Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99813 * 2 1 4 4 H 1.48502 * 109.46790 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47273 * 299.99790 * 3 2 1 6 6 H 1.48504 * 109.47256 * 60.00247 * 3 2 1 7 7 C 1.38810 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00590 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00087 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.67308 * 36.78183 * 10 9 7 12 12 C 1.54892 * 110.75447 * 273.54785 * 10 9 7 13 13 C 1.54270 * 104.19367 * 203.55732 * 12 10 9 14 14 C 1.53879 * 106.59978 * 23.60889 * 13 12 10 15 15 H 1.08991 * 110.03276 * 240.66360 * 14 13 12 16 16 C 1.53002 * 110.03146 * 119.28169 * 14 13 12 17 17 N 1.46506 * 109.47042 * 66.45881 * 16 14 13 18 18 C 1.34773 * 119.99969 * 180.02562 * 17 16 14 19 19 O 1.21682 * 120.00057 * 359.71665 * 18 17 16 20 20 C 1.46726 * 119.99852 * 179.97438 * 18 17 16 21 21 O 1.35346 * 126.64251 * 359.40623 * 20 18 17 22 22 C 1.33660 * 107.68180 * 179.87763 * 21 20 18 23 23 N 1.30613 * 109.15642 * 0.39720 * 22 21 20 24 24 C 1.33695 * 108.99476 * 359.75438 * 23 22 21 25 25 C 1.50698 * 126.27229 * 180.02562 * 24 23 22 26 26 F 1.39895 * 109.47303 * 269.97292 * 25 24 23 27 27 F 1.39902 * 109.47385 * 29.97673 * 25 24 23 28 28 F 1.39905 * 109.47124 * 149.97268 * 25 24 23 29 29 C 1.54268 * 106.59450 * 0.02562 * 14 13 12 30 30 H 0.97001 * 120.00316 * 0.02562 * 1 2 3 31 31 H 0.97003 * 120.00198 * 0.02562 * 9 7 2 32 32 H 1.08996 * 110.48944 * 84.88512 * 12 10 9 33 33 H 1.08999 * 110.60192 * 322.28532 * 12 10 9 34 34 H 1.08999 * 110.03534 * 264.32403 * 13 12 10 35 35 H 1.08997 * 110.03229 * 142.89296 * 13 12 10 36 36 H 1.09004 * 109.47503 * 306.45940 * 16 14 13 37 37 H 1.09001 * 109.46939 * 186.45340 * 16 14 13 38 38 H 0.96998 * 119.99501 * 359.97438 * 17 16 14 39 39 H 1.08008 * 125.42256 * 180.12809 * 22 21 20 40 40 H 1.09004 * 110.48765 * 95.06920 * 29 14 13 41 41 H 1.09008 * 110.48430 * 217.70821 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6112 12 6 2.4101 -4.0873 -1.4451 13 6 2.5944 -5.6160 -1.3502 14 6 1.7971 -6.0793 -0.1183 15 1 2.4654 -6.5467 0.6048 16 6 0.7081 -7.0678 -0.5402 17 7 1.3306 -8.2970 -1.0381 18 6 0.5605 -9.3157 -1.4687 19 8 -0.6519 -9.2166 -1.4392 20 6 1.1840 -10.5466 -1.9679 21 8 2.5103 -10.7980 -2.0657 22 6 2.6544 -12.0298 -2.5640 23 7 1.4740 -12.5436 -2.7847 24 6 0.5396 -11.6562 -2.4286 25 6 -0.9524 -11.8476 -2.5191 26 9 -1.4044 -11.4061 -3.7673 27 9 -1.2588 -13.2040 -2.3653 28 9 -1.5793 -11.1105 -1.5087 29 6 1.1556 -4.8160 0.4920 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 3.3350 -3.6111 -1.7704 33 1 1.5958 -3.8429 -2.1271 34 1 3.6497 -5.8578 -1.2245 35 1 2.2055 -6.0954 -2.2486 36 1 0.0997 -6.6237 -1.3282 37 1 0.0776 -7.3016 0.3176 38 1 2.2971 -8.3772 -1.0585 39 1 3.5969 -12.5205 -2.7577 40 1 0.1372 -4.6897 0.1245 41 1 1.1653 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086766677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = -176.191114 kcal Electronic energy + Delta-G solvation = -30193.850866 eV Core-core repulsion = 25273.840936 eV Total energy + Delta-G solvation = -4920.009929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.27071 -48.82448 -48.72788 -44.89750 -40.98320 -39.44305 -36.79600 -36.28788 -35.07159 -32.87645 -32.33979 -30.37906 -28.96673 -27.97173 -26.10923 -25.08070 -24.55103 -23.40298 -22.17427 -21.24302 -20.77699 -20.13375 -19.72723 -19.43372 -19.18355 -18.85402 -18.18302 -17.40767 -17.07244 -16.81557 -16.72257 -16.08285 -15.82788 -15.72521 -15.59215 -15.35778 -15.27703 -15.18551 -15.06919 -14.89361 -14.73716 -14.31498 -14.08922 -13.65244 -13.56777 -13.36376 -13.03742 -12.97173 -12.69037 -12.35999 -12.29177 -12.08255 -11.99082 -11.80830 -11.68725 -11.58084 -11.41908 -11.22410 -10.89504 -10.75576 -10.26089 -8.96629 -7.93396 -5.21176 -0.77798 0.84938 0.98070 1.36149 1.47439 1.47920 1.57812 1.62500 1.88433 2.33736 2.57021 2.64462 3.15142 3.28953 3.39430 3.51493 3.64704 3.73043 3.79398 3.80957 4.01784 4.31262 4.38397 4.47939 4.63998 4.65562 4.77242 4.79942 4.80570 4.86870 5.08947 5.11922 5.15477 5.23115 5.45720 5.51621 5.55503 5.66515 5.96099 6.22265 6.29939 6.78341 7.35052 8.14476 8.35080 9.30562 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025136 B = 0.001931 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.676704 B =14494.259989 C =15130.745510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.053 0.947 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.084 4.084 15 H 0.107 0.893 16 C 0.130 3.870 17 N -0.688 5.688 18 C 0.589 3.411 19 O -0.526 6.526 20 C -0.031 4.031 21 O -0.163 6.163 22 C 0.256 3.744 23 N -0.497 5.497 24 C -0.044 4.044 25 C 0.545 3.455 26 F -0.174 7.174 27 F -0.168 7.168 28 F -0.150 7.150 29 C -0.116 4.116 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.421 0.579 39 H 0.329 0.671 40 H 0.056 0.944 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 -30.016 -4.243 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.054 3.946 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.147 4.147 14 C -0.103 4.103 15 H 0.125 0.875 16 C 0.007 3.993 17 N -0.339 5.339 18 C 0.372 3.628 19 O -0.403 6.403 20 C -0.091 4.091 21 O -0.049 6.049 22 C 0.031 3.969 23 N -0.223 5.223 24 C -0.168 4.168 25 C 0.490 3.510 26 F -0.155 7.155 27 F -0.150 7.150 28 F -0.131 7.131 29 C -0.154 4.154 30 H 0.058 0.942 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.259 0.741 39 H 0.343 0.657 40 H 0.075 0.925 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.818 -30.374 -4.432 31.937 hybrid contribution -0.135 1.764 0.005 1.769 sum 8.684 -28.609 -4.427 30.224 Atomic orbital electron populations 1.69823 1.06642 1.25839 1.60011 1.25560 0.96359 1.01122 1.04235 0.85109 0.78358 0.80042 0.76502 1.18834 1.22376 1.22204 1.19669 0.91431 0.85287 1.40206 0.90547 1.42632 1.05410 1.01206 1.88355 1.21485 0.94192 0.84570 0.94315 0.92860 1.22905 0.99939 0.96237 0.98956 1.22168 1.01042 0.94173 0.97352 1.21845 0.96284 0.93961 0.98200 0.87455 1.21587 0.95713 0.82660 0.99321 1.45744 1.11152 1.14606 1.62416 1.16501 0.86175 0.81331 0.78792 1.91048 1.13366 1.80081 1.55838 1.22722 0.81830 0.97574 1.06956 1.84637 1.23046 1.34699 1.62488 1.29926 0.99927 0.77953 0.89102 1.70215 0.99427 1.30960 1.21657 1.21576 0.94891 0.93498 1.06815 1.16958 0.85121 0.74272 0.74648 1.93226 1.90339 1.89417 1.42505 1.93222 1.94050 1.32386 1.95312 1.93383 1.83638 1.76321 1.59780 1.22472 0.98908 0.93543 1.00525 0.94176 0.79714 0.93261 0.94321 0.89387 0.91395 0.91961 0.90679 0.74051 0.65684 0.92493 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.23 -12.80 9.98 84.03 0.84 -11.96 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.44 5.26 -316.82 -1.67 -38.10 16 10 C 0.16 5.93 3.53 46.29 0.16 6.09 16 11 H 0.05 1.94 8.12 -2.39 -0.02 1.92 16 12 C -0.14 -4.45 6.51 31.67 0.21 -4.24 16 13 C -0.11 -2.22 6.13 31.32 0.19 -2.03 16 14 C -0.08 -1.60 2.98 -10.07 -0.03 -1.63 16 15 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.13 2.53 4.70 86.38 0.41 2.93 16 17 N -0.69 -10.78 5.29 -467.02 -2.47 -13.25 16 18 C 0.59 12.25 7.74 86.46 0.67 12.92 16 19 O -0.53 -15.03 13.14 -4.29 -0.06 -15.09 16 20 C -0.03 -0.53 7.14 24.05 0.17 -0.36 16 21 O -0.16 -1.42 10.57 -7.07 -0.07 -1.50 16 22 C 0.26 1.19 13.21 130.42 1.72 2.92 16 23 N -0.50 -7.47 11.21 -303.14 -3.40 -10.87 16 24 C -0.04 -0.87 6.49 41.83 0.27 -0.60 16 25 C 0.55 13.01 3.34 71.24 0.24 13.25 16 26 F -0.17 -4.38 17.30 44.97 0.78 -3.60 16 27 F -0.17 -3.92 17.27 44.97 0.78 -3.14 16 28 F -0.15 -4.07 13.47 44.97 0.61 -3.47 16 29 C -0.12 -3.26 5.97 31.68 0.19 -3.07 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 31 H 0.37 19.96 7.73 -92.71 -0.72 19.25 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.29 7.58 -2.39 -0.02 1.28 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.42 4.03 8.10 -92.71 -0.75 3.28 16 39 H 0.33 -3.09 8.06 -2.91 -0.02 -3.12 16 40 H 0.06 1.78 7.74 -2.39 -0.02 1.76 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -76.91 361.13 1.95 -74.96 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.36 Total: 15.53 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.50 Total: 10.05 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -7.25 Total: -121.75 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.13 Total: -16.58 kcal Atomic # 9 Polarization: -12.37 SS G_CDS: 2.16 Total: -10.21 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.91 1.95 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086766677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.235 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds