Wall clock time and date at job start Wed Apr 1 2020 04:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00349 * 2 1 4 4 H 1.48504 * 109.47191 * 240.00555 * 3 2 1 5 5 H 1.48507 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47511 * 120.00105 * 3 2 1 7 7 C 1.38952 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00171 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99753 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00339 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99694 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00316 * 179.97438 * 13 12 10 15 15 C 1.52991 * 109.47267 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.47091 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47279 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99954 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00069 * 359.97438 * 18 17 16 20 20 C 1.50706 * 120.00107 * 180.02562 * 18 17 16 21 21 C 1.52989 * 109.47268 * 179.97438 * 20 18 17 22 22 C 1.53046 * 113.15245 * 275.37017 * 21 20 18 23 23 S 1.81421 * 89.89146 * 211.85103 * 22 21 20 24 24 O 1.42100 * 112.75626 * 280.47671 * 23 22 21 25 25 O 1.42102 * 112.75037 * 136.72699 * 23 22 21 26 26 C 1.53046 * 113.15293 * 174.99935 * 21 20 18 27 27 H 0.97003 * 119.99950 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00114 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47316 * 60.00004 * 12 10 9 30 30 H 1.08998 * 109.46957 * 299.99267 * 12 10 9 31 31 H 1.00909 * 110.99826 * 303.94804 * 13 12 10 32 32 H 1.09003 * 109.46672 * 59.99382 * 14 13 12 33 33 H 1.08998 * 109.46494 * 300.00179 * 14 13 12 34 34 H 1.08997 * 109.47640 * 59.99738 * 15 14 13 35 35 H 1.09007 * 109.47517 * 299.99630 * 15 14 13 36 36 H 1.09001 * 109.46856 * 60.00264 * 16 15 14 37 37 H 1.08994 * 109.47036 * 300.00069 * 16 15 14 38 38 H 0.96999 * 119.99750 * 359.97438 * 17 16 15 39 39 H 1.09003 * 109.47000 * 59.98851 * 20 18 17 40 40 H 1.09005 * 109.46757 * 299.99893 * 20 18 17 41 41 H 1.08997 * 112.53000 * 45.18339 * 21 20 18 42 42 H 1.08999 * 113.14496 * 327.11375 * 22 21 20 43 43 H 1.08999 * 113.14487 * 96.59446 * 22 21 20 44 44 H 1.08997 * 113.14353 * 263.40546 * 26 21 20 45 45 H 1.08999 * 113.14822 * 32.88700 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0014 14 6 1.4979 -7.2709 -0.0014 15 6 2.5227 -8.4068 -0.0012 16 6 1.7933 -9.7518 -0.0005 17 7 2.7746 -10.8396 -0.0010 18 6 2.3594 -12.1218 -0.0010 19 8 1.1733 -12.3751 -0.0002 20 6 3.3689 -13.2408 -0.0010 21 6 2.6395 -14.5856 -0.0004 22 6 2.2372 -15.0514 1.4009 23 16 2.4502 -16.7775 0.8846 24 8 1.3432 -17.2696 0.1418 25 8 3.1244 -17.5630 1.8580 26 6 3.5848 -15.7829 -0.1229 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0016 29 1 0.6173 -4.9205 -0.8924 30 1 0.6167 -4.9209 0.8876 31 1 2.8336 -5.9125 -0.7824 32 1 0.8733 -7.3455 -0.8916 33 1 0.8726 -7.3450 0.8884 34 1 3.1477 -8.3324 0.8887 35 1 3.1477 -8.3325 -0.8913 36 1 1.1682 -9.8266 -0.8903 37 1 1.1687 -9.8259 0.8896 38 1 3.7232 -10.6369 -0.0021 39 1 3.9938 -13.1662 0.8890 40 1 3.9938 -13.1663 -0.8910 41 1 1.8164 -14.6146 -0.7143 42 1 2.9427 -14.7449 2.1732 43 1 1.2065 -14.8042 1.6550 44 1 3.6828 -16.1486 -1.1451 45 1 4.5501 -15.6176 0.3557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161434126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:02 Heat of formation + Delta-G solvation = -127.798690 kcal Electronic energy + Delta-G solvation = -26313.225589 eV Core-core repulsion = 22072.614805 eV Total energy + Delta-G solvation = -4240.610785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.31400 -38.36493 -37.97002 -37.51305 -36.59552 -36.45324 -34.93460 -33.87398 -31.81258 -31.20401 -29.72115 -27.25501 -27.04130 -24.86113 -23.33705 -21.84238 -21.80482 -20.53093 -19.38273 -19.24640 -17.93145 -17.67253 -17.16379 -16.93628 -16.65114 -16.45399 -16.22737 -15.86899 -15.69391 -15.23202 -14.71339 -14.50149 -14.37770 -14.01225 -13.74427 -13.62975 -13.50715 -13.41709 -13.23459 -12.77606 -12.75126 -12.72511 -12.11614 -11.97293 -11.90758 -11.85927 -11.76780 -11.50008 -11.47232 -11.17905 -11.10998 -10.98117 -10.87708 -10.46064 -10.24807 -10.22034 -9.52347 -9.45368 -8.50763 -8.11592 -7.98532 -6.43785 -3.84863 -0.40297 1.44380 2.23179 2.70267 3.13174 3.18397 3.24366 3.28574 3.42520 3.55844 3.88057 3.98204 4.05283 4.25449 4.26936 4.41697 4.52506 4.61755 4.73290 4.78386 4.89151 4.95448 4.96404 4.98547 5.13707 5.20787 5.23363 5.36461 5.43263 5.43586 5.56172 5.75276 5.89686 5.93992 5.96751 6.06972 6.23777 7.07356 7.14524 7.52829 7.59595 7.80924 8.03663 8.58796 9.15373 9.51773 10.03080 10.73815 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.055656 B = 0.001131 C = 0.001120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.968779 B =24761.822627 C =24993.269331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.062 3.938 15 C -0.129 4.129 16 C 0.119 3.881 17 N -0.730 5.730 18 C 0.510 3.490 19 O -0.538 6.538 20 C -0.120 4.120 21 C -0.053 4.053 22 C -0.596 4.596 23 S 2.408 3.592 24 O -0.912 6.912 25 O -0.928 6.928 26 C -0.602 4.602 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -31.855 -0.507 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.382 5.382 18 C 0.296 3.704 19 O -0.415 6.415 20 C -0.161 4.161 21 C -0.074 4.074 22 C -0.725 4.725 23 S 2.590 3.410 24 O -0.910 6.910 25 O -0.925 6.925 26 C -0.730 4.730 27 H 0.082 0.918 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.672 -32.990 0.389 33.321 hybrid contribution 0.250 2.208 -1.118 2.487 sum 4.922 -30.782 -0.728 31.181 Atomic orbital electron populations 1.69606 1.05949 1.28304 1.50403 1.25264 0.95631 0.99730 0.97231 0.85911 0.78763 0.80423 0.79075 1.19913 1.20955 1.19871 1.19661 0.93360 0.82258 1.47832 0.87963 1.41857 1.09214 1.04596 1.64243 1.19804 0.88383 0.84730 0.84571 1.90516 1.13766 1.87079 1.55542 1.21670 0.94332 0.90912 1.01290 1.60052 1.18911 0.99903 1.51335 1.21826 0.95325 0.88817 1.00829 1.21744 0.98980 0.92350 1.03652 1.21347 0.91361 0.85121 1.02621 1.46035 1.10723 1.05788 1.75608 1.20591 0.90004 0.83783 0.76027 1.90727 1.17713 1.83916 1.49114 1.21506 0.97761 0.91392 1.05430 1.21214 0.97332 0.93386 0.95419 1.31042 1.11572 1.24836 1.05056 1.08438 0.77610 0.77075 0.77905 1.93735 1.48445 1.78576 1.70210 1.93651 1.73496 1.68107 1.57245 1.31075 1.14261 1.11283 1.16410 0.91790 0.77431 0.93803 0.89546 0.83195 0.95246 0.90775 0.90121 0.91246 0.91389 0.91173 0.76325 0.87949 0.87723 0.85837 0.83937 0.85100 0.85439 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 11 O -0.58 -15.69 15.78 5.55 0.09 -15.61 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.22 6.13 -115.06 -0.70 -10.93 16 14 C 0.06 0.68 5.69 -3.83 -0.02 0.66 16 15 C -0.13 -1.09 5.59 -26.73 -0.15 -1.24 16 16 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16 17 N -0.73 -4.67 5.56 -60.29 -0.33 -5.00 16 18 C 0.51 3.84 7.83 -10.98 -0.09 3.76 16 19 O -0.54 -6.26 15.78 5.56 0.09 -6.18 16 20 C -0.12 -0.43 5.48 -27.89 -0.15 -0.58 16 21 C -0.05 -0.22 2.80 -90.58 -0.25 -0.47 16 22 C -0.60 -2.16 7.48 37.18 0.28 -1.88 16 23 S 2.41 10.02 7.55 -107.50 -0.81 9.20 16 24 O -0.91 -7.41 18.18 -57.30 -1.04 -8.45 16 25 O -0.93 -7.03 18.18 -57.30 -1.04 -8.07 16 26 C -0.60 -1.08 7.50 37.18 0.28 -0.80 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 1.52 8.47 -40.82 -0.35 1.17 16 39 H 0.10 0.16 7.89 -51.93 -0.41 -0.25 16 40 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.12 0.66 7.71 -51.93 -0.40 0.26 16 42 H 0.14 0.27 7.94 -51.93 -0.41 -0.14 16 43 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.14 0.01 8.12 -51.93 -0.42 -0.41 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -39.48 395.05 -9.45 -48.94 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.80 Total: 8.72 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.49 Total: 3.42 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.37 Total: -53.77 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.91 Total: -38.30 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 10.02 SS G_CDS: -0.81 Total: 9.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.48 -9.45 -48.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161434126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.863 kcal (2) G-P(sol) polarization free energy of solvation -39.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds