Wall clock time and date at job start Wed Apr 1 2020 04:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47057 * 270.00009 * 3 2 1 5 5 H 1.48503 * 109.47271 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47110 * 150.00216 * 3 2 1 7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46595 * 35.01028 * 10 9 7 12 12 C 1.52992 * 109.47408 * 275.00713 * 10 9 7 13 13 C 1.52999 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47179 * 60.00100 * 13 12 10 15 15 C 1.53005 * 109.46840 * 300.00084 * 14 13 12 16 16 C 1.52999 * 109.47303 * 59.99992 * 15 14 13 17 17 H 1.08999 * 109.46965 * 59.99658 * 16 15 14 18 18 N 1.46499 * 109.47136 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99665 * 275.27771 * 18 16 15 20 20 O 1.21613 * 120.00251 * 359.72091 * 19 18 16 21 21 C 1.47425 * 119.99743 * 179.72398 * 19 18 16 22 22 N 1.36067 * 126.44626 * 0.02562 * 21 19 18 23 23 C 1.29933 * 108.47372 * 180.02562 * 22 21 19 24 24 O 1.34057 * 109.24614 * 359.97438 * 23 22 21 25 25 C 1.34255 * 108.22029 * 359.73676 * 24 23 22 26 26 C 1.50708 * 126.52106 * 180.26165 * 25 24 23 27 27 F 1.39900 * 109.47067 * 270.19066 * 26 25 24 28 28 F 1.39900 * 109.46740 * 30.19264 * 26 25 24 29 29 F 1.39896 * 109.46683 * 150.18763 * 26 25 24 30 30 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99829 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47246 * 59.99770 * 12 10 9 33 33 H 1.08999 * 109.47499 * 299.99761 * 12 10 9 34 34 H 1.09000 * 109.47077 * 299.99701 * 13 12 10 35 35 H 1.09005 * 109.47368 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46999 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47056 * 60.00198 * 14 13 12 38 38 H 1.09006 * 109.46786 * 299.99624 * 15 14 13 39 39 H 1.08999 * 109.46630 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99790 * 94.99484 * 18 16 15 41 41 H 1.08005 * 125.37874 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9691 -3.5508 0.5873 12 6 2.4210 -4.0350 -1.4390 13 6 3.1865 -5.3597 -1.4400 14 6 2.3102 -6.4556 -0.8301 15 6 1.9472 -6.0773 0.6073 16 6 1.1817 -4.7526 0.6083 17 1 0.2706 -4.8591 0.0195 18 7 0.8347 -4.3902 1.9847 19 6 -0.2796 -4.8920 2.5531 20 8 -0.9996 -5.6417 1.9218 21 6 -0.6256 -4.5321 3.9403 22 7 0.0810 -3.7096 4.7622 23 6 -0.5370 -3.6373 5.9028 24 8 -1.6416 -4.3954 5.8557 25 6 -1.7149 -4.9552 4.6376 26 6 -2.7957 -5.8796 4.1389 27 9 -2.4451 -7.2036 4.4242 28 9 -4.0035 -5.5699 4.7732 29 9 -2.9416 -5.7233 2.7564 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0456 -3.2544 -1.8734 33 1 1.5099 -4.1410 -2.0280 34 1 4.0976 -5.2532 -0.8512 35 1 3.4455 -5.6289 -2.4640 36 1 2.8554 -7.3994 -0.8313 37 1 1.3991 -6.5620 -1.4190 38 1 2.8584 -5.9710 1.1961 39 1 1.3233 -6.8583 1.0419 40 1 1.4090 -3.7923 2.4882 41 1 -0.2122 -3.0579 6.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085250766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:37 Heat of formation + Delta-G solvation = -150.429811 kcal Electronic energy + Delta-G solvation = -31884.293727 eV Core-core repulsion = 26965.400891 eV Total energy + Delta-G solvation = -4918.892835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.28296 -47.86839 -47.67364 -43.88980 -39.77150 -37.88552 -35.29548 -34.05441 -33.81020 -31.79577 -31.15560 -29.46800 -27.85276 -26.51964 -24.35988 -23.71886 -22.84015 -21.83933 -21.09070 -20.42993 -19.80044 -19.02490 -18.77893 -18.39817 -17.78711 -17.10759 -17.04895 -16.18303 -16.01903 -15.03114 -14.85853 -14.69896 -14.59706 -14.30436 -14.27177 -14.15421 -13.94813 -13.86722 -13.78613 -13.62350 -13.44027 -12.98548 -12.87622 -12.62295 -12.23915 -12.10876 -11.71667 -11.21505 -11.09666 -10.92649 -10.87109 -10.76863 -10.60762 -10.35000 -10.17783 -9.98646 -9.77002 -9.71107 -9.65259 -8.93393 -8.68313 -6.99763 -5.78372 -3.08248 0.40185 1.47359 1.76236 2.73350 3.07354 3.26114 3.41086 3.46327 3.46847 3.48045 3.71022 4.06877 4.13547 4.50126 4.54988 4.86771 5.04227 5.06633 5.12250 5.27051 5.49220 5.51579 5.62760 5.69565 5.78774 5.87626 5.93291 5.96033 6.10660 6.29336 6.42443 6.45102 6.47082 6.56358 6.76175 6.85797 6.93412 7.05997 7.67076 7.74683 8.31244 8.38538 9.50346 10.06063 10.41157 11.43616 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.004018 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.903814 B = 6967.236584 C = 8755.508727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.052 0.948 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.139 3.861 17 H 0.089 0.911 18 N -0.678 5.678 19 C 0.585 3.415 20 O -0.521 6.521 21 C 0.031 3.969 22 N -0.456 5.456 23 C 0.218 3.782 24 O -0.174 6.174 25 C -0.095 4.095 26 C 0.565 3.435 27 F -0.163 7.163 28 F -0.170 7.170 29 F -0.121 7.121 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.413 0.587 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 -13.268 10.876 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.063 3.937 11 H 0.070 0.930 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.034 3.966 17 H 0.107 0.893 18 N -0.327 5.327 19 C 0.368 3.632 20 O -0.397 6.397 21 C -0.092 4.092 22 N -0.184 5.184 23 C -0.009 4.009 24 O -0.060 6.060 25 C -0.152 4.152 26 C 0.510 3.490 27 F -0.144 7.144 28 F -0.151 7.151 29 F -0.102 7.102 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.249 0.751 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -0.172 -13.334 10.284 16.840 hybrid contribution -0.263 1.127 0.555 1.283 sum -0.435 -12.207 10.839 16.330 Atomic orbital electron populations 1.69672 1.05103 1.25614 1.57339 1.24728 0.95425 0.97613 1.02872 0.86231 0.78637 0.84028 0.77496 1.21775 1.21897 1.20776 1.19189 0.90900 0.83959 1.43048 0.91172 1.42413 1.05797 0.99468 1.88527 1.20463 0.93916 0.85666 0.93687 0.93017 1.22217 1.00019 0.95576 0.99530 1.21589 0.98541 0.95652 1.00024 1.21467 0.99999 0.98068 0.95580 1.21882 1.00083 0.96973 0.97418 1.21458 0.99468 0.94423 0.81221 0.89303 1.45711 1.24092 1.47535 1.15338 1.16697 0.82192 0.81425 0.82907 1.90912 1.50142 1.36438 1.62255 1.21982 0.92383 0.97464 0.97333 1.71018 1.29418 1.16364 1.01621 1.28527 0.80824 0.92852 0.98727 1.84361 1.42393 1.48811 1.30461 1.23119 1.00789 1.04890 0.86415 1.16464 0.78021 0.77421 0.77101 1.93265 1.91804 1.35865 1.93441 1.93249 1.46943 1.92746 1.82203 1.93475 1.95066 1.95102 1.26544 0.93543 0.78147 0.91502 0.92364 0.92357 0.92622 0.92292 0.91854 0.91882 0.91790 0.75053 0.71566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.18 4.95 -53.43 -0.26 -17.44 16 10 C 0.17 3.23 2.29 -67.93 -0.16 3.07 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.13 -2.25 5.50 -26.74 -0.15 -2.39 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 14 C -0.11 -1.43 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.73 5.49 -26.73 -0.15 -1.88 16 16 C 0.14 2.34 1.98 -67.93 -0.13 2.20 16 17 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 18 N -0.68 -11.51 4.91 -54.88 -0.27 -11.78 16 19 C 0.59 10.20 7.72 -12.52 -0.10 10.10 16 20 O -0.52 -9.89 12.82 5.27 0.07 -9.82 16 21 C 0.03 0.48 6.96 -83.02 -0.58 -0.10 16 22 N -0.46 -6.20 11.06 -11.48 -0.13 -6.33 16 23 C 0.22 2.04 13.19 51.96 0.69 2.72 16 24 O -0.17 -1.96 10.72 6.50 0.07 -1.89 16 25 C -0.09 -1.32 6.75 -35.08 -0.24 -1.56 16 26 C 0.57 7.88 3.34 36.01 0.12 8.00 16 27 F -0.16 -2.17 17.30 2.25 0.04 -2.14 16 28 F -0.17 -2.20 17.30 2.25 0.04 -2.16 16 29 F -0.12 -1.98 13.49 2.25 0.03 -1.95 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.41 7.04 8.33 -40.82 -0.34 6.70 16 41 H 0.27 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -31.75 358.10 -5.39 -37.14 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.82 Total: 11.05 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.25 Total: 9.96 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.06 Total: -62.51 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.14 Total: -11.71 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.75 -5.39 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085250766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.290 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds