Wall clock time and date at job start Wed Apr 1 2020 04:21:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86795 * 119.99910 * 2 1
4 4 H 1.48501 * 109.47057 * 270.00009 * 3 2 1
5 5 H 1.48503 * 109.47271 * 29.99705 * 3 2 1
6 6 H 1.48503 * 109.47110 * 150.00216 * 3 2 1
7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99911 * 180.02562 * 7 2 1
9 9 N 1.36938 * 120.00139 * 359.97438 * 7 2 1
10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2
11 11 H 1.08999 * 109.46595 * 35.01028 * 10 9 7
12 12 C 1.52992 * 109.47408 * 275.00713 * 10 9 7
13 13 C 1.52999 * 109.46921 * 179.97438 * 12 10 9
14 14 C 1.53002 * 109.47179 * 60.00100 * 13 12 10
15 15 C 1.53005 * 109.46840 * 300.00084 * 14 13 12
16 16 C 1.52999 * 109.47303 * 59.99992 * 15 14 13
17 17 H 1.08999 * 109.46965 * 59.99658 * 16 15 14
18 18 N 1.46499 * 109.47136 * 180.02562 * 16 15 14
19 19 C 1.34777 * 119.99665 * 275.27771 * 18 16 15
20 20 O 1.21613 * 120.00251 * 359.72091 * 19 18 16
21 21 C 1.47425 * 119.99743 * 179.72398 * 19 18 16
22 22 N 1.36067 * 126.44626 * 0.02562 * 21 19 18
23 23 C 1.29933 * 108.47372 * 180.02562 * 22 21 19
24 24 O 1.34057 * 109.24614 * 359.97438 * 23 22 21
25 25 C 1.34255 * 108.22029 * 359.73676 * 24 23 22
26 26 C 1.50708 * 126.52106 * 180.26165 * 25 24 23
27 27 F 1.39900 * 109.47067 * 270.19066 * 26 25 24
28 28 F 1.39900 * 109.46740 * 30.19264 * 26 25 24
29 29 F 1.39896 * 109.46683 * 150.18763 * 26 25 24
30 30 H 0.97000 * 120.00145 * 0.02562 * 1 2 3
31 31 H 0.97004 * 119.99829 * 0.02562 * 9 7 2
32 32 H 1.09006 * 109.47246 * 59.99770 * 12 10 9
33 33 H 1.08999 * 109.47499 * 299.99761 * 12 10 9
34 34 H 1.09000 * 109.47077 * 299.99701 * 13 12 10
35 35 H 1.09005 * 109.47368 * 180.02562 * 13 12 10
36 36 H 1.09000 * 109.46999 * 179.97438 * 14 13 12
37 37 H 1.08999 * 109.47056 * 60.00198 * 14 13 12
38 38 H 1.09006 * 109.46786 * 299.99624 * 15 14 13
39 39 H 1.08999 * 109.46630 * 180.02562 * 15 14 13
40 40 H 0.97001 * 119.99790 * 94.99484 * 18 16 15
41 41 H 1.08005 * 125.37874 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4475 2.6527 0.7000
6 1 3.5477 1.4401 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6569 -0.0017
11 1 2.9691 -3.5508 0.5873
12 6 2.4210 -4.0350 -1.4390
13 6 3.1865 -5.3597 -1.4400
14 6 2.3102 -6.4556 -0.8301
15 6 1.9472 -6.0773 0.6073
16 6 1.1817 -4.7526 0.6083
17 1 0.2706 -4.8591 0.0195
18 7 0.8347 -4.3902 1.9847
19 6 -0.2796 -4.8920 2.5531
20 8 -0.9996 -5.6417 1.9218
21 6 -0.6256 -4.5321 3.9403
22 7 0.0810 -3.7096 4.7622
23 6 -0.5370 -3.6373 5.9028
24 8 -1.6416 -4.3954 5.8557
25 6 -1.7149 -4.9552 4.6376
26 6 -2.7957 -5.8796 4.1389
27 9 -2.4451 -7.2036 4.4242
28 9 -4.0035 -5.5699 4.7732
29 9 -2.9416 -5.7233 2.7564
30 1 -0.4850 0.8400 -0.0004
31 1 0.3555 -2.3881 -0.0005
32 1 3.0456 -3.2544 -1.8734
33 1 1.5099 -4.1410 -2.0280
34 1 4.0976 -5.2532 -0.8512
35 1 3.4455 -5.6289 -2.4640
36 1 2.8554 -7.3994 -0.8313
37 1 1.3991 -6.5620 -1.4190
38 1 2.8584 -5.9710 1.1961
39 1 1.3233 -6.8583 1.0419
40 1 1.4090 -3.7923 2.4882
41 1 -0.2122 -3.0579 6.7544
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001085250766.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:21:37
Heat of formation + Delta-G solvation = -150.429811 kcal
Electronic energy + Delta-G solvation = -31884.293727 eV
Core-core repulsion = 26965.400891 eV
Total energy + Delta-G solvation = -4918.892835 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-50.28296 -47.86839 -47.67364 -43.88980 -39.77150 -37.88552 -35.29548 -34.05441
-33.81020 -31.79577 -31.15560 -29.46800 -27.85276 -26.51964 -24.35988 -23.71886
-22.84015 -21.83933 -21.09070 -20.42993 -19.80044 -19.02490 -18.77893 -18.39817
-17.78711 -17.10759 -17.04895 -16.18303 -16.01903 -15.03114 -14.85853 -14.69896
-14.59706 -14.30436 -14.27177 -14.15421 -13.94813 -13.86722 -13.78613 -13.62350
-13.44027 -12.98548 -12.87622 -12.62295 -12.23915 -12.10876 -11.71667 -11.21505
-11.09666 -10.92649 -10.87109 -10.76863 -10.60762 -10.35000 -10.17783 -9.98646
-9.77002 -9.71107 -9.65259 -8.93393 -8.68313 -6.99763 -5.78372 -3.08248
0.40185 1.47359 1.76236 2.73350 3.07354 3.26114 3.41086 3.46327
3.46847 3.48045 3.71022 4.06877 4.13547 4.50126 4.54988 4.86771
5.04227 5.06633 5.12250 5.27051 5.49220 5.51579 5.62760 5.69565
5.78774 5.87626 5.93291 5.96033 6.10660 6.29336 6.42443 6.45102
6.47082 6.56358 6.76175 6.85797 6.93412 7.05997 7.67076 7.74683
8.31244 8.38538 9.50346 10.06063 10.41157 11.43616
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.009952 B = 0.004018 C = 0.003197
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2812.903814 B = 6967.236584 C = 8755.508727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.010 4.010
3 Si 0.905 3.095
4 H -0.290 1.290
5 H -0.293 1.293
6 H -0.282 1.282
7 C -0.240 4.240
8 H 0.070 0.930
9 N -0.721 5.721
10 C 0.173 3.827
11 H 0.052 0.948
12 C -0.132 4.132
13 C -0.120 4.120
14 C -0.113 4.113
15 C -0.124 4.124
16 C 0.139 3.861
17 H 0.089 0.911
18 N -0.678 5.678
19 C 0.585 3.415
20 O -0.521 6.521
21 C 0.031 3.969
22 N -0.456 5.456
23 C 0.218 3.782
24 O -0.174 6.174
25 C -0.095 4.095
26 C 0.565 3.435
27 F -0.163 7.163
28 F -0.170 7.170
29 F -0.121 7.121
30 H 0.255 0.745
31 H 0.385 0.615
32 H 0.066 0.934
33 H 0.058 0.942
34 H 0.058 0.942
35 H 0.055 0.945
36 H 0.058 0.942
37 H 0.063 0.937
38 H 0.062 0.938
39 H 0.063 0.937
40 H 0.413 0.587
41 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.303 -13.268 10.876 17.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.206 4.206
3 Si 0.736 3.264
4 H -0.218 1.218
5 H -0.219 1.219
6 H -0.208 1.208
7 C -0.371 4.371
8 H 0.088 0.912
9 N -0.362 5.362
10 C 0.063 3.937
11 H 0.070 0.930
12 C -0.173 4.173
13 C -0.158 4.158
14 C -0.151 4.151
15 C -0.164 4.164
16 C 0.034 3.966
17 H 0.107 0.893
18 N -0.327 5.327
19 C 0.368 3.632
20 O -0.397 6.397
21 C -0.092 4.092
22 N -0.184 5.184
23 C -0.009 4.009
24 O -0.060 6.060
25 C -0.152 4.152
26 C 0.510 3.490
27 F -0.144 7.144
28 F -0.151 7.151
29 F -0.102 7.102
30 H 0.065 0.935
31 H 0.219 0.781
32 H 0.085 0.915
33 H 0.076 0.924
34 H 0.076 0.924
35 H 0.074 0.926
36 H 0.077 0.923
37 H 0.081 0.919
38 H 0.081 0.919
39 H 0.082 0.918
40 H 0.249 0.751
41 H 0.284 0.716
Dipole moment (debyes) X Y Z Total
from point charges -0.172 -13.334 10.284 16.840
hybrid contribution -0.263 1.127 0.555 1.283
sum -0.435 -12.207 10.839 16.330
Atomic orbital electron populations
1.69672 1.05103 1.25614 1.57339 1.24728 0.95425 0.97613 1.02872
0.86231 0.78637 0.84028 0.77496 1.21775 1.21897 1.20776 1.19189
0.90900 0.83959 1.43048 0.91172 1.42413 1.05797 0.99468 1.88527
1.20463 0.93916 0.85666 0.93687 0.93017 1.22217 1.00019 0.95576
0.99530 1.21589 0.98541 0.95652 1.00024 1.21467 0.99999 0.98068
0.95580 1.21882 1.00083 0.96973 0.97418 1.21458 0.99468 0.94423
0.81221 0.89303 1.45711 1.24092 1.47535 1.15338 1.16697 0.82192
0.81425 0.82907 1.90912 1.50142 1.36438 1.62255 1.21982 0.92383
0.97464 0.97333 1.71018 1.29418 1.16364 1.01621 1.28527 0.80824
0.92852 0.98727 1.84361 1.42393 1.48811 1.30461 1.23119 1.00789
1.04890 0.86415 1.16464 0.78021 0.77421 0.77101 1.93265 1.91804
1.35865 1.93441 1.93249 1.46943 1.92746 1.82203 1.93475 1.95066
1.95102 1.26544 0.93543 0.78147 0.91502 0.92364 0.92357 0.92622
0.92292 0.91854 0.91882 0.91790 0.75053 0.71566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16
2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
3 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16
4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
7 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16
8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16
9 N -0.72 -17.18 4.95 -53.43 -0.26 -17.44 16
10 C 0.17 3.23 2.29 -67.93 -0.16 3.07 16
11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16
12 C -0.13 -2.25 5.50 -26.74 -0.15 -2.39 16
13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16
14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16
15 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16
16 C 0.14 2.34 1.98 -67.93 -0.13 2.20 16
17 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16
18 N -0.68 -11.51 4.91 -54.88 -0.27 -11.78 16
19 C 0.59 10.20 7.72 -12.52 -0.10 10.10 16
20 O -0.52 -9.89 12.82 5.27 0.07 -9.82 16
21 C 0.03 0.48 6.96 -83.02 -0.58 -0.10 16
22 N -0.46 -6.20 11.06 -11.48 -0.13 -6.33 16
23 C 0.22 2.04 13.19 51.96 0.69 2.72 16
24 O -0.17 -1.96 10.72 6.50 0.07 -1.89 16
25 C -0.09 -1.32 6.75 -35.08 -0.24 -1.56 16
26 C 0.57 7.88 3.34 36.01 0.12 8.00 16
27 F -0.16 -2.17 17.30 2.25 0.04 -2.14 16
28 F -0.17 -2.20 17.30 2.25 0.04 -2.16 16
29 F -0.12 -1.98 13.49 2.25 0.03 -1.95 16
30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
31 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16
32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16
33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
40 H 0.41 7.04 8.33 -40.82 -0.34 6.70 16
41 H 0.27 0.84 8.06 -52.48 -0.42 0.42 16
LS Contribution 358.10 15.07 5.40 5.40
Total: -1.00 -31.75 358.10 -5.39 -37.14
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: -4.82 Total: 11.05 kcal
Atomic # 6 Polarization: 11.21 SS G_CDS: -1.25 Total: 9.96 kcal
Atomic # 7 Polarization: -62.57 SS G_CDS: 0.06 Total: -62.51 kcal
Atomic # 8 Polarization: -11.84 SS G_CDS: 0.14 Total: -11.71 kcal
Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -31.75 -5.39 -37.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085250766.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -113.290 kcal
(2) G-P(sol) polarization free energy of solvation -31.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.038 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds