Wall clock time and date at job start Wed Apr 1 2020 04:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48502 * 109.46847 * 269.99713 * 3 2 1 5 5 H 1.48499 * 109.47374 * 29.99406 * 3 2 1 6 6 H 1.48494 * 109.47403 * 149.99816 * 3 2 1 7 7 C 1.38814 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99268 * 197.36075 * 7 2 1 9 9 N 1.36933 * 120.00536 * 17.35998 * 7 2 1 10 10 C 1.46923 * 120.63146 * 207.69900 * 9 7 2 11 11 C 1.53197 * 108.76100 * 233.59318 * 10 9 7 12 12 C 1.53039 * 109.31369 * 305.33987 * 11 10 9 13 13 H 1.08993 * 109.46371 * 301.37421 * 12 11 10 14 14 N 1.46497 * 109.46275 * 181.40030 * 12 11 10 15 15 C 1.34775 * 119.99861 * 84.97480 * 14 12 11 16 16 O 1.21490 * 120.00222 * 0.02562 * 15 14 12 17 17 C 1.48351 * 120.00070 * 180.02562 * 15 14 12 18 18 C 1.41716 * 126.81332 * 179.97438 * 17 15 14 19 19 C 1.37156 * 103.79684 * 179.97438 * 18 17 15 20 20 C 1.47007 * 126.86048 * 180.02562 * 19 18 17 21 21 C 1.36339 * 125.96820 * 179.97438 * 20 19 18 22 22 C 1.40696 * 106.72169 * 180.02562 * 21 20 19 23 23 C 1.34891 * 107.08012 * 359.97438 * 22 21 20 24 24 O 1.34222 * 108.73185 * 359.97438 * 23 22 21 25 25 O 1.34586 * 106.28150 * 0.26690 * 19 18 17 26 26 N 1.20878 * 111.69236 * 359.51881 * 25 19 18 27 27 C 1.53047 * 109.52418 * 61.38658 * 12 11 10 28 28 H 1.09005 * 109.49481 * 58.58279 * 27 12 11 29 29 O 1.42897 * 109.49679 * 178.67567 * 27 12 11 30 30 C 1.46931 * 120.62878 * 27.67167 * 9 7 2 31 31 H 0.97002 * 120.00431 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58489 * 353.36837 * 10 9 7 33 33 H 1.08992 * 109.58970 * 113.65589 * 10 9 7 34 34 H 1.09009 * 109.48450 * 185.39788 * 11 10 9 35 35 H 1.08994 * 109.51024 * 65.30268 * 11 10 9 36 36 H 0.97004 * 120.00175 * 264.97655 * 14 12 11 37 37 H 1.08000 * 128.10234 * 0.02562 * 18 17 15 38 38 H 1.08005 * 126.63964 * 0.05839 * 21 20 19 39 39 H 1.08000 * 126.46042 * 180.02562 * 22 21 20 40 40 H 1.08001 * 125.63272 * 179.97438 * 23 22 21 41 41 H 0.96704 * 114.00129 * 180.02562 * 29 27 12 42 42 H 1.09002 * 109.58386 * 6.63021 * 30 9 7 43 43 H 1.09004 * 109.70356 * 246.27330 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3723 -2.3613 -0.3528 10 6 1.8191 -3.6546 0.1823 11 6 2.0742 -4.6102 -0.9876 12 6 0.8184 -4.6906 -1.8586 13 1 -0.0206 -5.0367 -1.2550 14 7 1.0473 -5.6293 -2.9597 15 6 0.8463 -6.9489 -2.7731 16 8 0.4748 -7.3599 -1.6919 17 6 1.0787 -7.8996 -3.8880 18 6 0.9142 -9.3067 -3.8524 19 6 1.2520 -9.7077 -5.1198 20 6 1.2569 -11.0836 -5.6374 21 6 1.5961 -11.4620 -6.9026 22 6 1.4586 -12.8611 -6.9573 23 6 1.0477 -13.2668 -5.7382 24 8 0.9279 -12.1915 -4.9439 25 8 1.5832 -8.5906 -5.7933 26 7 1.4767 -7.6043 -5.1026 27 6 0.5005 -3.3056 -2.4270 28 1 1.3492 -2.9483 -3.0103 29 8 -0.6542 -3.3874 -3.2648 30 6 0.2277 -2.3350 -1.2737 31 1 -0.4851 0.8400 -0.0004 32 1 2.7398 -3.5171 0.7492 33 1 1.0478 -4.0672 0.8325 34 1 2.3136 -5.6013 -0.6020 35 1 2.9078 -4.2404 -1.5845 36 1 1.3436 -5.3012 -3.8232 37 1 0.5963 -9.9197 -3.0220 38 1 1.9101 -10.8132 -7.7070 39 1 1.6473 -13.4916 -7.8136 40 1 0.8480 -14.2880 -5.4491 41 1 -0.9137 -2.5440 -3.6604 42 1 0.0986 -1.3268 -1.6674 43 1 -0.6759 -2.6397 -0.7456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090471631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:47 Heat of formation + Delta-G solvation = 2.880512 kcal Electronic energy + Delta-G solvation = -29595.527886 eV Core-core repulsion = 25225.139825 eV Total energy + Delta-G solvation = -4370.388061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.32116 -43.55154 -41.24514 -39.50816 -36.94263 -36.02401 -35.37256 -34.51342 -34.04279 -33.58782 -31.32622 -30.57551 -29.82936 -27.48700 -25.88436 -24.58847 -24.16834 -23.59642 -22.86458 -22.37794 -21.47603 -20.93100 -19.87448 -19.13676 -18.90221 -18.20019 -18.05984 -17.76771 -17.35795 -17.06241 -16.72454 -16.17493 -16.10060 -15.69929 -15.56269 -15.20675 -15.07888 -14.99935 -14.48534 -13.92373 -13.88913 -13.72120 -13.63969 -13.48555 -13.40759 -13.10775 -12.96382 -12.68690 -12.58743 -12.16883 -12.04120 -11.92350 -11.79207 -11.72107 -11.70404 -11.30366 -11.00732 -10.88365 -10.62881 -10.28119 -9.24644 -8.79513 -7.92528 -5.39582 -0.52418 0.04948 0.90749 1.13352 1.47773 1.49252 1.58272 1.65964 1.71982 1.90291 2.48248 2.60103 2.63125 3.04058 3.16550 3.26441 3.58346 3.61561 3.79468 3.93314 3.94232 3.98160 4.00899 4.21839 4.25328 4.35305 4.39694 4.59436 4.61480 4.76469 4.79669 4.86392 4.95433 5.00678 5.00926 5.11736 5.23503 5.28682 5.47889 5.53083 5.62468 5.96096 6.17866 6.31490 6.69157 6.76670 6.86004 7.07839 7.75203 8.28143 9.14344 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.033104 B = 0.001916 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.623147 B =14608.818103 C =14807.131116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.125 4.125 12 C 0.168 3.832 13 H 0.066 0.934 14 N -0.688 5.688 15 C 0.596 3.404 16 O -0.553 6.553 17 C -0.028 4.028 18 C -0.166 4.166 19 C 0.054 3.946 20 C 0.001 3.999 21 C -0.145 4.145 22 C -0.224 4.224 23 C 0.000 4.000 24 O -0.176 6.176 25 O 0.155 5.845 26 N -0.329 5.329 27 C 0.091 3.909 28 H 0.065 0.935 29 O -0.575 6.575 30 C 0.158 3.842 31 H 0.252 0.748 32 H 0.070 0.930 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.252 0.748 41 H 0.393 0.607 42 H 0.073 0.927 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -25.721 -17.069 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.165 4.165 12 C 0.064 3.936 13 H 0.085 0.915 14 N -0.338 5.338 15 C 0.381 3.619 16 O -0.430 6.430 17 C -0.185 4.185 18 C -0.189 4.189 19 C -0.009 4.009 20 C -0.049 4.049 21 C -0.164 4.164 22 C -0.243 4.243 23 C -0.068 4.068 24 O -0.072 6.072 25 O 0.074 5.926 26 N -0.027 5.027 27 C 0.030 3.970 28 H 0.083 0.917 29 O -0.382 6.382 30 C 0.031 3.969 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.211 0.789 38 H 0.192 0.808 39 H 0.202 0.798 40 H 0.268 0.732 41 H 0.243 0.757 42 H 0.091 0.909 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 3.764 -25.229 -16.318 30.281 hybrid contribution -0.128 1.362 0.253 1.391 sum 3.637 -23.867 -16.065 28.999 Atomic orbital electron populations 1.70182 1.06686 1.26119 1.55003 1.25836 0.96044 1.01615 1.00872 0.85226 0.78033 0.79245 0.77679 1.20876 1.22388 1.19344 1.19554 0.93230 0.85547 1.41180 0.90895 1.44254 1.35627 1.02463 1.50521 1.21037 0.98185 0.85480 0.93652 1.22247 0.96578 1.00078 0.97573 1.20861 0.98270 0.87016 0.87455 0.91537 1.45805 1.66674 1.05238 1.16055 1.17062 0.77383 0.81930 0.85567 1.90788 1.47826 1.78314 1.26060 1.23160 1.06969 0.95264 0.93079 1.22817 1.05043 0.92381 0.98619 1.20628 1.02798 0.87146 0.90343 1.18001 1.12456 0.82687 0.91739 1.22401 1.01126 0.97306 0.95613 1.22222 1.07251 0.94501 1.00282 1.25314 1.00563 0.91446 0.89492 1.84071 1.68113 1.14398 1.40659 1.84898 1.62331 1.09810 1.35563 1.74173 1.16453 1.07829 1.04221 1.22586 0.88003 0.94279 0.92148 0.91697 1.86395 1.47720 1.38145 1.65901 1.21212 0.88525 0.98012 0.89178 0.93889 0.91196 0.96805 0.90683 0.90726 0.75085 0.78858 0.80792 0.79802 0.73196 0.75710 0.90916 0.98286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.94 11.19 21.65 0.24 -53.69 16 2 C -0.05 -2.60 4.91 84.86 0.42 -2.19 16 3 Si 0.97 43.57 29.59 68.60 2.03 45.60 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.27 -14.16 9.59 84.03 0.81 -13.35 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 9 N -0.60 -29.82 2.99 -699.10 -2.09 -31.91 16 10 C 0.14 6.01 6.52 86.36 0.56 6.57 16 11 C -0.12 -4.45 5.65 30.67 0.17 -4.28 16 12 C 0.17 6.19 2.12 45.02 0.10 6.28 16 13 H 0.07 2.82 7.57 -2.39 -0.02 2.80 16 14 N -0.69 -22.07 4.92 -444.81 -2.19 -24.25 16 15 C 0.60 19.86 7.81 86.94 0.68 20.54 16 16 O -0.55 -21.62 16.61 -3.68 -0.06 -21.68 16 17 C -0.03 -0.78 7.17 42.80 0.31 -0.47 16 18 C -0.17 -3.92 10.96 22.87 0.25 -3.67 16 19 C 0.05 1.09 7.30 24.32 0.18 1.27 16 20 C 0.00 0.02 7.17 24.13 0.17 0.19 16 21 C -0.14 -1.69 10.86 22.43 0.24 -1.44 16 22 C -0.22 -1.62 10.88 22.10 0.24 -1.38 16 23 C 0.00 0.00 12.08 67.05 0.81 0.81 16 24 O -0.18 -2.62 10.67 -6.52 -0.07 -2.69 16 25 O 0.15 3.30 11.21 66.39 0.74 4.04 16 26 N -0.33 -8.37 11.81 -48.86 -0.58 -8.95 16 27 C 0.09 3.42 3.14 30.67 0.10 3.52 16 28 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 29 O -0.57 -19.81 13.16 -148.98 -1.96 -21.77 16 30 C 0.16 7.47 4.94 86.36 0.43 7.89 16 31 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 2.55 8.14 -2.38 -0.02 2.54 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 11.83 8.36 -92.70 -0.77 11.05 16 37 H 0.19 4.14 8.06 -2.91 -0.02 4.11 16 38 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 40 H 0.25 -0.55 8.06 -2.91 -0.02 -0.58 16 41 H 0.39 10.73 9.08 -74.05 -0.67 10.06 16 42 H 0.07 3.76 6.04 -2.39 -0.01 3.75 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: -1.00 -70.96 372.68 1.16 -69.80 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.36 Total: 25.22 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.46 Total: 20.29 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -4.61 Total: -118.81 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.35 Total: -42.10 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.96 1.16 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090471631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.679 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds