Wall clock time and date at job start Wed Apr 1 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00432 * 2 1 4 4 H 1.48504 * 109.46613 * 269.99902 * 3 2 1 5 5 H 1.48501 * 109.47063 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47186 * 150.00433 * 3 2 1 7 7 C 1.38814 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00139 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00036 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47188 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47204 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47011 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47011 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47021 * 179.97438 * 15 14 13 17 17 C 1.34781 * 119.99867 * 180.27613 * 16 15 14 18 18 O 1.21683 * 119.99966 * 359.72582 * 17 16 15 19 19 C 1.46680 * 119.99897 * 179.72910 * 17 16 15 20 20 S 1.76212 * 126.13198 * 354.40946 * 19 17 16 21 21 C 1.70953 * 90.31494 * 179.97438 * 20 19 17 22 22 N 1.29428 * 110.39275 * 0.34859 * 21 20 19 23 23 C 1.30947 * 117.35878 * 359.72115 * 22 21 20 24 24 C 1.50704 * 122.90151 * 180.02562 * 23 22 21 25 25 F 1.39894 * 109.47348 * 122.08115 * 24 23 22 26 26 F 1.39904 * 109.46987 * 242.08332 * 24 23 22 27 27 H 0.97010 * 119.99730 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99763 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.47116 * 60.00118 * 10 9 7 30 30 H 1.08999 * 109.47159 * 299.99984 * 10 9 7 31 31 H 1.08998 * 109.47264 * 59.99986 * 11 10 9 32 32 H 1.09007 * 109.46834 * 299.99583 * 11 10 9 33 33 H 1.08998 * 109.46914 * 59.99913 * 12 11 10 34 34 H 1.08998 * 109.46727 * 300.00149 * 12 11 10 35 35 H 1.08998 * 109.46504 * 59.99998 * 13 12 11 36 36 H 1.08999 * 109.47278 * 300.00225 * 13 12 11 37 37 H 1.08998 * 109.47029 * 60.00357 * 14 13 12 38 38 H 1.08999 * 109.47265 * 300.00211 * 14 13 12 39 39 H 1.08998 * 109.46933 * 60.00298 * 15 14 13 40 40 H 1.08999 * 109.47278 * 300.00203 * 15 14 13 41 41 H 0.96998 * 120.00244 * 0.02562 * 16 15 14 42 42 H 1.07999 * 124.80482 * 180.10688 * 21 20 19 43 43 H 1.09000 * 109.47161 * 2.08140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 6 1.8284 -6.1449 -0.0018 13 6 0.8340 -7.3077 -0.0018 14 6 1.5990 -8.6327 -0.0018 15 6 0.6046 -9.7956 -0.0012 16 7 1.3370 -11.0643 -0.0018 17 6 0.6631 -12.2315 -0.0070 18 8 -0.5538 -12.2314 -0.0062 19 6 1.3964 -13.5018 -0.0136 20 16 3.1425 -13.6928 -0.1543 21 6 2.9734 -15.3916 -0.0642 22 7 1.7254 -15.7152 0.0494 23 6 0.8514 -14.7405 0.0805 24 6 -0.6317 -14.9747 0.2100 25 9 -1.1114 -14.3105 1.3439 26 9 -1.2823 -14.4849 -0.9276 27 1 -0.4850 0.8402 -0.0004 28 1 0.3554 -2.3881 0.0002 29 1 2.6844 -3.7147 0.8894 30 1 2.6844 -3.7147 -0.8905 31 1 0.4371 -4.7618 -0.8914 32 1 0.4365 -4.7621 0.8887 33 1 2.4550 -6.2031 0.8881 34 1 2.4550 -6.2021 -0.8918 35 1 0.2072 -7.2496 -0.8916 36 1 0.2077 -7.2502 0.8883 37 1 2.2255 -8.6905 0.8882 38 1 2.2256 -8.6905 -0.8918 39 1 -0.0223 -9.7380 -0.8910 40 1 -0.0217 -9.7376 0.8890 41 1 2.3070 -11.0644 -0.0021 42 1 3.7917 -16.0953 -0.1012 43 1 -0.8237 -16.0433 0.3065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179000275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:51 Heat of formation + Delta-G solvation = -96.259665 kcal Electronic energy + Delta-G solvation = -26333.602884 eV Core-core repulsion = 21983.272218 eV Total energy + Delta-G solvation = -4350.330666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.122 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.22566 -47.21892 -40.90788 -39.69664 -36.89838 -35.49671 -34.04096 -32.31081 -31.72989 -30.11944 -28.57411 -26.80927 -25.34444 -24.26507 -22.68324 -22.00062 -21.17859 -20.68070 -20.23743 -19.69657 -17.97047 -17.57000 -16.99890 -16.94448 -16.84307 -16.39806 -16.16710 -15.66847 -15.35312 -14.94426 -14.64663 -14.30573 -14.21715 -14.01230 -13.54404 -13.51557 -13.41935 -13.28959 -12.98600 -12.84346 -12.72940 -12.40214 -11.78631 -11.54982 -11.40252 -11.21434 -10.93950 -10.85743 -10.75030 -10.72666 -10.54056 -10.37413 -10.36217 -10.26943 -9.97440 -9.96407 -9.64002 -9.56291 -8.84091 -6.88395 -5.73619 -3.02087 -0.62909 0.29152 0.68140 1.55147 2.48517 2.53035 2.79984 3.45130 3.49720 3.51908 3.67881 3.87261 4.07168 4.22692 4.47814 4.63157 4.63461 4.67913 4.69161 4.88128 4.89615 5.19371 5.31983 5.35157 5.53692 5.61650 5.63950 5.67260 5.87181 5.93181 5.95793 6.11496 6.32471 6.33392 6.41439 6.48185 6.61812 6.85879 6.91782 6.95813 7.57144 7.72179 8.45733 9.56340 10.16069 10.50508 11.49467 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.001348 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.682829 B =20764.206655 C =21598.227392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.118 3.882 16 N -0.721 5.721 17 C 0.583 3.417 18 O -0.495 6.495 19 C -0.248 4.248 20 S 0.207 5.793 21 C 0.034 3.966 22 N -0.454 5.454 23 C 0.054 3.946 24 C 0.355 3.645 25 F -0.182 7.182 26 F -0.180 7.180 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.398 0.602 42 H 0.216 0.784 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -38.552 -0.056 39.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.005 4.005 16 N -0.373 5.373 17 C 0.366 3.634 18 O -0.370 6.370 19 C -0.373 4.373 20 S 0.464 5.536 21 C -0.261 4.261 22 N -0.167 5.167 23 C -0.087 4.087 24 C 0.298 3.702 25 F -0.163 7.163 26 F -0.161 7.161 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.232 0.768 42 H 0.232 0.768 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.265 -38.286 -0.123 38.969 hybrid contribution -0.043 0.784 0.053 0.787 sum 7.222 -37.502 -0.071 38.191 Atomic orbital electron populations 1.69667 1.05121 1.25596 1.57914 1.24754 0.95545 0.97713 1.03148 0.86175 0.78618 0.83820 0.77503 1.21732 1.21752 1.20791 1.19262 0.91047 0.84300 1.42498 0.91221 1.42396 1.05913 1.00151 1.89465 1.20654 0.93651 0.85728 0.97509 1.21732 0.98898 0.93812 1.02039 1.21497 0.97849 0.93866 1.01900 1.21515 0.98449 0.92665 1.02791 1.21844 0.98231 0.93996 1.02866 1.21566 0.94964 0.80673 1.03254 1.45900 1.10088 1.05833 1.75511 1.16662 0.86999 0.81835 0.77867 1.90959 1.11900 1.86416 1.47746 1.25854 0.97823 0.99145 1.14526 1.84078 1.01426 1.05609 1.62534 1.28757 0.97214 0.98432 1.01739 1.65852 1.00779 1.34572 1.15477 1.21124 0.97955 0.87155 1.02416 1.19467 0.82428 0.95390 0.72901 1.93064 1.88555 1.83790 1.50874 1.93073 1.81753 1.90332 1.50974 0.93540 0.78327 0.96607 0.96611 0.92064 0.92058 0.92090 0.92085 0.91503 0.91501 0.91164 0.91171 0.90734 0.90700 0.76824 0.76805 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.74 -19.36 5.60 -59.91 -0.34 -19.70 16 10 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 11 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 12 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 13 C -0.12 -1.12 5.21 -26.73 -0.14 -1.26 16 14 C -0.13 -0.97 5.33 -26.73 -0.14 -1.11 16 15 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 16 N -0.72 -5.59 5.55 -61.62 -0.34 -5.93 16 17 C 0.58 6.00 7.71 -12.85 -0.10 5.90 16 18 O -0.50 -6.88 13.09 5.20 0.07 -6.82 16 19 C -0.25 -2.04 6.44 -37.10 -0.24 -2.28 16 20 S 0.21 0.78 22.37 -107.50 -2.40 -1.62 16 21 C 0.03 0.13 12.22 51.75 0.63 0.76 16 22 N -0.45 -3.19 10.50 -11.53 -0.12 -3.31 16 23 C 0.05 0.47 6.25 -83.89 -0.52 -0.06 16 24 C 0.35 3.28 5.07 36.01 0.18 3.46 16 25 F -0.18 -2.09 15.74 2.25 0.04 -2.06 16 26 F -0.18 -2.09 15.80 2.25 0.04 -2.05 16 27 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 2.03 7.67 -40.82 -0.31 1.72 16 42 H 0.22 -0.07 8.06 -52.49 -0.42 -0.50 16 43 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -36.37 384.17 -8.57 -44.94 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.09 Total: 3.01 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.91 Total: -1.82 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.07 Total: -57.08 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: 0.07 Total: -6.82 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.40 Total: -1.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.37 -8.57 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179000275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.319 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds