Wall clock time and date at job start Wed Apr 1 2020 04:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00480 * 2 1 4 4 H 1.48490 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46758 * 300.00386 * 3 2 1 6 6 H 1.48499 * 109.46823 * 60.00176 * 3 2 1 7 7 C 1.38813 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99675 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47021 * 175.59106 * 10 9 7 12 12 C 1.53002 * 115.55162 * 303.90358 * 11 10 9 13 13 C 1.53004 * 109.46773 * 278.03199 * 12 11 10 14 14 N 1.46502 * 109.46585 * 175.02409 * 13 12 11 15 15 C 1.34781 * 119.99659 * 179.97438 * 14 13 12 16 16 O 1.21615 * 119.99745 * 0.02562 * 15 14 13 17 17 C 1.47415 * 120.00082 * 179.97438 * 15 14 13 18 18 N 1.36071 * 126.45150 * 359.69679 * 17 15 14 19 19 C 1.29923 * 108.48064 * 179.85805 * 18 17 15 20 20 O 1.34050 * 109.24476 * 0.40215 * 19 18 17 21 21 C 1.34253 * 108.22774 * 359.74906 * 20 19 18 22 22 C 1.50696 * 126.53050 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47368 * 270.04302 * 22 21 20 24 24 F 1.39899 * 109.47063 * 30.04215 * 22 21 20 25 25 F 1.39898 * 109.47537 * 150.04198 * 22 21 20 26 26 C 1.53008 * 117.51895 * 89.60067 * 11 10 9 27 27 C 1.52995 * 117.50008 * 158.22935 * 11 10 9 28 28 H 0.97003 * 119.99259 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00061 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46915 * 55.59359 * 10 9 7 31 31 H 1.09002 * 109.47152 * 295.59337 * 10 9 7 32 32 H 1.09001 * 109.47113 * 158.03601 * 12 11 10 33 33 H 1.08995 * 109.47117 * 38.03078 * 12 11 10 34 34 H 1.08994 * 109.46969 * 55.02474 * 13 12 11 35 35 H 1.08997 * 109.46875 * 295.01842 * 13 12 11 36 36 H 0.96992 * 120.00411 * 359.97438 * 14 13 12 37 37 H 1.08005 * 125.38097 * 180.11494 * 19 18 17 38 38 H 1.08995 * 117.49802 * 214.97015 * 26 11 10 39 39 H 1.08999 * 117.49483 * 359.97438 * 26 11 10 40 40 H 1.09003 * 117.50096 * 359.97438 * 27 11 10 41 41 H 1.09003 * 117.49990 * 144.99909 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0675 -4.8176 0.1095 12 6 0.1328 -4.7740 1.3201 13 6 0.8608 -5.3280 2.5465 14 7 0.0094 -5.1770 3.7291 15 6 0.4464 -5.5988 4.9323 16 8 1.5477 -6.1043 5.0363 17 6 -0.4100 -5.4464 6.1225 18 7 -1.6542 -4.8968 6.1582 19 6 -2.0897 -4.9424 7.3814 20 8 -1.1558 -5.5039 8.1622 21 6 -0.1026 -5.8237 7.3935 22 6 1.1766 -6.4759 7.8509 23 9 2.0976 -5.4891 8.2187 24 9 0.9127 -7.3003 8.9500 25 9 1.7072 -7.2438 6.8088 26 6 0.5112 -5.3994 -1.1918 27 6 1.5330 -6.1923 -0.3744 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.7431 -3.6815 0.8457 31 1 2.6233 -3.7491 -0.9290 32 1 -0.7513 -5.3788 1.1184 33 1 -0.1674 -3.7436 1.5104 34 1 1.7906 -4.7792 2.6957 35 1 1.0828 -6.3837 2.3911 36 1 -0.8687 -4.7735 3.6463 37 1 -3.0504 -4.5806 7.7171 38 1 -0.5204 -5.7510 -1.1853 39 1 0.8506 -4.9548 -2.1273 40 1 2.5448 -6.2698 -0.7724 41 1 1.1735 -7.0657 0.1697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165878528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:13 Heat of formation + Delta-G solvation = -140.674798 kcal Electronic energy + Delta-G solvation = -30472.394339 eV Core-core repulsion = 25553.924512 eV Total energy + Delta-G solvation = -4918.469826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.40686 -48.95671 -48.85654 -44.88630 -40.86427 -39.53317 -36.39137 -36.15053 -35.77025 -32.88421 -32.78600 -31.27406 -28.02383 -27.62356 -25.72242 -24.61839 -24.36890 -23.47068 -22.86354 -21.95795 -20.55267 -19.89713 -19.86368 -19.53199 -19.13141 -18.75687 -18.07003 -17.39042 -16.89381 -16.87212 -16.60272 -16.13409 -15.88303 -15.76807 -15.58931 -15.38823 -15.33394 -15.22040 -15.11174 -14.99892 -14.76212 -14.70271 -14.22749 -13.94452 -13.88999 -13.18249 -13.02718 -12.83298 -12.81795 -12.54990 -12.26706 -12.24719 -12.09191 -11.94467 -11.87224 -11.44866 -11.09450 -10.91516 -10.84318 -10.54476 -10.22302 -8.96269 -7.94502 -5.21632 -0.70878 0.44086 0.77503 1.46535 1.46728 1.56770 1.65692 1.78959 1.89895 2.42406 2.54521 2.74207 2.89930 2.97095 2.99560 3.32826 3.39041 3.76089 3.83605 3.85526 3.98072 4.08008 4.09952 4.25225 4.39318 4.47939 4.61938 4.81196 4.86123 4.93531 4.97442 5.09223 5.14823 5.25706 5.30558 5.35522 5.38627 5.50078 5.92517 6.28349 6.30203 6.86697 7.35566 8.11784 8.37443 9.28901 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.002686 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.631761 B =10422.725451 C =11482.098931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.188 3.812 11 C -0.141 4.141 12 C -0.079 4.079 13 C 0.133 3.867 14 N -0.693 5.693 15 C 0.578 3.422 16 O -0.542 6.542 17 C 0.010 3.990 18 N -0.493 5.493 19 C 0.256 3.744 20 O -0.167 6.167 21 C -0.095 4.095 22 C 0.565 3.435 23 F -0.165 7.165 24 F -0.162 7.162 25 F -0.137 7.137 26 C -0.164 4.164 27 C -0.150 4.150 28 H 0.251 0.749 29 H 0.377 0.623 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.417 0.583 37 H 0.329 0.671 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -17.176 16.255 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.117 4.117 13 C 0.010 3.990 14 N -0.344 5.344 15 C 0.362 3.638 16 O -0.419 6.419 17 C -0.112 4.112 18 N -0.221 5.221 19 C 0.030 3.970 20 O -0.053 6.053 21 C -0.154 4.154 22 C 0.509 3.491 23 F -0.147 7.147 24 F -0.143 7.143 25 F -0.118 7.118 26 C -0.201 4.201 27 C -0.187 4.187 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.254 0.746 37 H 0.343 0.657 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.049 -17.204 15.800 24.129 hybrid contribution 0.225 1.242 0.443 1.338 sum -5.824 -15.961 16.242 23.505 Atomic orbital electron populations 1.69806 1.06330 1.25868 1.59510 1.25466 0.96397 1.00702 1.03784 0.85151 0.78177 0.80195 0.76724 1.19463 1.21875 1.22038 1.19631 0.91337 0.85567 1.41118 0.91236 1.42459 1.05690 1.00629 1.89097 1.20232 0.92636 0.84089 0.96895 1.21386 1.01432 0.95162 0.96195 1.21114 0.97427 1.01662 0.91487 1.21348 0.93173 1.01592 0.82856 1.45780 1.21459 1.60394 1.06764 1.17019 0.85164 0.79098 0.82519 1.90929 1.20672 1.44891 1.85447 1.21645 0.94206 1.01902 0.93482 1.70984 1.07767 1.19722 1.23594 1.29921 0.95304 0.89747 0.82016 1.84426 1.21940 1.59551 1.39409 1.22937 0.91981 1.09480 0.90954 1.16488 0.80605 0.76560 0.75413 1.93278 1.67814 1.62084 1.91487 1.93264 1.93795 1.72912 1.54333 1.93424 1.86435 1.75134 1.56789 1.23058 0.99721 1.03136 0.94147 1.23064 0.99772 0.93234 1.02628 0.94016 0.79006 0.96537 0.96761 0.89150 0.92268 0.93127 0.89838 0.74625 0.65685 0.87381 0.89878 0.88416 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.51 13.06 21.65 0.28 -58.23 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.35 5.23 -343.45 -1.80 -39.14 16 10 C 0.19 7.63 6.15 86.38 0.53 8.16 16 11 C -0.14 -4.32 1.65 -52.18 -0.09 -4.40 16 12 C -0.08 -2.26 5.20 30.60 0.16 -2.10 16 13 C 0.13 3.73 5.49 86.38 0.47 4.21 16 14 N -0.69 -18.61 5.55 -466.36 -2.59 -21.20 16 15 C 0.58 16.82 7.76 86.66 0.67 17.49 16 16 O -0.54 -18.46 13.15 -4.08 -0.05 -18.51 16 17 C 0.01 0.23 6.96 40.41 0.28 0.51 16 18 N -0.49 -9.20 11.06 -305.16 -3.37 -12.57 16 19 C 0.26 2.43 13.19 130.52 1.72 4.15 16 20 O -0.17 -2.49 10.72 0.42 0.00 -2.48 16 21 C -0.09 -2.07 6.75 25.19 0.17 -1.90 16 22 C 0.56 13.19 3.34 71.23 0.24 13.43 16 23 F -0.17 -4.14 17.30 44.97 0.78 -3.36 16 24 F -0.16 -3.30 17.30 44.97 0.78 -2.52 16 25 F -0.14 -3.77 13.48 44.97 0.61 -3.16 16 26 C -0.16 -4.35 9.87 30.60 0.30 -4.05 16 27 C -0.15 -3.52 9.57 30.59 0.29 -3.22 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.38 20.06 6.80 -92.71 -0.63 19.42 16 30 H 0.02 0.70 7.96 -2.39 -0.02 0.69 16 31 H 0.01 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.09 2.09 7.93 -2.39 -0.02 2.07 16 33 H 0.06 2.09 6.94 -2.39 -0.02 2.08 16 34 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 35 H 0.08 2.12 7.72 -2.39 -0.02 2.10 16 36 H 0.42 10.06 8.20 -92.71 -0.76 9.30 16 37 H 0.33 -1.55 8.06 -2.91 -0.02 -1.57 16 38 H 0.11 2.47 8.07 -2.39 -0.02 2.45 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.11 2.19 7.90 -2.39 -0.02 2.17 16 Total: -1.00 -74.26 367.21 2.45 -71.81 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.28 Total: 25.07 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.06 Total: 15.65 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -7.48 Total: -131.14 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 9 Polarization: -11.20 SS G_CDS: 2.16 Total: -9.04 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.26 2.45 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165878528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.866 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds