -51.93 -0.33 1.55 16 31 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 34 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 3.37 8.46 -40.82 -0.35 3.03 16 39 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.15 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.44 3.94 8.53 -40.75 -0.35 3.59 16 44 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 45 H 0.06 1.07 7.98 -51.93 -0.41 0.65 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -35.62 373.39 -9.76 -45.38 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.85 Total: 3.09 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.45 Total: 3.82 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.13 Total: -55.13 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -2.24 Total: -37.91 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: 20.35 SS G_CDS: -0.69 Total: 19.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.62 -9.76 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073893030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.641 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds