Wall clock time and date at job start Wed Apr 1 2020 04:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00204 * 2 1 4 4 H 1.48504 * 109.47067 * 240.00309 * 3 2 1 5 5 H 1.48504 * 109.46892 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47436 * 120.00101 * 3 2 1 7 7 C 1.38814 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00083 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.01780 * 33.60688 * 10 9 7 12 12 C 1.54268 * 110.03403 * 272.16371 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32820 * 12 10 9 14 14 C 1.54890 * 102.74680 * 322.05824 * 13 12 10 15 15 H 1.09005 * 110.59542 * 279.20547 * 14 13 12 16 16 C 1.52999 * 110.48908 * 156.62462 * 14 13 12 17 17 N 1.46505 * 109.47192 * 70.22042 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21583 * 120.00271 * 359.97438 * 18 17 16 20 20 C 1.47512 * 119.99606 * 179.72699 * 18 17 16 21 21 C 1.36826 * 126.94169 * 179.97438 * 20 18 17 22 22 C 1.41264 * 103.84276 * 179.97438 * 21 20 18 23 23 C 1.50703 * 126.70197 * 180.08355 * 22 21 20 24 24 F 1.39902 * 109.47031 * 185.27596 * 23 22 21 25 25 F 1.39901 * 109.47025 * 305.27517 * 23 22 21 26 26 F 1.39900 * 109.47365 * 65.27395 * 23 22 21 27 27 N 1.30126 * 106.59383 * 0.33560 * 22 21 20 28 28 O 1.20891 * 111.98026 * 359.77842 * 27 22 21 29 29 C 1.53877 * 110.03212 * 154.99804 * 10 9 7 30 30 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99395 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.48088 * 23.00744 * 12 10 9 33 33 H 1.09003 * 110.48519 * 145.51612 * 12 10 9 34 34 H 1.09005 * 110.75534 * 203.74282 * 13 12 10 35 35 H 1.08998 * 110.76004 * 80.36733 * 13 12 10 36 36 H 1.09003 * 109.46803 * 310.22712 * 16 14 13 37 37 H 1.08993 * 109.47533 * 190.22431 * 16 14 13 38 38 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 39 39 H 1.07999 * 128.07518 * 0.02704 * 21 20 18 40 40 H 1.09000 * 110.03023 * 359.97438 * 29 10 9 41 41 H 1.09000 * 110.03119 * 238.57427 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9832 -3.5534 0.5674 12 6 2.3697 -4.0871 -1.4478 13 6 1.2214 -5.0614 -1.8100 14 6 0.9996 -5.8353 -0.4868 15 1 1.7391 -6.6287 -0.3780 16 6 -0.4159 -6.4138 -0.4355 17 7 -0.5328 -7.5052 -1.4058 18 6 -1.6992 -8.1675 -1.5376 19 8 -2.6542 -7.8596 -0.8510 20 6 -1.8187 -9.2625 -2.5189 21 6 -2.9268 -10.0251 -2.7692 22 6 -2.5045 -10.9120 -3.7843 23 6 -3.3326 -11.9830 -4.4465 24 9 -2.5255 -12.7267 -5.3141 25 9 -3.8694 -12.8282 -3.4694 26 9 -4.3715 -11.3884 -5.1705 27 7 -1.2592 -10.6272 -4.0322 28 8 -0.8575 -9.7177 -3.3445 29 6 1.1869 -4.7684 0.6116 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.3611 -3.2233 -2.1125 33 1 3.3330 -4.5949 -1.4959 34 1 1.5268 -5.7390 -2.6073 35 1 0.3229 -4.5121 -2.0913 36 1 -1.1365 -5.6329 -0.6785 37 1 -0.6167 -6.7948 0.5658 38 1 0.2292 -7.7511 -1.9533 39 1 -3.8979 -9.9629 -2.3006 40 1 0.2193 -4.3638 0.9085 41 1 1.6898 -5.2050 1.4745 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086725732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:39 Heat of formation + Delta-G solvation = -115.763604 kcal Electronic energy + Delta-G solvation = -29391.232102 eV Core-core repulsion = 24473.842506 eV Total energy + Delta-G solvation = -4917.389596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.81359 -48.32978 -48.31089 -46.00196 -40.13692 -38.25664 -35.58778 -35.03148 -33.48155 -32.83836 -30.74879 -29.12173 -27.89961 -27.49868 -25.38651 -23.98236 -23.44184 -23.12114 -21.42817 -20.33921 -19.52403 -19.35983 -19.13932 -18.88504 -18.46723 -17.77650 -17.13891 -16.68634 -16.51519 -15.70672 -15.20976 -15.16153 -15.06709 -14.88170 -14.71215 -14.61295 -14.42937 -14.42679 -14.25893 -13.78485 -13.57267 -13.26781 -13.18091 -12.73526 -12.65354 -12.36291 -11.64434 -11.47880 -11.25401 -11.03636 -10.77425 -10.69680 -10.62887 -10.57082 -10.56272 -10.33558 -10.23169 -9.97596 -9.64550 -9.43883 -8.89701 -6.95859 -5.77933 -3.06364 0.04068 0.82889 1.55378 1.87928 2.47375 2.61323 2.72638 3.13513 3.42628 3.47434 3.48282 3.63276 3.86040 3.95340 4.26016 4.36093 4.57000 4.73993 4.84797 4.95238 5.00311 5.44927 5.49261 5.60641 5.63689 5.80361 5.87390 5.94858 6.04283 6.08355 6.18130 6.28412 6.41474 6.61160 6.69203 6.80737 6.87034 7.06592 7.11141 7.55243 7.69337 8.41404 9.52009 10.11091 10.44778 11.44541 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026455 B = 0.001695 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.164574 B =16519.014213 C =16638.106821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.104 4.104 15 H 0.078 0.922 16 C 0.123 3.877 17 N -0.704 5.704 18 C 0.601 3.399 19 O -0.502 6.502 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.088 4.088 23 C 0.561 3.439 24 F -0.162 7.162 25 F -0.160 7.160 26 F -0.160 7.160 27 N -0.288 5.288 28 O 0.156 5.844 29 C -0.121 4.121 30 H 0.256 0.744 31 H 0.383 0.617 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.408 0.592 39 H 0.199 0.801 40 H 0.073 0.927 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 -26.110 -6.919 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.096 0.904 16 C 0.001 3.999 17 N -0.354 5.354 18 C 0.383 3.617 19 O -0.377 6.377 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.246 4.246 23 C 0.505 3.495 24 F -0.143 7.143 25 F -0.142 7.142 26 F -0.141 7.141 27 N 0.022 4.978 28 O 0.069 5.931 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.243 0.757 39 H 0.216 0.784 40 H 0.092 0.908 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.065 -26.286 -7.278 27.576 hybrid contribution -0.251 0.773 -0.094 0.818 sum -4.316 -25.512 -7.372 26.905 Atomic orbital electron populations 1.69641 1.05080 1.25773 1.57599 1.24739 0.95503 0.97674 1.03056 0.86290 0.78530 0.83671 0.77812 1.21329 1.21743 1.21306 1.19206 0.90973 0.84218 1.42738 0.91276 1.42533 1.05637 0.99690 1.88301 1.20799 0.94159 0.86066 0.92614 0.93326 1.23124 0.96008 0.98654 1.00924 1.22529 1.00150 0.97493 0.95060 1.22266 0.94213 0.98010 0.97863 0.90399 1.21761 0.98488 0.88007 0.91633 1.45976 1.12832 1.35275 1.41363 1.16385 0.84254 0.79956 0.81129 1.90941 1.37750 1.65025 1.43975 1.24509 0.88956 1.01324 0.98164 1.22693 1.01682 0.92960 0.96155 1.23434 0.94038 1.03613 1.03491 1.16577 0.77465 0.79167 0.76278 1.93273 1.72869 1.77763 1.70370 1.93280 1.86566 1.71953 1.62355 1.93288 1.59117 1.83581 1.78156 1.73851 1.11753 1.01211 1.10943 1.85046 1.36005 1.35156 1.36881 1.22470 1.01590 0.95345 0.96587 0.93467 0.78269 0.90917 0.93257 0.92813 0.91181 0.90053 0.90696 0.75655 0.78363 0.90786 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.45 9.96 -15.05 -0.15 -6.60 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.10 5.08 -52.34 -0.27 -17.37 16 10 C 0.17 3.16 3.55 -66.81 -0.24 2.93 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.15 -2.33 6.54 -25.07 -0.16 -2.50 16 13 C -0.11 -1.46 6.19 -24.74 -0.15 -1.62 16 14 C -0.10 -1.15 2.89 -88.96 -0.26 -1.41 16 15 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 16 C 0.12 1.29 4.96 -4.04 -0.02 1.27 16 17 N -0.70 -6.11 5.44 -61.36 -0.33 -6.44 16 18 C 0.60 6.00 7.82 -12.48 -0.10 5.90 16 19 O -0.50 -6.68 16.91 5.29 0.09 -6.59 16 20 C -0.06 -0.53 7.29 -36.31 -0.26 -0.80 16 21 C -0.11 -0.87 10.92 -38.94 -0.43 -1.30 16 22 C -0.09 -0.75 6.58 -82.16 -0.54 -1.29 16 23 C 0.56 4.46 3.53 36.01 0.13 4.59 16 24 F -0.16 -1.42 17.17 2.25 0.04 -1.39 16 25 F -0.16 -1.23 17.30 2.25 0.04 -1.19 16 26 F -0.16 -1.29 17.30 2.25 0.04 -1.25 16 27 N -0.29 -2.67 11.86 33.52 0.40 -2.27 16 28 O 0.16 1.27 11.04 15.55 0.17 1.44 16 29 C -0.12 -1.72 6.14 -25.62 -0.16 -1.88 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.38 9.71 7.52 -40.82 -0.31 9.41 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 36 H 0.08 1.00 8.02 -51.93 -0.42 0.59 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 2.63 8.27 -40.82 -0.34 2.29 16 39 H 0.20 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.07 1.16 7.31 -51.93 -0.38 0.78 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -30.74 368.01 -5.79 -36.53 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.77 Total: 6.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.44 Total: -3.18 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.52 Total: -52.99 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: 0.26 Total: -5.15 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.12 Total: -3.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.74 -5.79 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086725732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.234 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds