Wall clock time and date at job start Wed Apr 1 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30014 * 127.33152 * 2 1 4 4 O 1.20663 * 112.29632 * 179.66557 * 3 2 1 5 5 C 1.33483 * 113.15706 * 0.50231 * 4 3 2 6 6 C 1.50703 * 126.82761 * 179.78025 * 5 4 3 7 7 F 1.39905 * 109.47157 * 269.68751 * 6 5 4 8 8 F 1.39900 * 109.47159 * 149.69052 * 6 5 4 9 9 F 1.39897 * 109.47274 * 29.68743 * 6 5 4 10 10 C 1.37359 * 106.34424 * 359.52160 * 5 4 3 11 11 C 1.47405 * 128.56523 * 180.28134 * 10 5 4 12 12 O 1.21610 * 119.99492 * 90.00182 * 11 10 5 13 13 N 1.34769 * 119.99930 * 269.99457 * 11 10 5 14 14 C 1.46498 * 120.00053 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47610 * 180.02562 * 14 13 11 16 16 H 1.09004 * 112.84650 * 316.20668 * 15 14 13 17 17 C 1.53781 * 113.60934 * 87.50340 * 15 14 13 18 18 C 1.53787 * 87.07896 * 139.98512 * 17 15 14 19 19 H 1.09006 * 113.61432 * 89.11218 * 18 17 15 20 20 N 1.46498 * 113.61641 * 220.01980 * 18 17 15 21 21 C 1.36932 * 119.99697 * 252.49609 * 20 18 17 22 22 H 1.08001 * 120.00430 * 359.97438 * 21 20 18 23 23 C 1.38824 * 119.99852 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99790 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99629 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47104 * 89.99972 * 25 23 21 27 27 H 1.48498 * 109.46724 * 209.99769 * 25 23 21 28 28 H 1.48500 * 109.47613 * 329.99736 * 25 23 21 29 29 C 1.53774 * 113.61685 * 185.00265 * 15 14 13 30 30 H 1.08995 * 109.47040 * 270.04270 * 1 2 3 31 31 H 1.08999 * 109.47227 * 30.04720 * 1 2 3 32 32 H 1.09005 * 109.46378 * 150.04271 * 1 2 3 33 33 H 0.96999 * 120.00429 * 0.02562 * 13 11 10 34 34 H 1.09005 * 109.47663 * 300.00853 * 14 13 11 35 35 H 1.09006 * 109.46808 * 60.00394 * 14 13 11 36 36 H 1.09000 * 113.61800 * 254.52804 * 17 15 14 37 37 H 1.08991 * 113.61560 * 25.44091 * 17 15 14 38 38 H 0.96997 * 120.00170 * 72.49539 * 20 18 17 39 39 H 0.96997 * 119.99843 * 180.02562 * 24 23 21 40 40 H 1.08997 * 113.61664 * 334.57343 * 29 15 14 41 41 H 1.09001 * 113.61491 * 105.39076 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0065 5 6 3.6494 -0.6006 0.0013 6 6 4.9713 -1.3244 0.0023 7 9 5.3810 -1.5490 -1.3165 8 9 4.8314 -2.5501 0.6621 9 9 5.9286 -0.5463 0.6619 10 6 2.3992 -1.1696 0.0009 11 6 2.0402 -2.5992 0.0017 12 8 1.8914 -3.1881 1.0552 13 7 1.8768 -3.2536 -1.1651 14 6 1.5205 -4.6746 -1.1644 15 6 1.3976 -5.1704 -2.6066 16 1 0.8558 -4.4756 -3.2483 17 6 2.7277 -5.6563 -3.2062 18 6 1.9274 -6.7976 -3.8558 19 1 1.5312 -6.5479 -4.8401 20 7 2.6198 -8.0884 -3.8303 21 6 3.1423 -8.6079 -4.9845 22 1 3.0437 -8.0662 -5.9137 23 6 3.7989 -9.8308 -4.9603 24 7 4.3007 -10.3303 -6.0698 25 14 3.9688 -10.7679 -3.3533 26 1 2.8028 -11.6714 -3.1815 27 1 5.2177 -11.5708 -3.3783 28 1 4.0209 -9.8066 -2.2227 29 6 0.9068 -6.6234 -2.7187 30 1 -0.3633 0.0008 1.0276 31 1 -0.3633 0.8895 -0.5146 32 1 -0.3632 -0.8904 -0.5132 33 1 1.9957 -2.7839 -2.0055 34 1 2.2951 -5.2432 -0.6498 35 1 0.5686 -4.8102 -0.6508 36 1 3.1614 -4.9624 -3.9263 37 1 3.4451 -5.9962 -2.4594 38 1 2.7080 -8.5750 -2.9959 39 1 4.7591 -11.1850 -6.0529 40 1 1.1263 -7.2277 -1.8385 41 1 -0.1300 -6.7102 -3.0438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086212040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:39 Heat of formation + Delta-G solvation = -106.005514 kcal Electronic energy + Delta-G solvation = -30621.380992 eV Core-core repulsion = 25704.414538 eV Total energy + Delta-G solvation = -4916.966453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.58722 -49.13054 -49.05797 -46.44591 -41.07002 -39.87837 -36.23091 -36.04971 -35.10726 -34.34416 -32.74756 -30.08153 -29.36372 -27.90729 -26.45301 -26.07179 -25.10187 -22.65785 -22.41014 -22.05800 -20.88482 -20.14498 -20.01377 -19.74627 -19.34130 -19.01997 -18.78291 -17.45580 -17.21991 -16.72521 -16.38027 -16.04878 -15.89694 -15.85516 -15.74063 -15.46074 -15.17952 -15.17180 -15.11560 -14.74603 -14.70842 -14.52308 -14.40555 -14.08803 -13.96951 -13.55691 -13.23165 -13.19657 -13.05739 -12.74690 -12.68586 -12.14325 -12.00451 -11.82971 -11.64771 -11.45076 -11.37269 -11.29530 -11.09436 -10.85737 -10.28616 -9.25215 -8.01996 -5.34056 -0.63790 0.36189 0.45163 0.97589 1.38450 1.41077 1.48287 1.57187 1.84092 2.16031 2.48841 2.70450 2.82425 2.86757 3.03601 3.28702 3.45945 3.51446 3.60212 3.71664 3.86125 4.09910 4.17235 4.28931 4.38003 4.54388 4.55804 4.61261 4.74090 4.94972 4.98501 5.01554 5.05050 5.13972 5.27541 5.39069 5.66367 5.79563 6.19536 6.24271 6.58188 6.83161 7.09532 7.88267 8.05247 9.19719 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002555 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.402540 B =10956.278726 C =11875.262428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.070 3.930 3 N -0.338 5.338 4 O 0.135 5.865 5 C -0.090 4.090 6 C 0.565 3.435 7 F -0.152 7.152 8 F -0.156 7.156 9 F -0.155 7.155 10 C -0.175 4.175 11 C 0.590 3.410 12 O -0.544 6.544 13 N -0.694 5.694 14 C 0.135 3.865 15 C -0.097 4.097 16 H 0.124 0.876 17 C -0.159 4.159 18 C 0.144 3.856 19 H 0.078 0.922 20 N -0.744 5.744 21 C -0.230 4.230 22 H 0.059 0.941 23 C -0.067 4.067 24 N -0.985 5.985 25 Si 0.953 3.047 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.253 1.253 29 C -0.133 4.133 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.418 0.582 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.365 0.635 39 H 0.257 0.743 40 H 0.078 0.922 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 25.947 14.821 30.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 N -0.040 5.040 4 O 0.068 5.932 5 C -0.156 4.156 6 C 0.509 3.491 7 F -0.133 7.133 8 F -0.137 7.137 9 F -0.136 7.136 10 C -0.183 4.183 11 C 0.373 3.627 12 O -0.422 6.422 13 N -0.345 5.345 14 C 0.012 3.988 15 C -0.116 4.116 16 H 0.142 0.858 17 C -0.200 4.200 18 C 0.035 3.965 19 H 0.096 0.904 20 N -0.385 5.385 21 C -0.361 4.361 22 H 0.077 0.923 23 C -0.258 4.258 24 N -0.636 5.636 25 Si 0.781 3.219 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.178 1.178 29 C -0.172 4.172 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.255 0.745 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.198 0.802 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.195 26.767 15.316 31.909 hybrid contribution 1.021 -1.639 0.168 1.939 sum -7.174 25.128 15.484 30.375 Atomic orbital electron populations 1.20567 0.81488 1.06307 1.05671 1.25395 1.00372 0.84195 0.99134 1.73677 0.88739 1.23199 1.18401 1.84676 1.22081 1.19520 1.66952 1.24183 0.94990 0.86920 1.09486 1.16518 0.80759 0.76685 0.75150 1.93342 1.90741 1.94598 1.34613 1.93348 1.95561 1.43940 1.80900 1.93301 1.65323 1.74218 1.80756 1.22245 0.91912 0.96471 1.07656 1.16864 0.77637 0.83608 0.84619 1.90884 1.51178 1.67891 1.32252 1.45880 1.68763 1.11938 1.07951 1.21483 1.01250 0.78830 0.97225 1.22491 0.97634 0.96800 0.94663 0.85848 1.23788 0.96816 0.99224 1.00163 1.21954 0.92890 0.84204 0.97462 0.90413 1.42797 1.67163 1.22101 1.06482 1.19132 1.27115 1.01374 0.88511 0.92294 1.25513 1.01082 0.99096 1.00133 1.69881 1.44607 1.20860 1.28277 0.85436 0.77005 0.78886 0.80608 1.20364 1.22579 1.17761 1.23345 0.99912 0.95169 0.98817 0.87988 0.87526 0.87968 0.74530 0.92308 0.89759 0.91794 0.91708 0.80154 0.93444 0.90298 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.49 71.24 0.75 0.13 16 2 C 0.07 1.02 7.59 45.16 0.34 1.36 16 3 N -0.34 -5.79 12.01 -44.78 -0.54 -6.32 16 4 O 0.13 2.35 11.06 77.07 0.85 3.21 16 5 C -0.09 -1.60 6.85 25.48 0.17 -1.42 16 6 C 0.56 10.34 3.52 71.24 0.25 10.59 16 7 F -0.15 -2.76 17.30 44.97 0.78 -1.98 16 8 F -0.16 -3.45 16.09 44.97 0.72 -2.73 16 9 F -0.15 -2.73 17.30 44.97 0.78 -1.95 16 10 C -0.18 -3.10 6.19 -18.74 -0.12 -3.21 16 11 C 0.59 12.01 6.59 86.66 0.57 12.58 16 12 O -0.54 -15.23 17.11 -4.06 -0.07 -15.30 16 13 N -0.69 -11.11 5.55 -466.39 -2.59 -13.70 16 14 C 0.13 2.45 5.51 86.38 0.48 2.92 16 15 C -0.10 -1.79 3.75 -10.27 -0.04 -1.83 16 16 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 17 C -0.16 -4.33 7.43 31.12 0.23 -4.10 16 18 C 0.14 4.79 4.48 45.52 0.20 4.99 16 19 H 0.08 2.68 8.10 -2.38 -0.02 2.66 16 20 N -0.74 -33.19 5.20 -320.42 -1.67 -34.86 16 21 C -0.23 -12.83 10.45 84.04 0.88 -11.95 16 22 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 23 C -0.07 -3.92 5.50 84.87 0.47 -3.46 16 24 N -0.99 -63.03 13.97 21.65 0.30 -62.73 16 25 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 29 C -0.13 -3.16 7.39 31.12 0.23 -2.93 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.42 4.70 8.46 -92.71 -0.78 3.91 16 34 H 0.06 1.32 7.84 -2.38 -0.02 1.31 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16 38 H 0.37 15.76 5.78 -92.71 -0.54 15.23 16 39 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.78 369.33 4.63 -68.16 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.26 Total: 17.35 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.42 Total: 3.68 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -4.49 Total: -117.61 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.78 Total: -12.09 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 2.28 Total: -6.66 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -72.78 4.63 -68.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086212040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.850 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds