Wall clock time and date at job start Wed Apr 1 2020 04:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.46560 * 2 1 4 4 N 1.33689 * 126.27382 * 270.18557 * 3 2 1 5 5 C 1.30613 * 108.99364 * 180.27169 * 4 3 2 6 6 O 1.33656 * 109.15732 * 359.73383 * 5 4 3 7 7 C 1.35345 * 107.68399 * 359.97438 * 6 5 4 8 8 C 1.46728 * 126.64562 * 180.02562 * 7 6 5 9 9 O 1.21682 * 119.99986 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99871 * 0.02562 * 8 7 6 11 11 C 1.48148 * 127.83745 * 179.97438 * 10 8 7 12 12 C 1.54391 * 104.61906 * 219.60607 * 11 10 8 13 13 H 1.09003 * 110.33330 * 95.00699 * 12 11 10 14 14 C 1.52994 * 110.34288 * 217.26491 * 12 11 10 15 15 F 1.39899 * 109.46857 * 175.54227 * 14 12 11 16 16 F 1.39901 * 109.47152 * 295.53769 * 14 12 11 17 17 F 1.39900 * 109.47366 * 55.54222 * 14 12 11 18 18 C 1.54287 * 104.96021 * 336.14106 * 12 11 10 19 19 H 1.09004 * 110.42536 * 241.08274 * 18 12 11 20 20 N 1.46496 * 110.34170 * 118.86820 * 18 12 11 21 21 C 1.36945 * 119.99718 * 158.00617 * 20 18 12 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.48146 * 127.83963 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.47380 * 60.00259 * 1 2 3 31 31 H 1.09007 * 109.46841 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47395 * 299.99830 * 1 2 3 33 33 H 1.09000 * 109.47395 * 240.00170 * 2 1 3 34 34 H 1.08992 * 109.47062 * 119.99638 * 2 1 3 35 35 H 1.08006 * 125.42156 * 179.74989 * 5 4 3 36 36 H 1.08998 * 110.40560 * 338.39727 * 11 10 8 37 37 H 1.09008 * 110.40394 * 100.70741 * 11 10 8 38 38 H 0.96996 * 120.00499 * 338.00347 * 20 18 12 39 39 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 40 40 H 1.09000 * 110.40839 * 21.60912 * 29 10 8 41 41 H 1.08994 * 110.50988 * 259.22626 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2925 2.1678 -1.0778 5 6 2.7149 3.3414 -0.6898 6 8 2.7317 3.3819 0.6460 7 6 2.3006 2.1816 1.0992 8 6 2.1563 1.7755 2.5017 9 8 1.7556 0.6591 2.7737 10 7 2.4675 2.6388 3.4887 11 6 2.3879 2.4145 4.9509 12 6 1.8553 3.7467 5.5211 13 1 0.7726 3.7021 5.6397 14 6 2.5259 4.0579 6.8606 15 9 2.1071 5.3145 7.3109 16 9 2.1685 3.0835 7.7986 17 9 3.9153 4.0604 6.6971 18 6 2.2363 4.8104 4.4705 19 1 2.9008 5.5558 4.9075 20 7 1.0328 5.4526 3.9364 21 6 1.1173 6.6903 3.3563 22 1 2.0711 7.1929 3.2930 23 6 -0.0228 7.2986 2.8498 24 7 -1.1853 6.6862 2.9274 25 14 0.0923 8.9871 2.0591 26 1 -1.2549 9.4122 1.6012 27 1 0.6096 9.9638 3.0508 28 1 1.0137 8.9273 0.8962 29 6 2.9666 4.0275 3.3576 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.0041 4.1503 -1.3443 36 1 1.6963 1.6021 5.1737 37 1 3.3757 2.1936 5.3558 38 1 0.1762 5.0013 3.9936 39 1 -1.9822 7.1115 2.5738 40 1 2.7115 4.4322 2.3781 41 1 4.0448 4.0620 3.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099305574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:37 Heat of formation + Delta-G solvation = -164.565735 kcal Electronic energy + Delta-G solvation = -32214.325641 eV Core-core repulsion = 27294.819826 eV Total energy + Delta-G solvation = -4919.505815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.12902 -48.59791 -48.58363 -44.48197 -41.07791 -39.10699 -36.74486 -35.82598 -34.02943 -33.61132 -32.35387 -30.70389 -29.21870 -27.33383 -26.12383 -25.23765 -24.54654 -23.62150 -22.37633 -21.71212 -21.05238 -19.67735 -19.50192 -19.27929 -18.62059 -18.15893 -17.92612 -17.70972 -17.05647 -16.67648 -16.28993 -15.97800 -15.65557 -15.47777 -15.34789 -15.18656 -15.15405 -15.00826 -14.84655 -14.74401 -14.64142 -14.56429 -14.38225 -13.74292 -13.66147 -13.37095 -13.08465 -12.88162 -12.66214 -12.61317 -12.47674 -12.29709 -12.20156 -12.13546 -12.08091 -11.89607 -11.78118 -11.28426 -11.06009 -10.24538 -9.86157 -9.07390 -7.95815 -5.26952 -0.25048 1.26577 1.39791 1.49865 1.51823 1.57543 1.65309 1.91470 1.95938 2.53058 2.74152 2.78974 2.95911 3.08780 3.35520 3.40355 3.61890 3.63565 3.71801 3.84682 3.96541 4.17394 4.22151 4.32096 4.38389 4.43390 4.48657 4.49464 4.67423 4.70036 4.73706 4.92655 4.95764 5.09971 5.13349 5.23350 5.32979 5.52712 6.15961 6.22054 6.48747 6.77768 7.30826 7.96747 8.21533 9.26474 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.007542 B = 0.005408 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.595304 B = 5175.817727 C = 7852.171285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C 0.076 3.924 4 N -0.517 5.517 5 C 0.217 3.783 6 O -0.188 6.188 7 C -0.131 4.131 8 C 0.627 3.373 9 O -0.540 6.540 10 N -0.605 5.605 11 C 0.122 3.878 12 C -0.158 4.158 13 H 0.121 0.879 14 C 0.475 3.525 15 F -0.185 7.185 16 F -0.179 7.179 17 F -0.175 7.175 18 C 0.175 3.825 19 H 0.083 0.917 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.085 0.915 23 C -0.065 4.065 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.303 1.303 27 H -0.279 1.279 28 H -0.272 1.272 29 C 0.077 3.923 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.300 0.700 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.373 0.627 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -9.450 -0.436 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.048 4.048 4 N -0.246 5.246 5 C -0.007 4.007 6 O -0.074 6.074 7 C -0.186 4.186 8 C 0.416 3.584 9 O -0.420 6.420 10 N -0.336 5.336 11 C 0.000 4.000 12 C -0.179 4.179 13 H 0.139 0.861 14 C 0.420 3.580 15 F -0.166 7.166 16 F -0.161 7.161 17 F -0.157 7.157 18 C 0.064 3.936 19 H 0.101 0.899 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.103 0.897 23 C -0.258 4.258 24 N -0.616 5.616 25 Si 0.796 3.204 26 H -0.230 1.230 27 H -0.205 1.205 28 H -0.198 1.198 29 C -0.049 4.049 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.315 0.685 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.766 -10.028 -0.978 14.745 hybrid contribution -0.581 1.469 0.435 1.638 sum 10.185 -8.560 -0.543 13.315 Atomic orbital electron populations 1.21598 0.93594 1.03164 1.00892 1.20184 0.96747 0.87015 1.04605 1.22367 0.97142 0.98878 0.86422 1.70358 1.18657 1.04297 1.31252 1.29471 0.94103 0.97692 0.79467 1.84651 1.64286 1.33359 1.25088 1.22668 1.14100 0.86027 0.95779 1.15972 0.77376 0.83681 0.81339 1.90808 1.48755 1.20203 1.82220 1.48631 1.63795 1.15072 1.06092 1.22314 1.03651 0.95120 0.78914 1.23705 1.03597 0.99159 0.91437 0.86075 1.19991 0.76974 0.74132 0.86906 1.93220 1.90025 1.42738 1.90615 1.93192 1.91665 1.62890 1.68319 1.93175 1.30709 1.96180 1.95594 1.21210 0.89825 0.91941 0.90640 0.89917 1.42524 1.04941 1.18598 1.69909 1.19528 0.94329 0.93906 1.29387 0.89700 1.25487 0.95283 1.02079 1.02960 1.69811 0.98860 1.40028 1.52887 0.85314 0.76023 0.80300 0.78734 1.22993 1.20467 1.19819 1.23661 0.99082 0.79539 1.02567 0.92914 0.89467 0.94707 0.88411 0.88946 0.68549 0.87980 0.87354 0.79403 0.94159 0.89420 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.89 71.98 0.71 -2.71 16 2 C -0.05 -1.24 5.92 29.85 0.18 -1.06 16 3 C 0.08 2.31 6.41 41.83 0.27 2.57 16 4 N -0.52 -14.63 11.26 -303.13 -3.41 -18.04 16 5 C 0.22 5.17 13.21 130.42 1.72 6.89 16 6 O -0.19 -5.64 8.01 -7.02 -0.06 -5.69 16 7 C -0.13 -4.26 7.01 24.05 0.17 -4.09 16 8 C 0.63 21.10 7.89 86.46 0.68 21.78 16 9 O -0.54 -19.21 15.06 -4.29 -0.06 -19.27 16 10 N -0.60 -18.41 3.32 -812.51 -2.69 -21.11 16 11 C 0.12 3.12 6.38 86.54 0.55 3.67 16 12 C -0.16 -4.46 2.84 -9.89 -0.03 -4.49 16 13 H 0.12 3.72 7.64 -2.39 -0.02 3.70 16 14 C 0.47 12.46 2.53 71.98 0.18 12.65 16 15 F -0.18 -5.73 16.93 44.97 0.76 -4.97 16 16 F -0.18 -4.45 17.17 44.97 0.77 -3.68 16 17 F -0.18 -4.23 16.05 44.97 0.72 -3.50 16 18 C 0.17 5.86 2.99 45.91 0.14 6.00 16 19 H 0.08 2.73 7.37 -2.39 -0.02 2.71 16 20 N -0.72 -32.23 5.14 -318.59 -1.64 -33.87 16 21 C -0.24 -11.94 9.97 84.03 0.84 -11.11 16 22 H 0.09 3.96 7.83 -2.91 -0.02 3.93 16 23 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 24 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 25 Si 0.97 43.17 29.55 68.60 2.03 45.20 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 C 0.08 2.32 6.43 86.55 0.56 2.87 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.50 6.48 -2.39 -0.02 2.48 16 35 H 0.30 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.10 2.56 7.88 -2.39 -0.02 2.54 16 37 H 0.11 2.26 7.22 -2.38 -0.02 2.24 16 38 H 0.37 18.66 7.50 -92.71 -0.70 17.96 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.09 3.07 5.49 -2.39 -0.01 3.05 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.57 358.31 3.55 -62.03 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.41 Total: 28.86 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 6.43 Total: 29.97 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -7.46 Total: -128.94 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.12 Total: -24.97 kcal Atomic # 9 Polarization: -14.41 SS G_CDS: 2.26 Total: -12.15 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.57 3.55 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099305574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.537 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds