Wall clock time and date at job start Wed Apr 1 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.51422 * 2 1 4 4 N 1.46501 * 109.46834 * 59.90162 * 3 2 1 5 5 C 1.34776 * 120.00026 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99639 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00250 * 179.97438 * 5 4 3 8 8 H 1.08996 * 109.75739 * 319.27435 * 7 5 4 9 9 C 1.54112 * 109.76318 * 79.99913 * 7 5 4 10 10 C 1.54916 * 105.89557 * 165.31529 * 9 7 5 11 11 S 1.83176 * 102.71085 * 334.83229 * 10 9 7 12 12 O 1.42100 * 111.27530 * 111.03419 * 11 10 9 13 13 O 1.42109 * 111.27468 * 250.21992 * 11 10 9 14 14 N 1.47984 * 109.76434 * 198.53972 * 7 5 4 15 15 C 1.53300 * 109.51252 * 239.90011 * 2 1 3 16 16 N 1.47150 * 108.38204 * 292.37875 * 15 2 1 17 17 C 1.36942 * 120.98212 * 129.19195 * 16 15 2 18 18 H 1.07998 * 119.99751 * 333.46672 * 17 16 15 19 19 C 1.38806 * 120.00091 * 153.46883 * 17 16 15 20 20 N 1.31620 * 120.00308 * 343.54952 * 19 17 16 21 21 Si 1.86808 * 119.99921 * 163.55360 * 19 17 16 22 22 H 1.48500 * 109.47286 * 59.99870 * 21 19 17 23 23 H 1.48497 * 109.46963 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46849 * 299.99584 * 21 19 17 25 25 C 1.47151 * 118.03662 * 309.46113 * 16 15 2 26 26 C 1.53296 * 108.38452 * 50.54058 * 25 16 15 27 27 O 1.42957 * 109.51448 * 120.15530 * 2 1 3 28 28 H 1.09000 * 109.46918 * 180.10451 * 1 2 3 29 29 H 1.08996 * 109.46462 * 300.09775 * 1 2 3 30 30 H 1.08997 * 109.46952 * 60.10182 * 1 2 3 31 31 H 1.08998 * 109.47377 * 179.89914 * 3 2 1 32 32 H 1.08994 * 109.46897 * 299.90067 * 3 2 1 33 33 H 0.97000 * 120.00396 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.16451 * 284.42237 * 9 7 5 35 35 H 1.08999 * 110.16769 * 46.20700 * 9 7 5 36 36 H 1.08999 * 110.76272 * 93.14022 * 10 9 7 37 37 H 1.09001 * 110.76216 * 216.53043 * 10 9 7 38 38 H 0.97004 * 127.76679 * 16.18022 * 14 7 5 39 39 H 1.08999 * 109.68268 * 172.65481 * 15 2 1 40 40 H 1.09004 * 109.67941 * 52.09812 * 15 2 1 41 41 H 0.97002 * 119.99982 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.68166 * 170.26049 * 25 16 15 43 43 H 1.09001 * 109.68224 * 290.81067 * 25 16 15 44 44 H 1.08996 * 109.50987 * 187.77183 * 26 25 16 45 45 H 1.08992 * 109.51312 * 67.62002 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5513 2.1337 1.1950 5 6 1.8771 3.4241 1.4079 6 8 2.5753 4.0128 0.6099 7 6 1.3728 4.1357 2.6368 8 1 0.3366 3.8554 2.8258 9 6 2.2442 3.7598 3.8511 10 6 1.9080 4.7967 4.9519 11 16 1.3235 6.2374 3.9835 12 8 -0.0690 6.4521 4.1681 13 8 2.2575 7.3072 4.0359 14 7 1.4679 5.5996 2.4418 15 6 2.0421 -0.7247 -1.2501 16 7 1.6960 -2.1502 -1.1346 17 6 1.0562 -2.8051 -2.1530 18 1 0.4294 -2.2548 -2.8391 19 6 1.2133 -4.1760 -2.3034 20 7 2.2034 -4.7955 -1.6965 21 14 0.0195 -5.1417 -3.3673 22 1 0.0625 -4.6211 -4.7574 23 1 0.4024 -6.5765 -3.3636 24 1 -1.3556 -4.9955 -2.8261 25 6 2.0522 -2.8498 0.1100 26 6 1.5397 -2.0217 1.2938 27 8 2.0076 -0.6769 1.1651 28 1 -0.3633 -1.0277 0.0019 29 1 -0.3632 0.5153 0.8891 30 1 -0.3633 0.5122 -0.8909 31 1 3.1311 1.4414 0.0018 32 1 1.6796 1.9556 -0.8908 33 1 0.9920 1.6632 1.8327 34 1 1.9978 2.7548 4.1936 35 1 3.3004 3.8195 3.5886 36 1 1.1190 4.4244 5.6053 37 1 2.7982 5.0527 5.5263 38 1 1.5876 6.0814 1.6085 39 1 3.1241 -0.6142 -1.3211 40 1 1.5704 -0.3031 -2.1378 41 1 2.3129 -5.7536 -1.8014 42 1 1.5872 -3.8356 0.1230 43 1 3.1353 -2.9533 0.1759 44 1 1.9114 -2.4490 2.2251 45 1 0.4498 -2.0290 1.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108402305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:52 Heat of formation + Delta-G solvation = -111.071767 kcal Electronic energy + Delta-G solvation = -29464.244980 eV Core-core repulsion = 25224.359529 eV Total energy + Delta-G solvation = -4239.885451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37611 -39.11609 -37.46815 -36.84594 -36.23775 -35.20633 -34.40117 -32.29244 -32.05235 -30.97550 -28.32566 -27.98966 -26.39446 -25.29385 -23.27306 -23.11664 -21.46308 -20.75554 -19.97687 -18.90085 -18.36360 -17.55005 -17.14074 -16.68693 -16.35697 -15.98887 -15.85552 -15.34787 -15.17239 -14.97579 -14.56653 -14.43765 -14.09291 -13.90595 -13.82192 -13.66344 -13.15099 -13.14288 -12.87646 -12.52759 -12.48736 -12.36456 -12.26927 -12.11965 -11.92676 -11.72193 -11.21634 -11.16023 -11.06676 -10.90780 -10.73996 -10.51781 -10.33978 -10.28583 -10.05488 -9.93670 -9.60606 -9.19525 -9.12633 -8.60153 -6.81392 -5.91374 -3.35509 -0.18912 2.05648 2.32617 2.90030 3.21122 3.29826 3.36327 3.36474 3.54713 3.83546 3.94497 4.09583 4.28683 4.36073 4.39810 4.65214 4.73929 4.95088 5.01686 5.19197 5.20524 5.26618 5.27234 5.34033 5.46132 5.70186 5.83333 5.94672 5.96553 6.04734 6.21389 6.30732 6.34319 6.40694 6.58153 6.66736 6.74700 7.02377 7.31160 7.43784 7.63755 7.76404 7.96343 8.26210 9.04252 9.66786 10.23416 11.16675 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002141 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.070976 B =13076.733610 C =13246.470976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 C 0.137 3.863 4 N -0.710 5.710 5 C 0.520 3.480 6 O -0.527 6.527 7 C 0.085 3.915 8 H 0.114 0.886 9 C -0.115 4.115 10 C -0.600 4.600 11 S 2.579 3.421 12 O -0.951 6.951 13 O -0.957 6.957 14 N -1.081 6.081 15 C 0.128 3.872 16 N -0.589 5.589 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.140 3.860 26 C 0.036 3.964 27 O -0.384 6.384 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.442 0.558 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 14.967 14.049 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.014 3.986 4 N -0.362 5.362 5 C 0.303 3.697 6 O -0.403 6.403 7 C -0.027 4.027 8 H 0.131 0.869 9 C -0.155 4.155 10 C -0.730 4.730 11 S 2.672 3.328 12 O -0.941 6.941 13 O -0.947 6.947 14 N -0.849 5.849 15 C 0.001 3.999 16 N -0.313 5.313 17 C -0.385 4.385 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.014 3.986 26 C -0.042 4.042 27 O -0.304 6.304 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.241 0.759 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.284 0.716 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.166 16.188 13.862 21.422 hybrid contribution -0.657 -1.609 -0.762 1.897 sum -2.822 14.580 13.100 19.803 Atomic orbital electron populations 1.22258 0.95467 1.03784 1.00901 1.22205 0.93624 0.90195 0.89380 1.21436 1.00067 0.89984 0.87148 1.45935 1.52966 1.11185 1.26135 1.19914 0.80959 0.82219 0.86637 1.90740 1.37272 1.66052 1.46247 1.22014 1.01684 0.83350 0.95671 0.86865 1.22422 1.02312 1.00769 0.90040 1.30758 1.13707 1.17961 1.10610 1.06164 0.75338 0.75613 0.75665 1.93665 1.31349 1.84285 1.84765 1.93623 1.64104 1.51781 1.85175 1.55351 1.91988 1.11787 1.25784 1.21419 0.97476 0.86935 0.94070 1.43985 1.68434 1.04427 1.14430 1.19121 1.20903 0.90729 1.07733 0.91435 1.25048 0.97213 0.97985 0.99264 1.70015 1.28840 1.09260 1.46526 0.86334 0.80834 0.79061 0.80322 1.20792 1.21563 1.20981 1.21432 0.97954 0.96192 0.83018 1.23364 0.98270 0.82413 1.00135 1.87795 1.72974 1.26757 1.42869 0.90285 0.93529 0.92020 0.90526 0.89978 0.75870 0.86614 0.88059 0.83748 0.83609 0.71564 0.95346 0.91811 0.93411 0.88825 0.95453 0.90164 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 7.92 37.16 0.29 -2.04 16 2 C 0.09 1.33 0.76 -90.46 -0.07 1.26 16 3 C 0.14 1.80 4.82 -4.04 -0.02 1.78 16 4 N -0.71 -7.37 5.15 -60.29 -0.31 -7.68 16 5 C 0.52 5.55 7.09 -10.98 -0.08 5.48 16 6 O -0.53 -7.62 16.28 5.56 0.09 -7.53 16 7 C 0.09 0.62 3.29 -67.69 -0.22 0.39 16 8 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 9 C -0.12 -0.57 6.12 -25.14 -0.15 -0.73 16 10 C -0.60 -2.30 7.49 38.17 0.29 -2.01 16 11 S 2.58 20.09 6.40 -107.50 -0.69 19.40 16 12 O -0.95 -10.37 18.14 -57.42 -1.04 -11.41 16 13 O -0.96 -11.07 18.14 -57.42 -1.04 -12.11 16 14 N -1.08 -8.96 6.62 -4.53 -0.03 -8.99 16 15 C 0.13 2.47 5.40 -3.53 -0.02 2.45 16 16 N -0.59 -13.63 2.57 -171.82 -0.44 -14.07 16 17 C -0.26 -6.55 9.64 -15.06 -0.15 -6.70 16 18 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 20 N -0.90 -24.97 11.15 55.49 0.62 -24.35 16 21 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.14 3.09 5.45 -3.53 -0.02 3.07 16 26 C 0.04 0.61 6.60 37.31 0.25 0.86 16 27 O -0.38 -6.25 9.99 -35.23 -0.35 -6.61 16 28 H 0.08 1.32 6.11 -51.93 -0.32 1.00 16 29 H 0.05 0.53 6.86 -51.93 -0.36 0.17 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.41 3.44 7.20 -40.82 -0.29 3.14 16 34 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.14 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.15 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.44 3.83 8.53 -40.75 -0.35 3.49 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 42 H 0.09 2.30 6.16 -51.93 -0.32 1.98 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -35.74 369.63 -9.21 -44.95 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.57 Total: 3.37 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.01 Total: 3.82 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.16 Total: -55.09 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -2.34 Total: -37.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 20.09 SS G_CDS: -0.69 Total: 19.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.74 -9.21 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108402305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.126 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds