Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99813 * 2 1 4 4 H 1.48502 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47273 * 299.99790 * 3 2 1 6 6 H 1.48504 * 109.47256 * 60.00247 * 3 2 1 7 7 C 1.38810 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00590 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00087 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.67308 * 36.78183 * 10 9 7 12 12 C 1.54892 * 110.75447 * 273.54785 * 10 9 7 13 13 C 1.54270 * 104.19367 * 203.55732 * 12 10 9 14 14 C 1.53879 * 106.59978 * 23.60889 * 13 12 10 15 15 H 1.08991 * 110.03276 * 240.66360 * 14 13 12 16 16 C 1.53002 * 110.03146 * 119.28169 * 14 13 12 17 17 N 1.46506 * 109.47042 * 66.45881 * 16 14 13 18 18 C 1.34773 * 119.99969 * 180.02562 * 17 16 14 19 19 O 1.21682 * 120.00057 * 359.71665 * 18 17 16 20 20 C 1.46726 * 119.99852 * 179.97438 * 18 17 16 21 21 O 1.35346 * 126.64251 * 359.40623 * 20 18 17 22 22 C 1.33660 * 107.68180 * 179.87763 * 21 20 18 23 23 N 1.30613 * 109.15642 * 0.39720 * 22 21 20 24 24 C 1.33695 * 108.99476 * 359.75438 * 23 22 21 25 25 C 1.50698 * 126.27229 * 180.02562 * 24 23 22 26 26 F 1.39895 * 109.47303 * 269.97292 * 25 24 23 27 27 F 1.39902 * 109.47385 * 29.97673 * 25 24 23 28 28 F 1.39905 * 109.47124 * 149.97268 * 25 24 23 29 29 C 1.54268 * 106.59450 * 0.02562 * 14 13 12 30 30 H 0.97001 * 120.00316 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00198 * 0.02562 * 9 7 2 32 32 H 1.08996 * 110.48944 * 84.88512 * 12 10 9 33 33 H 1.08999 * 110.60192 * 322.28532 * 12 10 9 34 34 H 1.08999 * 110.03534 * 264.32403 * 13 12 10 35 35 H 1.08997 * 110.03229 * 142.89296 * 13 12 10 36 36 H 1.09004 * 109.47503 * 306.45940 * 16 14 13 37 37 H 1.09001 * 109.46939 * 186.45340 * 16 14 13 38 38 H 0.96998 * 119.99501 * 359.97438 * 17 16 14 39 39 H 1.08008 * 125.42256 * 180.12809 * 22 21 20 40 40 H 1.09004 * 110.48765 * 95.06920 * 29 14 13 41 41 H 1.09008 * 110.48430 * 217.70821 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6112 12 6 2.4101 -4.0873 -1.4451 13 6 2.5944 -5.6160 -1.3502 14 6 1.7971 -6.0793 -0.1183 15 1 2.4654 -6.5467 0.6048 16 6 0.7081 -7.0678 -0.5402 17 7 1.3306 -8.2970 -1.0381 18 6 0.5605 -9.3157 -1.4687 19 8 -0.6519 -9.2166 -1.4392 20 6 1.1840 -10.5466 -1.9679 21 8 2.5103 -10.7980 -2.0657 22 6 2.6544 -12.0298 -2.5640 23 7 1.4740 -12.5436 -2.7847 24 6 0.5396 -11.6562 -2.4286 25 6 -0.9524 -11.8476 -2.5191 26 9 -1.4044 -11.4061 -3.7673 27 9 -1.2588 -13.2040 -2.3653 28 9 -1.5793 -11.1105 -1.5087 29 6 1.1556 -4.8160 0.4920 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 3.3350 -3.6111 -1.7704 33 1 1.5958 -3.8429 -2.1271 34 1 3.6497 -5.8578 -1.2245 35 1 2.2055 -6.0954 -2.2486 36 1 0.0997 -6.6237 -1.3282 37 1 0.0776 -7.3016 0.3176 38 1 2.2971 -8.3772 -1.0585 39 1 3.5969 -12.5205 -2.7577 40 1 0.1372 -4.6897 0.1245 41 1 1.1653 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086766677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = -150.197143 kcal Electronic energy + Delta-G solvation = -30192.723683 eV Core-core repulsion = 25273.840936 eV Total energy + Delta-G solvation = -4918.882746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.35846 -47.91127 -47.79365 -44.34758 -40.11805 -38.26792 -36.11971 -35.14139 -33.51027 -31.99146 -30.79062 -29.21990 -27.73600 -26.94140 -25.05162 -24.01250 -23.14082 -22.66736 -21.37368 -20.10304 -19.60372 -19.27611 -18.84200 -18.52722 -18.18869 -17.58722 -17.13217 -16.54468 -16.47709 -15.87866 -15.20242 -15.08642 -14.93842 -14.73268 -14.49658 -14.45808 -14.22382 -13.95481 -13.90118 -13.85251 -13.43241 -12.99359 -12.90008 -12.80053 -12.44773 -12.31319 -11.93021 -11.70078 -11.21539 -10.99563 -10.83580 -10.78784 -10.63114 -10.58583 -10.36943 -10.17291 -10.09171 -9.88612 -9.70005 -9.46083 -8.91204 -6.97518 -5.79335 -3.08198 -0.12679 1.46818 1.49170 2.10113 2.41897 2.58615 3.07735 3.37958 3.41079 3.46580 3.48996 3.84725 4.04355 4.24037 4.40419 4.54795 4.57552 4.67436 4.80568 4.94613 5.10404 5.40331 5.44483 5.55601 5.60698 5.76253 5.82749 5.87488 5.95023 6.03753 6.19111 6.24784 6.38246 6.50281 6.51395 6.63391 6.80730 6.92548 7.06253 7.51579 7.68396 8.39503 9.50513 10.08864 10.42731 11.43327 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.001931 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.676704 B =14494.259989 C =15130.745510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.144 4.144 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.076 0.924 16 C 0.123 3.877 17 N -0.704 5.704 18 C 0.589 3.411 19 O -0.485 6.485 20 C -0.023 4.023 21 O -0.175 6.175 22 C 0.216 3.784 23 N -0.459 5.459 24 C -0.032 4.032 25 C 0.551 3.449 26 F -0.166 7.166 27 F -0.167 7.167 28 F -0.139 7.139 29 C -0.121 4.121 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.270 0.730 40 H 0.071 0.929 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 -28.059 -4.204 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.067 3.933 11 H 0.071 0.929 12 C -0.185 4.185 13 C -0.160 4.160 14 C -0.121 4.121 15 H 0.094 0.906 16 C 0.001 3.999 17 N -0.354 5.354 18 C 0.371 3.629 19 O -0.360 6.360 20 C -0.082 4.082 21 O -0.060 6.060 22 C -0.010 4.010 23 N -0.185 5.185 24 C -0.157 4.157 25 C 0.496 3.504 26 F -0.147 7.147 27 F -0.148 7.148 28 F -0.120 7.120 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.242 0.758 39 H 0.286 0.714 40 H 0.090 0.910 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.369 -28.363 -4.388 29.198 hybrid contribution 0.820 1.281 0.018 1.521 sum 6.188 -27.081 -4.370 28.121 Atomic orbital electron populations 1.69665 1.05105 1.25591 1.57669 1.24755 0.95519 0.97733 1.03008 0.86136 0.78762 0.84192 0.77202 1.20580 1.21881 1.21863 1.19277 0.91007 0.84118 1.42625 0.91154 1.42388 1.05772 0.99766 1.88183 1.21150 0.93882 0.85592 0.92718 0.92912 1.23079 1.01413 0.92522 1.01439 1.22235 0.99026 0.98162 0.96595 1.21984 0.96302 0.95663 0.98102 0.90572 1.21802 0.95960 0.82247 0.99864 1.45967 1.10537 1.15669 1.63272 1.16359 0.86539 0.80747 0.79252 1.91065 1.11585 1.79162 1.54180 1.23263 0.80652 0.98413 1.05868 1.84610 1.25051 1.33882 1.62437 1.28555 0.99374 0.79448 0.93585 1.70197 0.98391 1.30376 1.19532 1.21742 0.95576 0.92466 1.05966 1.16729 0.83912 0.74558 0.75204 1.93252 1.90048 1.89323 1.42058 1.93237 1.93879 1.32323 1.95339 1.93411 1.83179 1.76027 1.59344 1.22576 1.00193 0.93263 0.99974 0.93520 0.78172 0.92548 0.91742 0.92311 0.92415 0.90201 0.90532 0.75822 0.71432 0.91023 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.49 5.26 -51.49 -0.27 -17.76 16 10 C 0.18 3.27 3.53 -65.93 -0.23 3.04 16 11 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 12 C -0.14 -2.35 6.51 -25.07 -0.16 -2.51 16 13 C -0.12 -1.43 6.13 -25.61 -0.16 -1.58 16 14 C -0.10 -1.11 2.98 -89.50 -0.27 -1.37 16 15 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 16 C 0.12 1.30 4.70 -4.04 -0.02 1.28 16 17 N -0.70 -6.37 5.29 -61.60 -0.33 -6.70 16 18 C 0.59 6.47 7.74 -12.83 -0.10 6.37 16 19 O -0.49 -6.87 13.14 5.20 0.07 -6.80 16 20 C -0.02 -0.22 7.14 -36.84 -0.26 -0.48 16 21 O -0.17 -1.10 10.57 4.43 0.05 -1.05 16 22 C 0.22 0.98 13.21 52.24 0.69 1.67 16 23 N -0.46 -4.01 11.21 -10.89 -0.12 -4.13 16 24 C -0.03 -0.34 6.49 -82.47 -0.54 -0.88 16 25 C 0.55 6.48 3.34 36.00 0.12 6.60 16 26 F -0.17 -2.03 17.30 2.25 0.04 -1.99 16 27 F -0.17 -1.91 17.27 2.25 0.04 -1.87 16 28 F -0.14 -1.81 13.47 2.25 0.03 -1.78 16 29 C -0.12 -1.77 5.97 -25.06 -0.15 -1.92 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.96 7.73 -40.82 -0.32 9.64 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.64 7.58 -51.93 -0.39 0.25 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.41 2.75 8.10 -40.82 -0.33 2.42 16 39 H 0.27 -0.39 8.06 -52.48 -0.42 -0.81 16 40 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 41 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -33.46 361.13 -5.47 -38.93 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.79 Total: 4.70 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.32 Total: 3.08 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.01 Total: -55.74 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.12 Total: -7.85 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.11 Total: -5.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.46 -5.47 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086766677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.267 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds