Wall clock time and date at job start Wed Apr 1 2020 04:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00412 * 2 1 4 4 H 1.48497 * 109.47113 * 240.00014 * 3 2 1 5 5 H 1.48498 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46771 * 120.00029 * 3 2 1 7 7 C 1.38819 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00029 * 197.35455 * 7 2 1 9 9 N 1.36943 * 119.99914 * 17.36461 * 7 2 1 10 10 C 1.46922 * 120.62700 * 207.66541 * 9 7 2 11 11 C 1.53192 * 108.77537 * 233.62717 * 10 9 7 12 12 C 1.53043 * 109.31429 * 305.36756 * 11 10 9 13 13 H 1.09001 * 109.45262 * 181.37461 * 12 11 10 14 14 N 1.46496 * 109.45741 * 301.34623 * 12 11 10 15 15 C 1.34776 * 119.99994 * 275.06342 * 14 12 11 16 16 O 1.21502 * 119.99891 * 0.02562 * 15 14 12 17 17 C 1.48341 * 120.00602 * 179.72493 * 15 14 12 18 18 C 1.41714 * 126.81528 * 180.02562 * 17 15 14 19 19 C 1.37161 * 103.79583 * 179.97438 * 18 17 15 20 20 C 1.47013 * 126.85685 * 179.97438 * 19 18 17 21 21 C 1.36346 * 125.96025 * 179.71800 * 20 19 18 22 22 C 1.40703 * 106.71316 * 179.88658 * 21 20 19 23 23 C 1.34894 * 107.08548 * 0.37127 * 22 21 20 24 24 O 1.34229 * 108.72954 * 359.77022 * 23 22 21 25 25 O 1.34581 * 106.28321 * 0.02562 * 19 18 17 26 26 N 1.20876 * 111.68826 * 359.73000 * 25 19 18 27 27 C 1.53048 * 109.53686 * 61.36103 * 12 11 10 28 28 H 1.08999 * 109.49213 * 58.62134 * 27 12 11 29 29 O 1.42898 * 109.49559 * 178.68664 * 27 12 11 30 30 C 1.46927 * 120.62982 * 27.68662 * 9 7 2 31 31 H 0.97002 * 119.99356 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58817 * 353.41462 * 10 9 7 33 33 H 1.08997 * 109.58749 * 113.84553 * 10 9 7 34 34 H 1.08995 * 109.50177 * 185.41482 * 11 10 9 35 35 H 1.09007 * 109.49500 * 65.31620 * 11 10 9 36 36 H 0.97005 * 120.00387 * 95.06699 * 14 12 11 37 37 H 1.08001 * 128.10371 * 0.02562 * 18 17 15 38 38 H 1.07993 * 126.64082 * 359.97438 * 21 20 19 39 39 H 1.07999 * 126.45926 * 180.14115 * 22 21 20 40 40 H 1.07998 * 125.63290 * 179.78214 * 23 22 21 41 41 H 0.96698 * 113.99803 * 180.02562 * 29 27 12 42 42 H 1.08997 * 109.58955 * 6.58116 * 30 9 7 43 43 H 1.09003 * 109.69637 * 246.23026 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0533 -1.2237 0.2784 9 7 1.3722 -2.3610 -0.3550 10 6 1.8193 -3.6549 0.1783 11 6 2.0749 -4.6091 -0.9926 12 6 0.8195 -4.6884 -1.8643 13 1 0.9905 -5.3855 -2.6845 14 7 -0.3084 -5.1551 -1.0541 15 6 -0.5065 -6.4758 -0.8722 16 8 0.2506 -7.2792 -1.3796 17 6 -1.6449 -6.9483 -0.0468 18 6 -1.9861 -8.2939 0.2385 19 6 -3.1013 -8.1878 1.0298 20 6 -3.8754 -9.2920 1.6153 21 6 -4.9797 -9.1652 2.4049 22 6 -5.3937 -10.4690 2.7340 23 6 -4.5291 -11.3201 2.1444 24 8 -3.6139 -10.6063 1.4700 25 8 -3.3461 -6.8711 1.1623 26 7 -2.5326 -6.2034 0.5678 27 6 0.5013 -3.3027 -2.4308 28 1 1.3498 -2.9445 -3.0138 29 8 -0.6532 -3.3837 -3.2690 30 6 0.2279 -2.3338 -1.2762 31 1 -0.4849 0.8401 0.0004 32 1 2.7399 -3.5179 0.7456 33 1 1.0469 -4.0699 0.8257 34 1 2.3143 -5.6006 -0.6085 35 1 2.9088 -4.2382 -1.5887 36 1 -0.9126 -4.5137 -0.6487 37 1 -1.4848 -9.1925 -0.0897 38 1 -5.4469 -8.2427 2.7162 39 1 -6.2416 -10.7377 3.3466 40 1 -4.5670 -12.3977 2.2048 41 1 -0.9128 -2.5399 -3.6634 42 1 0.0984 -1.3252 -1.6685 43 1 -0.6757 -2.6395 -0.7487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090471632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:50 Heat of formation + Delta-G solvation = 6.514264 kcal Electronic energy + Delta-G solvation = -30221.359874 eV Core-core repulsion = 25851.129385 eV Total energy + Delta-G solvation = -4370.230489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.32893 -43.55073 -41.35678 -39.45850 -36.91036 -35.84090 -35.35981 -34.50624 -33.91701 -33.48590 -31.43347 -30.56084 -29.82808 -27.44933 -26.09910 -24.58974 -24.10702 -23.58282 -23.19381 -22.38622 -21.43700 -20.36518 -19.92805 -19.15090 -18.86625 -18.22363 -18.11667 -17.65539 -17.06589 -16.96754 -16.80130 -16.26378 -16.15359 -15.75614 -15.51256 -15.33930 -15.06061 -15.03431 -14.47492 -13.93662 -13.89783 -13.72672 -13.61188 -13.47844 -13.32535 -12.97511 -12.88484 -12.74929 -12.64036 -12.24842 -12.05399 -11.87325 -11.77559 -11.72416 -11.58372 -11.27507 -10.98943 -10.88827 -10.60868 -10.24142 -9.24965 -8.75334 -7.91755 -5.38257 -0.51083 0.06841 0.92002 1.13578 1.47910 1.49367 1.56340 1.71638 1.74243 1.92384 2.48311 2.61259 2.67082 3.06754 3.19848 3.24411 3.59811 3.62039 3.81495 3.93858 3.96342 4.00689 4.07133 4.20909 4.21948 4.30688 4.40134 4.61962 4.63196 4.75854 4.80174 4.88942 4.95308 5.00388 5.01103 5.10551 5.23006 5.34851 5.47504 5.54488 5.62808 5.95748 6.18992 6.31974 6.70373 6.78127 6.86882 7.08990 7.76533 8.28884 9.14076 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.002393 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.154887 B =11699.527230 C =12375.370581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.601 5.601 10 C 0.144 3.856 11 C -0.132 4.132 12 C 0.165 3.835 13 H 0.087 0.913 14 N -0.687 5.687 15 C 0.597 3.403 16 O -0.550 6.550 17 C -0.033 4.033 18 C -0.161 4.161 19 C 0.049 3.951 20 C 0.003 3.997 21 C -0.148 4.148 22 C -0.224 4.224 23 C 0.002 3.998 24 O -0.174 6.174 25 O 0.153 5.847 26 N -0.338 5.338 27 C 0.083 3.917 28 H 0.073 0.927 29 O -0.575 6.575 30 C 0.157 3.843 31 H 0.252 0.748 32 H 0.061 0.939 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.407 0.593 37 H 0.200 0.800 38 H 0.171 0.829 39 H 0.185 0.815 40 H 0.255 0.745 41 H 0.393 0.607 42 H 0.068 0.932 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -21.174 2.327 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.171 4.171 12 C 0.060 3.940 13 H 0.105 0.895 14 N -0.337 5.337 15 C 0.382 3.618 16 O -0.428 6.428 17 C -0.189 4.189 18 C -0.183 4.183 19 C -0.014 4.014 20 C -0.047 4.047 21 C -0.168 4.168 22 C -0.243 4.243 23 C -0.066 4.066 24 O -0.070 6.070 25 O 0.072 5.928 26 N -0.035 5.035 27 C 0.022 3.978 28 H 0.091 0.909 29 O -0.382 6.382 30 C 0.030 3.970 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.243 0.757 37 H 0.217 0.783 38 H 0.188 0.812 39 H 0.202 0.798 40 H 0.271 0.729 41 H 0.242 0.758 42 H 0.086 0.914 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -9.318 -20.934 1.980 22.999 hybrid contribution 0.083 1.480 0.099 1.485 sum -9.236 -19.454 2.079 21.635 Atomic orbital electron populations 1.70164 1.06545 1.26105 1.54837 1.25785 0.96035 1.01441 1.00907 0.85341 0.77558 0.79164 0.78349 1.20193 1.22145 1.20393 1.19474 0.93144 0.85675 1.41325 0.91208 1.44176 1.35746 1.02212 1.50479 1.20987 0.97542 0.85726 0.93860 1.22281 0.96609 1.00081 0.98172 1.20956 0.85642 0.94474 0.92890 0.89466 1.45919 1.30486 1.06140 1.51176 1.16983 0.82500 0.82772 0.79577 1.90744 1.46658 1.54758 1.50605 1.23300 0.99069 0.92844 1.03712 1.22818 0.97183 0.97480 1.00815 1.20735 0.96156 0.84026 1.00513 1.17961 0.99118 0.80747 1.06848 1.22397 0.95119 1.01269 0.98007 1.22214 1.04359 0.91164 1.06519 1.25334 0.87777 0.99547 0.93974 1.84067 1.48180 1.15250 1.59489 1.84919 1.40658 1.14291 1.52968 1.74260 1.01671 1.18943 1.08614 1.22623 0.88527 0.94771 0.91837 0.90894 1.86393 1.47725 1.38093 1.65964 1.21198 0.88415 0.98140 0.89247 0.93938 0.92035 0.97412 0.90585 0.89548 0.75660 0.78305 0.81180 0.79789 0.72938 0.75785 0.91362 0.97916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 11.19 21.65 0.24 -52.79 16 2 C -0.05 -2.46 4.91 84.86 0.42 -2.05 16 3 Si 0.97 43.47 29.59 68.60 2.03 45.50 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.27 -14.11 9.59 84.03 0.81 -13.31 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 N -0.60 -29.08 2.99 -699.11 -2.09 -31.17 16 10 C 0.14 6.01 6.26 86.36 0.54 6.55 16 11 C -0.13 -4.62 5.77 30.67 0.18 -4.44 16 12 C 0.16 5.93 2.47 45.02 0.11 6.04 16 13 H 0.09 3.13 7.58 -2.39 -0.02 3.11 16 14 N -0.69 -25.27 4.15 -444.79 -1.85 -27.12 16 15 C 0.60 21.57 7.81 86.93 0.68 22.25 16 16 O -0.55 -21.36 16.61 -3.72 -0.06 -21.42 16 17 C -0.03 -1.05 7.17 42.79 0.31 -0.75 16 18 C -0.16 -4.24 10.96 22.88 0.25 -3.99 16 19 C 0.05 1.17 7.30 24.32 0.18 1.35 16 20 C 0.00 0.06 7.17 24.13 0.17 0.24 16 21 C -0.15 -2.19 10.86 22.43 0.24 -1.95 16 22 C -0.22 -2.13 10.88 22.10 0.24 -1.89 16 23 C 0.00 0.01 12.08 67.05 0.81 0.82 16 24 O -0.17 -2.89 10.67 -6.61 -0.07 -2.96 16 25 O 0.15 4.11 11.21 66.44 0.74 4.86 16 26 N -0.34 -10.84 11.81 -48.86 -0.58 -11.42 16 27 C 0.08 3.10 3.36 30.67 0.10 3.20 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 O -0.57 -19.66 13.21 -148.98 -1.97 -21.63 16 30 C 0.16 7.15 4.64 86.36 0.40 7.55 16 31 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 33 H 0.01 0.35 7.74 -2.39 -0.02 0.33 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 36 H 0.41 15.93 6.62 -92.70 -0.61 15.32 16 37 H 0.20 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.25 -0.29 8.06 -2.91 -0.02 -0.31 16 41 H 0.39 10.66 9.08 -74.06 -0.67 9.99 16 42 H 0.07 3.47 6.03 -2.39 -0.01 3.46 16 43 H 0.00 0.14 6.65 -2.39 -0.02 0.13 16 Total: -1.00 -69.22 368.46 1.64 -67.58 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.20 Total: 30.94 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.44 Total: 19.63 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -4.27 Total: -122.50 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.36 Total: -41.16 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.22 1.64 -67.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090471632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.099 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds