Wall clock time and date at job start Wed Apr 1 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99910 * 2 1 4 4 H 1.48501 * 109.47057 * 270.00009 * 3 2 1 5 5 H 1.48503 * 109.47271 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47110 * 150.00216 * 3 2 1 7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46595 * 35.01028 * 10 9 7 12 12 C 1.52992 * 109.47408 * 275.00713 * 10 9 7 13 13 C 1.52999 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47179 * 60.00100 * 13 12 10 15 15 C 1.53005 * 109.46840 * 300.00084 * 14 13 12 16 16 C 1.52999 * 109.47303 * 59.99992 * 15 14 13 17 17 H 1.08999 * 109.46965 * 59.99658 * 16 15 14 18 18 N 1.46499 * 109.47136 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99665 * 275.27771 * 18 16 15 20 20 O 1.21613 * 120.00251 * 359.72091 * 19 18 16 21 21 C 1.47425 * 119.99743 * 179.72398 * 19 18 16 22 22 N 1.36067 * 126.44626 * 0.02562 * 21 19 18 23 23 C 1.29933 * 108.47372 * 180.02562 * 22 21 19 24 24 O 1.34057 * 109.24614 * 359.97438 * 23 22 21 25 25 C 1.34255 * 108.22029 * 359.73676 * 24 23 22 26 26 C 1.50708 * 126.52106 * 180.26165 * 25 24 23 27 27 F 1.39900 * 109.47067 * 270.19066 * 26 25 24 28 28 F 1.39900 * 109.46740 * 30.19264 * 26 25 24 29 29 F 1.39896 * 109.46683 * 150.18763 * 26 25 24 30 30 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99829 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47246 * 59.99770 * 12 10 9 33 33 H 1.08999 * 109.47499 * 299.99761 * 12 10 9 34 34 H 1.09000 * 109.47077 * 299.99701 * 13 12 10 35 35 H 1.09005 * 109.47368 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46999 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47056 * 60.00198 * 14 13 12 38 38 H 1.09006 * 109.46786 * 299.99624 * 15 14 13 39 39 H 1.08999 * 109.46630 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99790 * 94.99484 * 18 16 15 41 41 H 1.08005 * 125.37874 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9691 -3.5508 0.5873 12 6 2.4210 -4.0350 -1.4390 13 6 3.1865 -5.3597 -1.4400 14 6 2.3102 -6.4556 -0.8301 15 6 1.9472 -6.0773 0.6073 16 6 1.1817 -4.7526 0.6083 17 1 0.2706 -4.8591 0.0195 18 7 0.8347 -4.3902 1.9847 19 6 -0.2796 -4.8920 2.5531 20 8 -0.9996 -5.6417 1.9218 21 6 -0.6256 -4.5321 3.9403 22 7 0.0810 -3.7096 4.7622 23 6 -0.5370 -3.6373 5.9028 24 8 -1.6416 -4.3954 5.8557 25 6 -1.7149 -4.9552 4.6376 26 6 -2.7957 -5.8796 4.1389 27 9 -2.4451 -7.2036 4.4242 28 9 -4.0035 -5.5699 4.7732 29 9 -2.9416 -5.7233 2.7564 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0456 -3.2544 -1.8734 33 1 1.5099 -4.1410 -2.0280 34 1 4.0976 -5.2532 -0.8512 35 1 3.4455 -5.6289 -2.4640 36 1 2.8554 -7.3994 -0.8313 37 1 1.3991 -6.5620 -1.4190 38 1 2.8584 -5.9710 1.1961 39 1 1.3233 -6.8583 1.0419 40 1 1.4090 -3.7923 2.4882 41 1 -0.2122 -3.0579 6.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085250766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:36 Heat of formation + Delta-G solvation = -174.293072 kcal Electronic energy + Delta-G solvation = -31885.328515 eV Core-core repulsion = 26965.400891 eV Total energy + Delta-G solvation = -4919.927624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.39486 -48.94220 -48.84282 -44.84693 -41.12449 -39.24937 -36.31369 -35.81499 -35.16363 -32.99622 -32.83692 -30.74628 -29.45323 -27.64215 -25.72270 -25.33191 -23.89197 -23.04207 -22.48324 -21.70165 -21.02814 -20.19622 -19.87149 -19.53012 -19.20382 -18.77106 -18.02866 -17.46751 -17.15878 -16.64412 -16.11752 -15.86406 -15.78274 -15.69628 -15.41230 -15.35005 -15.30025 -15.18668 -14.98063 -14.91393 -14.68908 -14.61254 -14.13123 -13.89045 -13.65488 -13.52384 -12.92435 -12.81800 -12.74871 -12.26719 -12.19897 -12.15830 -12.03276 -12.02076 -11.68047 -11.43139 -11.36111 -11.07683 -10.85875 -10.79202 -10.04525 -8.99280 -7.90571 -5.19530 -0.66405 0.46783 0.82435 1.48549 1.49701 1.57793 1.67997 1.85223 2.00564 2.44133 2.57573 2.80030 2.98708 3.02522 3.36666 3.44103 3.67325 3.78794 3.85311 4.11690 4.13959 4.26292 4.30876 4.43422 4.48124 4.59451 4.69699 4.83209 4.95993 5.00518 5.11962 5.25315 5.29832 5.31345 5.44061 5.51431 5.54946 5.65483 5.98806 6.28879 6.40783 6.96763 7.35764 8.09107 8.33214 9.32651 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.004018 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.903814 B = 6967.236584 C = 8755.508727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.172 3.828 11 H 0.058 0.942 12 C -0.127 4.127 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.115 4.115 16 C 0.146 3.854 17 H 0.062 0.938 18 N -0.678 5.678 19 C 0.578 3.422 20 O -0.544 6.544 21 C 0.011 3.989 22 N -0.493 5.493 23 C 0.252 3.748 24 O -0.167 6.167 25 C -0.099 4.099 26 C 0.567 3.433 27 F -0.160 7.160 28 F -0.164 7.164 29 F -0.140 7.140 30 H 0.247 0.753 31 H 0.368 0.632 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.412 0.588 41 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -13.888 12.325 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.371 5.371 10 C 0.064 3.936 11 H 0.076 0.924 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.154 4.154 16 C 0.041 3.959 17 H 0.080 0.920 18 N -0.327 5.327 19 C 0.362 3.638 20 O -0.423 6.423 21 C -0.111 4.111 22 N -0.221 5.221 23 C 0.026 3.974 24 O -0.053 6.053 25 C -0.157 4.157 26 C 0.512 3.488 27 F -0.141 7.141 28 F -0.145 7.145 29 F -0.120 7.120 30 H 0.056 0.944 31 H 0.199 0.801 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.249 0.751 41 H 0.343 0.657 Dipole moment (debyes) X Y Z Total from point charges 1.818 -13.993 11.727 18.348 hybrid contribution -0.846 1.285 0.177 1.549 sum 0.972 -12.708 11.904 17.440 Atomic orbital electron populations 1.69846 1.06733 1.25683 1.59933 1.25484 0.96128 1.00888 1.04118 0.85208 0.77852 0.79934 0.77170 1.21930 1.22795 1.19058 1.19577 0.91385 0.84853 1.40309 0.90256 1.42581 1.05126 1.00788 1.88575 1.20675 0.93773 0.84172 0.95015 0.92440 1.22078 0.99636 0.97546 0.97494 1.21524 0.98370 0.93282 1.01636 1.21474 0.99995 0.99085 0.94174 1.21824 1.00051 0.94720 0.98818 1.21354 0.98293 0.95393 0.80855 0.91979 1.45721 1.24170 1.47527 1.15234 1.17021 0.81808 0.81065 0.83880 1.90888 1.50652 1.37481 1.63236 1.21731 0.93593 0.98947 0.96834 1.70999 1.30649 1.17406 1.03025 1.29898 0.78615 0.90264 0.98626 1.84405 1.43086 1.48844 1.29007 1.22954 1.00321 1.05181 0.87258 1.16433 0.78384 0.77660 0.76347 1.93264 1.91812 1.35704 1.93316 1.93257 1.46593 1.92715 1.81913 1.93435 1.95214 1.95230 1.28167 0.94405 0.80099 0.93068 0.93864 0.91004 0.90733 0.89317 0.92545 0.90357 0.92097 0.75135 0.65742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.23 -12.21 9.93 84.03 0.83 -11.37 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -35.61 4.95 -322.95 -1.60 -37.21 16 10 C 0.17 6.42 2.29 44.99 0.10 6.53 16 11 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 12 C -0.13 -4.25 5.50 30.59 0.17 -4.08 16 13 C -0.11 -2.66 5.92 30.59 0.18 -2.47 16 14 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 15 C -0.12 -3.05 5.49 30.60 0.17 -2.88 16 16 C 0.15 4.96 1.98 44.99 0.09 5.05 16 17 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 18 N -0.68 -23.49 4.91 -445.80 -2.19 -25.68 16 19 C 0.58 20.73 7.72 86.66 0.67 21.40 16 20 O -0.54 -21.47 12.82 -4.07 -0.05 -21.52 16 21 C 0.01 0.34 6.96 40.41 0.28 0.62 16 22 N -0.49 -12.80 11.06 -305.14 -3.37 -16.17 16 23 C 0.25 3.96 13.19 130.52 1.72 5.68 16 24 O -0.17 -3.40 10.72 0.33 0.00 -3.40 16 25 C -0.10 -2.71 6.75 25.19 0.17 -2.54 16 26 C 0.57 15.87 3.34 71.24 0.24 16.11 16 27 F -0.16 -4.26 17.30 44.97 0.78 -3.48 16 28 F -0.16 -4.16 17.30 44.97 0.78 -3.38 16 29 F -0.14 -4.72 13.49 44.97 0.61 -4.12 16 30 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.37 20.24 7.80 -92.71 -0.72 19.52 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.41 14.24 8.33 -92.71 -0.77 13.47 16 41 H 0.33 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -71.55 358.10 2.15 -69.40 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.38 Total: 31.29 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 5.27 Total: 26.01 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -6.88 Total: -138.28 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 9 Polarization: -13.14 SS G_CDS: 2.16 Total: -10.97 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.55 2.15 -69.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085250766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.898 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds