Wall clock time and date at job start Wed Apr 1 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99848 * 2 1 4 4 H 1.48499 * 109.47370 * 240.00713 * 3 2 1 5 5 H 1.48501 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47144 * 120.00759 * 3 2 1 7 7 C 1.38810 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99418 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99834 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46984 * 175.59350 * 10 9 7 12 12 C 1.53002 * 115.54646 * 303.89597 * 11 10 9 13 13 C 1.52997 * 109.47341 * 278.03412 * 12 11 10 14 14 N 1.46492 * 109.47391 * 175.02322 * 13 12 11 15 15 C 1.34782 * 119.99990 * 179.72254 * 14 13 12 16 16 O 1.21608 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.47418 * 119.99663 * 180.02562 * 15 14 13 18 18 C 1.36098 * 126.44757 * 179.71449 * 17 15 14 19 19 O 1.34259 * 106.94811 * 179.89853 * 18 17 15 20 20 C 1.34045 * 108.22941 * 0.36472 * 19 18 17 21 21 C 1.50700 * 125.37994 * 179.80015 * 20 19 18 22 22 F 1.39896 * 109.47257 * 269.96164 * 21 20 19 23 23 F 1.39899 * 109.46808 * 29.96500 * 21 20 19 24 24 F 1.39906 * 109.47018 * 149.95666 * 21 20 19 25 25 N 1.29939 * 109.24333 * 359.76887 * 20 19 18 26 26 C 1.52995 * 117.52007 * 89.59467 * 11 10 9 27 27 C 1.52999 * 117.50055 * 158.22838 * 11 10 9 28 28 H 0.97000 * 120.00266 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99931 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47308 * 55.59109 * 10 9 7 31 31 H 1.09003 * 109.47325 * 295.58976 * 10 9 7 32 32 H 1.08994 * 109.47105 * 158.03478 * 12 11 10 33 33 H 1.09010 * 109.47087 * 38.03426 * 12 11 10 34 34 H 1.09009 * 109.46956 * 55.02309 * 13 12 11 35 35 H 1.08998 * 109.47187 * 295.02556 * 13 12 11 36 36 H 0.97003 * 119.99862 * 0.02562 * 14 13 12 37 37 H 1.07997 * 126.51865 * 0.03528 * 18 17 15 38 38 H 1.08997 * 117.49892 * 214.97104 * 26 11 10 39 39 H 1.08999 * 117.49765 * 359.97438 * 26 11 10 40 40 H 1.08999 * 117.49492 * 359.97250 * 27 11 10 41 41 H 1.08995 * 117.49768 * 144.99479 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1037 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0676 -4.8176 0.1103 12 6 0.1322 -4.7736 1.3203 13 6 0.8592 -5.3269 2.5475 14 7 0.0071 -5.1755 3.7294 15 6 0.4413 -5.6014 4.9322 16 8 1.5406 -6.1109 5.0363 17 6 -0.4164 -5.4495 6.1215 18 6 -0.1142 -5.8357 7.3911 19 8 -1.1660 -5.5110 8.1598 20 6 -2.0973 -4.9455 7.3790 21 6 -3.4375 -4.4392 7.8464 22 9 -4.3807 -5.4688 7.7609 23 9 -3.3362 -4.0085 9.1736 24 9 -3.8396 -3.3700 7.0387 25 7 -1.6617 -4.9022 6.1556 26 6 0.5124 -5.3999 -1.1910 27 6 1.5336 -6.1925 -0.3727 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 2.7427 -3.6810 0.8473 31 1 2.6242 -3.7494 -0.9274 32 1 -0.7518 -5.3784 1.1183 33 1 -0.1683 -3.7430 1.5100 34 1 1.7890 -4.7780 2.6971 35 1 1.0815 -6.3827 2.3927 36 1 -0.8713 -4.7728 3.6456 37 1 0.7990 -6.3106 7.7182 38 1 -0.5193 -5.7516 -1.1852 39 1 0.8524 -4.9557 -2.1265 40 1 2.5457 -6.2700 -0.7698 41 1 1.1738 -7.0657 0.1715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166000972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:39 Heat of formation + Delta-G solvation = -120.465296 kcal Electronic energy + Delta-G solvation = -29721.498533 eV Core-core repulsion = 24803.905056 eV Total energy + Delta-G solvation = -4917.593477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.84406 -48.37991 -48.32662 -44.25410 -39.74740 -38.27943 -35.71892 -34.94445 -33.93239 -32.04280 -30.79800 -30.02037 -27.39056 -26.06499 -25.07967 -23.20940 -22.74612 -22.57883 -21.81426 -21.05897 -19.66826 -19.33289 -19.02474 -18.49735 -17.74501 -17.41279 -17.08946 -16.85281 -16.06288 -15.62203 -15.16944 -15.11719 -15.06879 -14.72118 -14.55838 -14.43765 -14.42937 -14.41672 -14.34597 -13.85446 -13.44778 -13.42617 -13.09384 -12.71105 -12.35487 -12.15249 -11.93264 -11.68141 -11.46451 -11.15427 -10.94637 -10.82566 -10.70942 -10.37401 -10.15020 -10.00575 -9.92643 -9.65479 -9.34103 -9.11534 -8.83136 -6.89539 -5.75045 -3.03059 0.30227 0.97892 1.12157 2.08442 2.66357 2.89493 2.94542 3.45222 3.49658 3.50482 3.51199 3.58079 3.98552 4.03961 4.20328 4.56348 4.62012 4.85369 5.00047 5.04316 5.12001 5.15163 5.29823 5.51386 5.59847 5.65888 5.72213 5.89343 6.11711 6.15504 6.19521 6.31808 6.42010 6.44440 6.49356 6.59443 6.75531 6.83050 7.34707 7.71098 7.93971 8.44075 9.55576 10.13568 10.49067 11.47714 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.002596 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.788879 B =10782.609179 C =12460.137138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.188 3.812 11 C -0.118 4.118 12 C -0.093 4.093 13 C 0.125 3.875 14 N -0.703 5.703 15 C 0.600 3.400 16 O -0.532 6.532 17 C -0.064 4.064 18 C 0.055 3.945 19 O -0.168 6.168 20 C 0.094 3.906 21 C 0.587 3.413 22 F -0.153 7.153 23 F -0.156 7.156 24 F -0.138 7.138 25 N -0.387 5.387 26 C -0.166 4.166 27 C -0.178 4.178 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.025 0.975 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -15.966 16.000 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.002 3.998 14 N -0.352 5.352 15 C 0.384 3.616 16 O -0.410 6.410 17 C -0.187 4.187 18 C -0.019 4.019 19 O -0.051 6.051 20 C -0.117 4.117 21 C 0.531 3.469 22 F -0.134 7.134 23 F -0.137 7.137 24 F -0.119 7.119 25 N -0.119 5.119 26 C -0.203 4.203 27 C -0.215 4.215 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.265 0.735 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.811 -15.918 15.583 23.021 hybrid contribution -0.035 0.984 0.514 1.111 sum -5.845 -14.934 16.097 22.722 Atomic orbital electron populations 1.69642 1.05051 1.25711 1.57758 1.24707 0.95501 0.97577 1.03060 0.86289 0.78541 0.83652 0.77830 1.21316 1.21698 1.21321 1.19181 0.90987 0.84186 1.42714 0.91334 1.42298 1.05882 0.99644 1.89368 1.20177 0.91862 0.84200 0.97738 1.21559 1.00883 0.94910 0.94574 1.21278 0.96784 1.03214 0.91850 1.21481 0.94218 1.01259 0.82838 1.45873 1.21407 1.60698 1.07264 1.16528 0.84646 0.78886 0.81516 1.90857 1.19897 1.44952 1.85250 1.22094 0.93010 1.07063 0.96496 1.25768 0.90718 0.96679 0.88751 1.84408 1.23067 1.58299 1.39317 1.25466 0.94495 1.05514 0.86184 1.15962 0.79531 0.75995 0.75385 1.93323 1.65595 1.58643 1.95844 1.93308 1.95993 1.89818 1.34559 1.93360 1.90483 1.55220 1.72857 1.70681 1.09238 1.13530 1.18446 1.22996 0.98260 1.03409 0.95611 1.22969 0.99693 0.94427 1.04444 0.93505 0.78117 0.95677 0.96446 0.91812 0.89001 0.90405 0.91322 0.75351 0.73549 0.89280 0.88662 0.88909 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.09 5.23 -59.90 -0.31 -18.40 16 10 C 0.19 3.75 6.15 -4.04 -0.02 3.72 16 11 C -0.12 -1.85 1.65 -154.51 -0.25 -2.11 16 12 C -0.09 -1.36 5.20 -26.73 -0.14 -1.50 16 13 C 0.12 1.73 5.49 -4.05 -0.02 1.71 16 14 N -0.70 -9.28 5.55 -61.39 -0.34 -9.62 16 15 C 0.60 8.08 7.81 -12.52 -0.10 7.98 16 16 O -0.53 -8.29 16.89 5.27 0.09 -8.20 16 17 C -0.06 -0.72 6.99 -83.02 -0.58 -1.31 16 18 C 0.06 0.45 11.95 29.96 0.36 0.81 16 19 O -0.17 -1.45 10.70 6.52 0.07 -1.38 16 20 C 0.09 0.93 7.53 -13.08 -0.10 0.83 16 21 C 0.59 5.10 3.57 36.01 0.13 5.22 16 22 F -0.15 -1.28 17.30 2.25 0.04 -1.24 16 23 F -0.16 -1.27 17.28 2.25 0.04 -1.23 16 24 F -0.14 -1.36 17.23 2.25 0.04 -1.32 16 25 N -0.39 -4.50 10.96 -7.65 -0.08 -4.59 16 26 C -0.17 -2.36 9.87 -26.73 -0.26 -2.62 16 27 C -0.18 -2.29 9.58 -26.73 -0.26 -2.54 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.38 10.00 6.80 -40.82 -0.28 9.72 16 30 H 0.03 0.52 7.96 -51.93 -0.41 0.10 16 31 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.09 1.60 6.94 -51.92 -0.36 1.24 16 34 H 0.08 1.24 7.96 -51.92 -0.41 0.83 16 35 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 36 H 0.41 5.08 8.20 -40.82 -0.33 4.74 16 37 H 0.25 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.09 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.01 7.90 -51.93 -0.41 0.60 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -32.25 374.41 -5.29 -37.54 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.68 Total: 9.66 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.50 Total: 2.91 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.01 Total: -59.87 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.16 Total: -9.57 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.12 Total: -3.79 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.25 -5.29 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166000972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.923 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds