Wall clock time and date at job start Wed Apr 1 2020 04:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47113 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46771 * 120.00029 * 3 2 1 7 7 C 1.38819 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00029 * 197.35455 * 7 2 1 9 9 N 1.36943 * 119.99914 * 17.36461 * 7 2 1 10 10 C 1.46922 * 120.62700 * 207.66541 * 9 7 2 11 11 C 1.53192 * 108.77537 * 233.62717 * 10 9 7 12 12 C 1.53043 * 109.31429 * 305.36756 * 11 10 9 13 13 H 1.09001 * 109.45262 * 181.37461 * 12 11 10 14 14 N 1.46496 * 109.45741 * 301.34623 * 12 11 10 15 15 C 1.34776 * 119.99994 * 275.06342 * 14 12 11 16 16 O 1.21502 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.48341 * 120.00602 * 179.72493 * 15 14 12 18 18 C 1.41714 * 126.81528 * 180.02562 * 17 15 14 19 19 C 1.37161 * 103.79583 * 179.97438 * 18 17 15 20 20 C 1.47013 * 126.85685 * 179.97438 * 19 18 17 21 21 C 1.36346 * 125.96025 * 179.71800 * 20 19 18 22 22 C 1.40703 * 106.71316 * 179.88658 * 21 20 19 23 23 C 1.34894 * 107.08548 * 0.37127 * 22 21 20 24 24 O 1.34229 * 108.72954 * 359.77022 * 23 22 21 25 25 O 1.34581 * 106.28321 * 0.02562 * 19 18 17 26 26 N 1.20876 * 111.68826 * 359.73000 * 25 19 18 27 27 C 1.53048 * 109.53686 * 61.36103 * 12 11 10 28 28 H 1.08999 * 109.49213 * 58.62134 * 27 12 11 29 29 O 1.42898 * 109.49559 * 178.68664 * 27 12 11 30 30 C 1.46927 * 120.62982 * 27.68662 * 9 7 2 31 31 H 0.97002 * 119.99356 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58817 * 353.41462 * 10 9 7 33 33 H 1.08997 * 109.58749 * 113.84553 * 10 9 7 34 34 H 1.08995 * 109.50177 * 185.41482 * 11 10 9 35 35 H 1.09007 * 109.49500 * 65.31620 * 11 10 9 36 36 H 0.97005 * 120.00387 * 95.06699 * 14 12 11 37 37 H 1.08001 * 128.10371 * 0.02562 * 18 17 15 38 38 H 1.07993 * 126.64082 * 359.97438 * 21 20 19 39 39 H 1.07999 * 126.45926 * 180.14115 * 22 21 20 40 40 H 1.07998 * 125.63290 * 179.78214 * 23 22 21 41 41 H 0.96698 * 113.99803 * 180.02562 * 29 27 12 42 42 H 1.08997 * 109.58955 * 6.58116 * 30 9 7 43 43 H 1.09003 * 109.69637 * 246.23026 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2784 9 7 1.3722 -2.3610 -0.3550 10 6 1.8193 -3.6549 0.1783 11 6 2.0749 -4.6091 -0.9926 12 6 0.8195 -4.6884 -1.8643 13 1 0.9905 -5.3855 -2.6845 14 7 -0.3084 -5.1551 -1.0541 15 6 -0.5065 -6.4758 -0.8722 16 8 0.2506 -7.2792 -1.3796 17 6 -1.6449 -6.9483 -0.0468 18 6 -1.9861 -8.2939 0.2385 19 6 -3.1013 -8.1878 1.0298 20 6 -3.8754 -9.2920 1.6153 21 6 -4.9797 -9.1652 2.4049 22 6 -5.3937 -10.4690 2.7340 23 6 -4.5291 -11.3201 2.1444 24 8 -3.6139 -10.6063 1.4700 25 8 -3.3461 -6.8711 1.1623 26 7 -2.5326 -6.2034 0.5678 27 6 0.5013 -3.3027 -2.4308 28 1 1.3498 -2.9445 -3.0138 29 8 -0.6532 -3.3837 -3.2690 30 6 0.2279 -2.3338 -1.2762 31 1 -0.4849 0.8401 0.0004 32 1 2.7399 -3.5179 0.7456 33 1 1.0469 -4.0699 0.8257 34 1 2.3143 -5.6006 -0.6085 35 1 2.9088 -4.2382 -1.5887 36 1 -0.9126 -4.5137 -0.6487 37 1 -1.4848 -9.1925 -0.0897 38 1 -5.4469 -8.2427 2.7162 39 1 -6.2416 -10.7377 3.3466 40 1 -4.5670 -12.3977 2.2048 41 1 -0.9128 -2.5399 -3.6634 42 1 0.0984 -1.3252 -1.6685 43 1 -0.6757 -2.6395 -0.7487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090471632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:51 Heat of formation + Delta-G solvation = 29.432091 kcal Electronic energy + Delta-G solvation = -30220.366082 eV Core-core repulsion = 25851.129385 eV Total energy + Delta-G solvation = -4369.236698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.23333 -42.95164 -39.88535 -37.91584 -35.32549 -34.25823 -34.21996 -33.71198 -32.95886 -31.90003 -29.73189 -29.11277 -28.90136 -25.70569 -24.71939 -23.66525 -22.62758 -22.21461 -21.79402 -21.70606 -20.29377 -19.03619 -18.78842 -18.05558 -17.15327 -16.97271 -16.80473 -16.56432 -16.41335 -15.45554 -15.28233 -14.95791 -14.78714 -14.28216 -14.09157 -13.83012 -13.73610 -13.42765 -13.36122 -13.18249 -12.85182 -12.74180 -12.33242 -11.91121 -11.84434 -11.72736 -11.12691 -11.06159 -10.85726 -10.83524 -10.64488 -10.48269 -10.29635 -10.25937 -10.12948 -10.02354 -9.63950 -9.37967 -8.80970 -8.57382 -8.54258 -6.81036 -5.90289 -3.33923 0.35361 1.21871 1.70460 1.79264 2.37780 3.04953 3.24877 3.32166 3.34458 3.38476 3.39400 3.82694 4.12342 4.38693 4.49872 4.53934 4.55672 4.69426 4.96155 5.09234 5.23012 5.35102 5.36892 5.39786 5.42050 5.53395 5.61322 5.64792 5.77938 5.88707 5.97049 5.98858 6.17843 6.35118 6.38583 6.53905 6.65975 6.72890 6.85207 7.02632 7.38853 7.57759 7.69164 7.84818 8.06444 8.26384 8.32450 9.07417 9.70275 10.26022 11.17870 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.002393 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.154887 B =11699.527230 C =12375.370581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.144 3.856 11 C -0.145 4.145 12 C 0.164 3.836 13 H 0.083 0.917 14 N -0.684 5.684 15 C 0.596 3.404 16 O -0.532 6.532 17 C -0.015 4.015 18 C -0.150 4.150 19 C 0.028 3.972 20 C 0.046 3.954 21 C -0.158 4.158 22 C -0.214 4.214 23 C -0.017 4.017 24 O -0.159 6.159 25 O 0.146 5.854 26 N -0.313 5.313 27 C 0.066 3.934 28 H 0.066 0.934 29 O -0.573 6.573 30 C 0.145 3.855 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.187 0.813 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.213 0.787 41 H 0.377 0.623 42 H 0.094 0.906 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -19.237 1.982 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.018 3.982 11 C -0.185 4.185 12 C 0.060 3.940 13 H 0.101 0.899 14 N -0.336 5.336 15 C 0.379 3.621 16 O -0.408 6.408 17 C -0.172 4.172 18 C -0.172 4.172 19 C -0.035 4.035 20 C -0.005 4.005 21 C -0.178 4.178 22 C -0.233 4.233 23 C -0.086 4.086 24 O -0.054 6.054 25 O 0.066 5.934 26 N -0.011 5.011 27 C 0.005 3.995 28 H 0.083 0.917 29 O -0.378 6.378 30 C 0.018 3.982 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.204 0.796 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.229 0.771 41 H 0.224 0.776 42 H 0.112 0.888 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.909 -18.996 1.651 21.046 hybrid contribution 0.116 1.045 0.083 1.055 sum -8.793 -17.951 1.734 20.063 Atomic orbital electron populations 1.70015 1.05256 1.25857 1.53433 1.25071 0.95327 0.98558 1.00607 0.86336 0.78919 0.83101 0.78225 1.20958 1.21589 1.20787 1.19158 0.92850 0.84627 1.41962 0.91392 1.43956 1.35642 1.01727 1.49794 1.20932 0.98005 0.86456 0.92846 1.22427 0.96339 1.00474 0.99305 1.20955 0.85479 0.94875 0.92705 0.89883 1.45902 1.30576 1.05952 1.51135 1.16782 0.82254 0.83219 0.79851 1.90772 1.45785 1.54506 1.49722 1.23453 0.99139 0.91635 1.03020 1.22708 0.96403 0.98160 0.99881 1.20470 0.96854 0.84195 1.02008 1.18050 0.97664 0.80614 1.04185 1.22027 0.96310 0.99680 0.99807 1.21833 1.03263 0.92255 1.05900 1.24346 0.89633 0.97924 0.96651 1.84064 1.47043 1.15584 1.58713 1.84970 1.41330 1.13534 1.53550 1.74275 1.01002 1.18121 1.07653 1.22944 0.87936 0.95500 0.93071 0.91658 1.86410 1.48206 1.36757 1.66393 1.21409 0.89538 0.98715 0.88563 0.93413 0.92274 0.96288 0.91575 0.90726 0.75074 0.79572 0.82112 0.82518 0.77096 0.77586 0.88773 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.19 55.49 0.62 -24.49 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.76 9.59 -15.05 -0.14 -6.91 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.03 2.99 -172.33 -0.52 -14.54 16 10 C 0.14 2.98 6.26 -3.71 -0.02 2.96 16 11 C -0.15 -2.61 5.77 -26.61 -0.15 -2.76 16 12 C 0.16 2.99 2.47 -67.89 -0.17 2.82 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 14 N -0.68 -12.40 4.15 -54.55 -0.23 -12.63 16 15 C 0.60 10.61 7.81 -12.10 -0.09 10.52 16 16 O -0.53 -10.32 16.61 5.36 0.09 -10.23 16 17 C -0.01 -0.23 7.17 -82.66 -0.59 -0.82 16 18 C -0.15 -1.95 10.96 -38.65 -0.42 -2.38 16 19 C 0.03 0.33 7.30 -36.42 -0.27 0.07 16 20 C 0.05 0.46 7.17 -36.71 -0.26 0.20 16 21 C -0.16 -1.32 10.86 -39.33 -0.43 -1.75 16 22 C -0.21 -1.36 10.88 -39.84 -0.43 -1.79 16 23 C -0.02 -0.10 12.08 29.55 0.36 0.25 16 24 O -0.16 -1.47 10.67 4.56 0.05 -1.42 16 25 O 0.15 1.94 11.21 15.72 0.18 2.12 16 26 N -0.31 -4.87 11.81 33.36 0.39 -4.48 16 27 C 0.07 1.24 3.36 -26.61 -0.09 1.15 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 O -0.57 -9.93 13.21 -35.23 -0.47 -10.40 16 30 C 0.14 3.23 4.64 -3.71 -0.02 3.21 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 33 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.41 7.79 6.62 -40.82 -0.27 7.52 16 37 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.21 0.39 8.06 -52.49 -0.42 -0.04 16 41 H 0.38 5.22 9.08 45.56 0.41 5.63 16 42 H 0.09 2.33 6.03 -51.93 -0.31 2.02 16 43 H 0.03 0.60 6.65 -51.93 -0.35 0.25 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -31.78 368.46 -6.41 -38.19 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.23 Total: 11.58 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.82 Total: 4.77 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.27 Total: -56.15 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.15 Total: -19.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.78 -6.41 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090471632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.624 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds