Wall clock time and date at job start Wed Apr 1 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00449 * 2 1 4 4 H 1.48500 * 109.47208 * 274.96998 * 3 2 1 5 5 H 1.48498 * 109.46677 * 34.96529 * 3 2 1 6 6 H 1.48492 * 109.47428 * 154.96545 * 3 2 1 7 7 C 1.38822 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99509 * 195.46739 * 7 2 1 9 9 N 1.36926 * 120.00044 * 15.46504 * 7 2 1 10 10 C 1.47510 * 118.76043 * 26.09994 * 9 7 2 11 11 C 1.53570 * 111.02701 * 138.37200 * 10 9 7 12 12 C 1.51532 * 109.58139 * 320.02049 * 11 10 9 13 13 O 1.42148 * 108.76462 * 91.40450 * 12 11 10 14 14 C 1.38017 * 119.43571 * 272.77607 * 13 12 11 15 15 H 1.08995 * 109.46886 * 303.42383 * 14 13 12 16 16 C 1.52996 * 109.47053 * 183.42880 * 14 13 12 17 17 N 1.46494 * 109.47461 * 65.00006 * 16 14 13 18 18 C 1.34775 * 120.00313 * 179.72524 * 17 16 14 19 19 O 1.21288 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00451 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.75803 * 319.27659 * 20 18 17 22 22 C 1.54116 * 109.76258 * 79.99624 * 20 18 17 23 23 C 1.54917 * 105.89374 * 165.31465 * 22 20 18 24 24 S 1.83173 * 102.71536 * 334.83714 * 23 22 20 25 25 O 1.42099 * 111.27638 * 111.02680 * 24 23 22 26 26 O 1.42105 * 111.27707 * 250.22221 * 24 23 22 27 27 N 1.47985 * 109.76710 * 198.54292 * 20 18 17 28 28 C 1.45127 * 118.75721 * 206.09629 * 9 7 2 29 29 H 0.96998 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.16585 * 17.97197 * 10 9 7 31 31 H 1.09004 * 109.16638 * 258.76722 * 10 9 7 32 32 H 1.08999 * 109.45091 * 199.98573 * 11 10 9 33 33 H 1.09000 * 109.43463 * 80.04454 * 11 10 9 34 34 H 1.08997 * 109.59250 * 331.61682 * 12 11 10 35 35 H 1.09007 * 109.58557 * 211.18634 * 12 11 10 36 36 H 1.09011 * 109.47326 * 304.99883 * 16 14 13 37 37 H 1.09004 * 109.47142 * 185.00278 * 16 14 13 38 38 H 0.97000 * 119.99667 * 359.97438 * 17 16 14 39 39 H 1.08996 * 110.16577 * 284.42482 * 22 20 18 40 40 H 1.08998 * 110.16281 * 46.21231 * 22 20 18 41 41 H 1.08999 * 110.76093 * 93.14537 * 23 22 20 42 42 H 1.08995 * 110.76208 * 216.52880 * 23 22 20 43 43 H 0.97002 * 127.76804 * 16.17808 * 27 20 18 44 44 H 1.08998 * 109.46031 * 149.27126 * 28 9 7 45 45 H 1.09001 * 109.45703 * 29.30756 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3928 2.1070 -1.3948 5 1 1.5041 2.6200 0.8024 6 1 3.5963 1.4120 0.5924 7 6 2.0102 -1.2023 -0.0005 8 1 3.0609 -1.2193 0.2489 9 7 1.3626 -2.3664 -0.3173 10 6 0.1709 -2.3025 -1.1843 11 6 0.1766 -3.4422 -2.2135 12 6 1.5840 -3.6478 -2.7360 13 8 2.2335 -4.6215 -1.9293 14 6 2.8924 -4.2232 -0.7838 15 1 3.6425 -3.4743 -1.0380 16 6 3.5760 -5.4322 -0.1422 17 7 4.6223 -5.9335 -1.0367 18 6 5.3656 -6.9977 -0.6745 19 8 5.1686 -7.5403 0.3922 20 6 6.4416 -7.5138 -1.5949 21 1 6.0862 -7.4933 -2.6252 22 6 7.7043 -6.6402 -1.4618 23 6 8.8481 -7.4432 -2.1302 24 16 8.2659 -9.1736 -1.9820 25 8 7.9261 -9.7139 -3.2517 26 8 9.0475 -9.9023 -1.0452 27 7 6.8018 -8.8984 -1.2170 28 6 1.8747 -3.6167 0.2127 29 1 -0.4850 0.8400 0.0004 30 1 0.1606 -1.3469 -1.7084 31 1 -0.7247 -2.3813 -0.5679 32 1 -0.4844 -3.1866 -3.0417 33 1 -0.1727 -4.3599 -1.7404 34 1 2.1331 -2.7074 -2.6870 35 1 1.5435 -3.9963 -3.7680 36 1 2.8392 -6.2168 0.0308 37 1 4.0212 -5.1362 0.8078 38 1 4.7825 -5.4971 -1.8880 39 1 7.5604 -5.6908 -1.9775 40 1 7.9319 -6.4666 -0.4101 41 1 8.9578 -7.1607 -3.1772 42 1 9.7848 -7.3032 -1.5909 43 1 6.3025 -9.5092 -0.6525 44 1 1.0499 -4.3141 0.3589 45 1 2.3674 -3.4317 1.1673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073893030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:38 Heat of formation + Delta-G solvation = -144.553504 kcal Electronic energy + Delta-G solvation = -29220.700644 eV Core-core repulsion = 24979.363316 eV Total energy + Delta-G solvation = -4241.337328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19609 -40.31508 -38.17848 -37.51599 -36.98638 -36.90865 -35.95206 -33.65488 -33.40116 -32.59281 -30.40490 -28.30801 -27.15264 -26.63608 -24.45114 -23.46834 -22.28503 -21.59707 -21.25097 -20.55558 -19.17607 -18.84091 -18.15363 -17.64543 -17.53344 -17.20940 -16.88004 -16.63646 -16.45863 -16.08715 -15.96233 -15.63729 -15.48585 -14.88604 -14.72773 -14.51537 -14.24856 -14.22238 -13.83053 -13.68367 -13.34202 -13.25062 -13.11056 -13.09719 -12.97993 -12.94041 -12.77892 -12.47905 -12.38520 -12.30906 -12.04229 -11.75225 -11.55479 -11.46590 -11.28627 -11.07916 -10.58359 -10.52322 -10.25538 -10.11347 -8.71835 -7.88208 -5.35753 -0.73458 1.39468 1.47357 1.49105 1.57642 1.61602 2.10135 2.50677 2.68715 2.78806 3.01785 3.27454 3.38166 3.45801 3.58312 3.77760 3.91567 4.07463 4.16273 4.19989 4.24845 4.31158 4.38584 4.55838 4.61379 4.69435 4.74587 4.77305 4.85133 4.89064 4.93060 4.94030 5.16808 5.21250 5.26959 5.38305 5.48360 5.62830 5.76632 6.06835 6.36531 6.52856 6.77552 7.15081 7.16869 7.87544 8.29015 9.17631 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.002267 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.315486 B =12348.755833 C =12899.292792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.093 3.907 13 O -0.391 6.391 14 C 0.086 3.914 15 H 0.053 0.947 16 C 0.142 3.858 17 N -0.703 5.703 18 C 0.521 3.479 19 O -0.571 6.571 20 C 0.083 3.917 21 H 0.144 0.856 22 C -0.118 4.118 23 C -0.560 4.560 24 S 2.574 3.426 25 O -0.990 6.990 26 O -1.005 7.005 27 N -1.092 6.092 28 C 0.121 3.879 29 H 0.249 0.751 30 H 0.046 0.954 31 H -0.010 1.010 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.150 0.850 40 H 0.096 0.904 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.436 0.564 44 H 0.039 0.961 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.011 -11.390 -9.024 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.396 4.396 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.204 4.204 12 C 0.017 3.983 13 O -0.310 6.310 14 C 0.025 3.975 15 H 0.071 0.929 16 C 0.017 3.983 17 N -0.355 5.355 18 C 0.306 3.694 19 O -0.449 6.449 20 C -0.029 4.029 21 H 0.161 0.839 22 C -0.158 4.158 23 C -0.695 4.695 24 S 2.673 3.327 25 O -0.979 6.979 26 O -0.995 6.995 27 N -0.858 5.858 28 C -0.007 4.007 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.008 0.992 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.256 0.744 39 H 0.168 0.832 40 H 0.115 0.885 41 H 0.197 0.803 42 H 0.187 0.813 43 H 0.277 0.723 44 H 0.057 0.943 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.141 -12.742 -8.605 22.293 hybrid contribution -0.748 1.881 0.641 2.124 sum 15.393 -10.861 -7.964 20.454 Atomic orbital electron populations 1.70238 1.06727 1.25747 1.55567 1.25794 0.95967 1.01511 1.01063 0.85284 0.78288 0.79705 0.77373 1.21108 1.22783 1.19013 1.19550 0.92690 0.85734 1.41651 0.91017 1.44048 1.31500 1.02225 1.55031 1.20768 0.86979 0.96112 0.90156 1.22629 0.99106 0.99072 0.99618 1.22062 0.91083 0.91705 0.93476 1.86105 1.70559 1.37909 1.36455 1.22292 0.93699 0.94500 0.87050 0.92906 1.21204 0.89259 0.94910 0.92940 1.45798 1.35026 1.31396 1.23293 1.20472 0.82290 0.79885 0.86774 1.90730 1.70108 1.58868 1.25236 1.22327 0.96587 0.83361 1.00650 0.83913 1.22600 0.88108 1.00367 1.04712 1.30572 1.08734 1.16758 1.13421 1.06098 0.73927 0.79222 0.73417 1.93614 1.82611 1.78127 1.43579 1.93560 1.70385 1.72443 1.63069 1.55388 1.41767 1.20450 1.68189 1.21592 0.95836 0.87681 0.95575 0.94214 0.93550 0.99198 0.89892 0.92292 0.93876 0.87307 0.91738 0.89931 0.74368 0.83228 0.88526 0.80291 0.81348 0.72264 0.94261 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.26 10.99 21.65 0.24 -53.03 16 2 C -0.05 -2.52 4.89 84.86 0.41 -2.11 16 3 Si 0.96 42.31 29.58 68.60 2.03 44.34 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.27 -13.46 9.46 84.04 0.80 -12.66 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 9 N -0.61 -27.95 2.23 -698.14 -1.55 -29.50 16 10 C 0.18 8.44 4.70 86.38 0.41 8.84 16 11 C -0.17 -5.61 5.78 30.30 0.18 -5.43 16 12 C 0.09 2.73 6.37 71.50 0.46 3.18 16 13 O -0.39 -11.32 9.38 -117.89 -1.11 -12.42 16 14 C 0.09 2.52 2.68 31.21 0.08 2.60 16 15 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 16 C 0.14 3.47 5.34 86.38 0.46 3.93 16 17 N -0.70 -12.75 5.49 -463.05 -2.54 -15.29 16 18 C 0.52 10.18 7.09 87.66 0.62 10.80 16 19 O -0.57 -16.32 16.28 -3.05 -0.05 -16.37 16 20 C 0.08 0.97 3.29 44.34 0.15 1.11 16 21 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 22 C -0.12 -0.61 6.12 31.63 0.19 -0.41 16 23 C -0.56 -1.73 7.49 72.64 0.54 -1.19 16 24 S 2.57 37.44 6.40 -56.49 -0.36 37.08 16 25 O -0.99 -21.08 18.14 -127.76 -2.32 -23.40 16 26 O -1.00 -23.54 18.14 -127.76 -2.32 -25.86 16 27 N -1.09 -17.41 6.62 -168.24 -1.11 -18.53 16 28 C 0.12 4.58 5.12 87.25 0.45 5.03 16 29 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.05 2.37 6.37 -2.39 -0.02 2.35 16 31 H -0.01 -0.53 8.04 -2.38 -0.02 -0.55 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 2.00 8.01 -2.39 -0.02 1.98 16 34 H 0.04 1.46 7.40 -2.39 -0.02 1.44 16 35 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.42 5.29 8.46 -92.71 -0.78 4.50 16 39 H 0.15 -0.15 8.14 -2.39 -0.02 -0.16 16 40 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.18 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.17 -0.03 8.14 -2.39 -0.02 -0.04 16 43 H 0.44 7.94 8.53 -92.75 -0.79 7.15 16 44 H 0.04 1.51 8.11 -2.39 -0.02 1.49 16 45 H 0.05 1.97 7.98 -2.39 -0.02 1.95 16 Total: -1.00 -81.23 373.39 -4.90 -86.14 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.55 Total: 13.14 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 4.74 Total: 13.69 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.97 Total: -116.35 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -5.79 Total: -78.04 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -0.36 Total: 37.08 kcal Total: -81.23 -4.90 -86.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073893030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.415 kcal (2) G-P(sol) polarization free energy of solvation -81.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds