Wall clock time and date at job start Wed Apr 1 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.51422 * 2 1 4 4 N 1.46501 * 109.46834 * 59.90162 * 3 2 1 5 5 C 1.34776 * 120.00026 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99639 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00250 * 179.97438 * 5 4 3 8 8 H 1.08996 * 109.75739 * 319.27435 * 7 5 4 9 9 C 1.54112 * 109.76318 * 79.99913 * 7 5 4 10 10 C 1.54916 * 105.89557 * 165.31529 * 9 7 5 11 11 S 1.83176 * 102.71085 * 334.83229 * 10 9 7 12 12 O 1.42100 * 111.27530 * 111.03419 * 11 10 9 13 13 O 1.42109 * 111.27468 * 250.21992 * 11 10 9 14 14 N 1.47984 * 109.76434 * 198.53972 * 7 5 4 15 15 C 1.53300 * 109.51252 * 239.90011 * 2 1 3 16 16 N 1.47150 * 108.38204 * 292.37875 * 15 2 1 17 17 C 1.36942 * 120.98212 * 129.19195 * 16 15 2 18 18 H 1.07998 * 119.99751 * 333.46672 * 17 16 15 19 19 C 1.38806 * 120.00091 * 153.46883 * 17 16 15 20 20 N 1.31620 * 120.00308 * 343.54952 * 19 17 16 21 21 Si 1.86808 * 119.99921 * 163.55360 * 19 17 16 22 22 H 1.48500 * 109.47286 * 59.99870 * 21 19 17 23 23 H 1.48497 * 109.46963 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46849 * 299.99584 * 21 19 17 25 25 C 1.47151 * 118.03662 * 309.46113 * 16 15 2 26 26 C 1.53296 * 108.38452 * 50.54058 * 25 16 15 27 27 O 1.42957 * 109.51448 * 120.15530 * 2 1 3 28 28 H 1.09000 * 109.46918 * 180.10451 * 1 2 3 29 29 H 1.08996 * 109.46462 * 300.09775 * 1 2 3 30 30 H 1.08997 * 109.46952 * 60.10182 * 1 2 3 31 31 H 1.08998 * 109.47377 * 179.89914 * 3 2 1 32 32 H 1.08994 * 109.46897 * 299.90067 * 3 2 1 33 33 H 0.97000 * 120.00396 * 359.97438 * 4 3 2 34 34 H 1.08998 * 110.16451 * 284.42237 * 9 7 5 35 35 H 1.08999 * 110.16769 * 46.20700 * 9 7 5 36 36 H 1.08999 * 110.76272 * 93.14022 * 10 9 7 37 37 H 1.09001 * 110.76216 * 216.53043 * 10 9 7 38 38 H 0.97004 * 127.76679 * 16.18022 * 14 7 5 39 39 H 1.08999 * 109.68268 * 172.65481 * 15 2 1 40 40 H 1.09004 * 109.67941 * 52.09812 * 15 2 1 41 41 H 0.97002 * 119.99982 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.68166 * 170.26049 * 25 16 15 43 43 H 1.09001 * 109.68224 * 290.81067 * 25 16 15 44 44 H 1.08996 * 109.50987 * 187.77183 * 26 25 16 45 45 H 1.08992 * 109.51312 * 67.62002 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5513 2.1337 1.1950 5 6 1.8771 3.4241 1.4079 6 8 2.5753 4.0128 0.6099 7 6 1.3728 4.1357 2.6368 8 1 0.3366 3.8554 2.8258 9 6 2.2442 3.7598 3.8511 10 6 1.9080 4.7967 4.9519 11 16 1.3235 6.2374 3.9835 12 8 -0.0690 6.4521 4.1681 13 8 2.2575 7.3072 4.0359 14 7 1.4679 5.5996 2.4418 15 6 2.0421 -0.7247 -1.2501 16 7 1.6960 -2.1502 -1.1346 17 6 1.0562 -2.8051 -2.1530 18 1 0.4294 -2.2548 -2.8391 19 6 1.2133 -4.1760 -2.3034 20 7 2.2034 -4.7955 -1.6965 21 14 0.0195 -5.1417 -3.3673 22 1 0.0625 -4.6211 -4.7574 23 1 0.4024 -6.5765 -3.3636 24 1 -1.3556 -4.9955 -2.8261 25 6 2.0522 -2.8498 0.1100 26 6 1.5397 -2.0217 1.2938 27 8 2.0076 -0.6769 1.1651 28 1 -0.3633 -1.0277 0.0019 29 1 -0.3632 0.5153 0.8891 30 1 -0.3633 0.5122 -0.8909 31 1 3.1311 1.4414 0.0018 32 1 1.6796 1.9556 -0.8908 33 1 0.9920 1.6632 1.8327 34 1 1.9978 2.7548 4.1936 35 1 3.3004 3.8195 3.5886 36 1 1.1190 4.4244 5.6053 37 1 2.7982 5.0527 5.5263 38 1 1.5876 6.0814 1.6085 39 1 3.1241 -0.6142 -1.3211 40 1 1.5704 -0.3031 -2.1378 41 1 2.3129 -5.7536 -1.8014 42 1 1.5872 -3.8356 0.1230 43 1 3.1353 -2.9533 0.1759 44 1 1.9114 -2.4490 2.2251 45 1 0.4498 -2.0290 1.2986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108402305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:52 Heat of formation + Delta-G solvation = -142.279570 kcal Electronic energy + Delta-G solvation = -29465.598252 eV Core-core repulsion = 25224.359529 eV Total energy + Delta-G solvation = -4241.238723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31358 -40.38340 -38.17469 -37.50569 -36.94032 -36.56885 -35.83311 -33.62555 -32.74239 -32.53887 -29.79471 -28.81906 -27.85351 -26.44977 -24.87530 -23.77180 -22.88858 -21.56653 -20.63794 -20.21682 -19.20258 -18.81749 -18.13915 -17.67233 -17.26261 -17.00875 -16.88045 -16.53824 -16.23972 -15.97913 -15.81891 -15.58623 -15.36591 -15.16970 -14.67967 -14.57758 -14.45345 -14.22545 -13.96715 -13.54670 -13.34221 -13.24425 -13.09401 -13.06664 -12.94943 -12.87911 -12.73736 -12.56757 -12.38580 -12.31201 -12.12539 -11.99782 -11.83969 -11.54966 -11.20429 -10.98971 -10.74168 -10.57880 -10.46626 -10.11625 -8.69442 -7.88954 -5.35670 -0.73178 1.40425 1.47992 1.49073 1.55929 1.59910 2.08965 2.49160 2.69011 2.79718 3.02340 3.26215 3.38434 3.46151 3.52252 3.77373 3.90871 3.91964 3.99863 4.09428 4.19105 4.30803 4.49929 4.54860 4.65103 4.70990 4.74159 4.75184 4.81051 4.87222 4.92342 4.94464 5.03245 5.10414 5.25698 5.35389 5.45354 5.58914 5.65510 6.07491 6.30261 6.38632 6.52058 7.09338 7.16029 7.77844 8.31010 9.16478 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002141 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.070976 B =13076.733610 C =13246.470976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 C 0.147 3.853 4 N -0.700 5.700 5 C 0.522 3.478 6 O -0.570 6.570 7 C 0.083 3.917 8 H 0.146 0.854 9 C -0.118 4.118 10 C -0.561 4.561 11 S 2.575 3.425 12 O -0.989 6.989 13 O -1.005 7.005 14 N -1.091 6.091 15 C 0.121 3.879 16 N -0.605 5.605 17 C -0.259 4.259 18 H 0.070 0.930 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.275 1.275 25 C 0.143 3.857 26 C 0.052 3.948 27 O -0.379 6.379 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.419 0.581 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.437 0.563 39 H 0.012 0.988 40 H 0.066 0.934 41 H 0.250 0.750 42 H 0.065 0.935 43 H -0.005 1.005 44 H 0.108 0.892 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 15.224 16.184 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.022 3.978 4 N -0.353 5.353 5 C 0.306 3.694 6 O -0.449 6.449 7 C -0.029 4.029 8 H 0.163 0.837 9 C -0.158 4.158 10 C -0.695 4.695 11 S 2.674 3.326 12 O -0.978 6.978 13 O -0.995 6.995 14 N -0.858 5.858 15 C -0.005 4.005 16 N -0.329 5.329 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.017 3.983 26 C -0.026 4.026 27 O -0.299 6.299 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.257 0.743 34 H 0.167 0.833 35 H 0.113 0.887 36 H 0.197 0.803 37 H 0.186 0.814 38 H 0.278 0.722 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.013 0.987 44 H 0.126 0.874 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.671 16.503 16.006 23.281 hybrid contribution -0.122 -1.698 -1.460 2.243 sum -3.793 14.805 14.546 21.098 Atomic orbital electron populations 1.22191 0.93822 1.02745 1.02986 1.22039 0.94684 0.90590 0.86907 1.21136 0.99203 0.88755 0.88665 1.45760 1.52889 1.11177 1.25437 1.20468 0.79928 0.81857 0.87125 1.90732 1.39198 1.66926 1.48026 1.22324 1.03819 0.82088 0.94645 0.83659 1.22588 1.01573 1.02554 0.89117 1.30577 1.15492 1.13629 1.09815 1.06086 0.74149 0.76588 0.75804 1.93615 1.33308 1.85669 1.85236 1.93561 1.64813 1.55217 1.85885 1.55384 1.92081 1.12560 1.25730 1.21598 0.96701 0.85462 0.96735 1.44210 1.68414 1.05832 1.14460 1.19449 1.20437 0.91103 1.07933 0.91188 1.25772 0.98736 0.98981 1.00998 1.70175 1.30622 1.08966 1.48432 0.85349 0.79114 0.77154 0.78853 1.20435 1.22275 1.20063 1.21310 0.95834 0.96155 0.85002 1.23164 0.98822 0.81950 0.98641 1.87810 1.73207 1.26042 1.42800 0.92775 0.89993 0.91467 0.91993 0.89689 0.74289 0.83349 0.88744 0.80251 0.81424 0.72218 0.97049 0.91512 0.94050 0.91678 0.98704 0.87442 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.92 71.98 0.57 -3.45 16 2 C 0.10 2.84 0.76 -10.69 -0.01 2.83 16 3 C 0.15 3.58 4.82 86.38 0.42 4.00 16 4 N -0.70 -12.29 5.15 -463.06 -2.39 -14.68 16 5 C 0.52 9.89 7.09 87.66 0.62 10.51 16 6 O -0.57 -16.02 16.28 -3.04 -0.05 -16.06 16 7 C 0.08 0.93 3.29 44.34 0.15 1.08 16 8 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 9 C -0.12 -0.64 6.12 31.63 0.19 -0.45 16 10 C -0.56 -1.72 7.49 72.64 0.54 -1.18 16 11 S 2.57 36.54 6.40 -56.49 -0.36 36.18 16 12 O -0.99 -20.50 18.14 -127.76 -2.32 -22.81 16 13 O -1.01 -23.31 18.14 -127.76 -2.32 -25.63 16 14 N -1.09 -16.76 6.62 -168.26 -1.11 -17.88 16 15 C 0.12 4.67 5.40 86.36 0.47 5.14 16 16 N -0.61 -28.31 2.57 -697.53 -1.79 -30.10 16 17 C -0.26 -13.42 9.64 84.03 0.81 -12.60 16 18 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 19 C -0.05 -2.63 4.95 84.86 0.42 -2.21 16 20 N -0.94 -53.33 11.15 21.65 0.24 -53.09 16 21 Si 0.97 42.91 29.58 68.60 2.03 44.94 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.14 6.41 5.45 86.35 0.47 6.88 16 26 C 0.05 1.68 6.60 72.08 0.48 2.15 16 27 O -0.38 -11.40 9.99 -148.98 -1.49 -12.89 16 28 H 0.05 1.67 6.11 -2.39 -0.01 1.66 16 29 H 0.08 1.48 6.86 -2.39 -0.02 1.46 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.42 5.13 7.20 -92.71 -0.67 4.46 16 34 H 0.15 -0.04 8.14 -2.39 -0.02 -0.05 16 35 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 36 H 0.18 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.44 7.63 8.53 -92.75 -0.79 6.84 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.07 2.47 7.95 -2.38 -0.02 2.45 16 41 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 42 H 0.06 3.29 6.16 -2.38 -0.01 3.27 16 43 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.06 1.79 6.25 -2.39 -0.01 1.77 16 Total: -1.00 -81.75 369.63 -4.85 -86.60 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.42 Total: 12.75 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.13 Total: 12.68 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -5.05 Total: -115.75 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -6.17 Total: -77.40 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 36.54 SS G_CDS: -0.36 Total: 36.18 kcal Total: -81.75 -4.85 -86.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108402305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.678 kcal (2) G-P(sol) polarization free energy of solvation -81.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds