Wall clock time and date at job start Wed Apr 1 2020 04:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48507 * 109.47083 * 269.99990 * 3 2 1 5 5 H 1.48505 * 109.47221 * 29.99791 * 3 2 1 6 6 H 1.48500 * 109.47523 * 149.99621 * 3 2 1 7 7 C 1.38812 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99502 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99592 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46863 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46725 * 60.00078 * 11 10 9 13 13 C 1.54811 * 109.46689 * 179.97438 * 11 10 9 14 14 N 1.45122 * 109.53581 * 187.88200 * 13 11 10 15 15 C 1.34780 * 118.75354 * 90.71516 * 14 13 11 16 16 O 1.21283 * 120.00251 * 354.91868 * 15 14 13 17 17 C 1.50704 * 119.99698 * 174.91622 * 15 14 13 18 18 H 1.08998 * 108.58171 * 45.66592 * 17 15 14 19 19 C 1.53196 * 108.64643 * 287.66263 * 17 15 14 20 20 C 1.55344 * 106.34678 * 211.21696 * 19 17 15 21 21 S 1.83897 * 99.54443 * 37.18571 * 20 19 17 22 22 O 1.42105 * 111.46809 * 215.82142 * 21 20 19 23 23 O 1.42102 * 111.61591 * 75.80483 * 21 20 19 24 24 N 1.46447 * 108.64326 * 163.66062 * 17 15 14 25 25 C 1.47504 * 122.48697 * 270.73350 * 14 13 11 26 26 C 1.53573 * 111.02401 * 41.60848 * 25 14 13 27 27 C 1.51539 * 109.57920 * 39.98336 * 26 25 14 28 28 O 1.38110 * 109.39967 * 300.12177 * 11 10 9 29 29 H 0.96996 * 120.00117 * 359.97438 * 1 2 3 30 30 H 0.96991 * 120.00266 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47604 * 59.99551 * 10 9 7 32 32 H 1.09009 * 109.46715 * 299.99380 * 10 9 7 33 33 H 1.08997 * 109.45645 * 67.86696 * 13 11 10 34 34 H 1.09001 * 109.44906 * 307.90214 * 13 11 10 35 35 H 1.08997 * 110.10466 * 330.53716 * 19 17 15 36 36 H 1.09002 * 110.10107 * 92.14831 * 19 17 15 37 37 H 1.08997 * 111.49622 * 279.58422 * 20 19 17 38 38 H 1.08998 * 111.38127 * 154.73773 * 20 19 17 39 39 H 0.97000 * 126.08847 * 302.85663 * 24 17 15 40 40 H 1.08997 * 109.16826 * 281.21348 * 25 14 13 41 41 H 1.09001 * 109.12506 * 161.97623 * 25 14 13 42 42 H 1.08997 * 109.45302 * 279.94677 * 26 25 14 43 43 H 1.09005 * 109.43339 * 160.00213 * 26 25 14 44 44 H 1.08991 * 109.59109 * 28.37494 * 27 26 25 45 45 H 1.08999 * 109.58746 * 148.67011 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.4376 -4.7625 -0.8883 13 6 1.8381 -6.1604 0.0026 14 7 0.9076 -7.2582 -0.1846 15 6 0.6434 -7.6776 -1.4379 16 8 1.1068 -7.0817 -2.3872 17 6 -0.2278 -8.8872 -1.6597 18 1 -1.1039 -8.8069 -1.0162 19 6 0.5606 -10.1385 -1.2602 20 6 0.0551 -11.2853 -2.1782 21 16 -0.1856 -10.3429 -3.7389 22 8 -1.3133 -10.8155 -4.4631 23 8 1.0526 -10.0624 -4.3773 24 7 -0.6712 -8.8952 -3.0554 25 6 0.2397 -7.9320 0.9449 26 6 -0.2242 -6.9142 1.9973 27 6 -0.7803 -5.6860 1.3054 28 8 0.2685 -4.7428 1.1285 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7149 -0.8879 33 1 2.3549 -6.2808 0.9547 34 1 2.5664 -6.1592 -0.8084 35 1 1.6269 -9.9751 -1.4160 36 1 0.3675 -10.3855 -0.2162 37 1 -0.8851 -11.7014 -1.8165 38 1 0.8104 -12.0623 -2.2959 39 1 -1.1592 -8.1870 -3.5040 40 1 0.9361 -8.6319 1.4066 41 1 -0.6252 -8.4810 0.5724 42 1 0.6215 -6.6272 2.6222 43 1 -0.9992 -7.3629 2.6188 44 1 -1.1871 -5.9665 0.3340 45 1 -1.5674 -5.2464 1.9181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202080980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:36 Heat of formation + Delta-G solvation = -106.457413 kcal Electronic energy + Delta-G solvation = -29928.641056 eV Core-core repulsion = 25688.955698 eV Total energy + Delta-G solvation = -4239.685358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02343 -38.93319 -37.45656 -36.80599 -36.21027 -35.80755 -34.61467 -32.90995 -32.30847 -30.93617 -29.48784 -27.61470 -26.50524 -25.01668 -23.38459 -22.40387 -21.77196 -20.96784 -20.03512 -19.54290 -18.16443 -18.09011 -17.20046 -17.04234 -16.52537 -16.42527 -16.12506 -15.90108 -15.28516 -14.92434 -14.83096 -14.42167 -14.23912 -13.97048 -13.93576 -13.66627 -13.25621 -13.06201 -12.94735 -12.72362 -12.48322 -12.41793 -12.33251 -12.31082 -12.04056 -11.91650 -11.69073 -11.45862 -11.08126 -10.99525 -10.81578 -10.75824 -10.56353 -10.29532 -10.01266 -9.68419 -9.52300 -9.46094 -8.81853 -8.66382 -6.83450 -5.68333 -2.96454 -0.20622 2.05069 2.28317 2.67687 3.12793 3.32531 3.48906 3.53422 3.55323 3.66140 3.89283 3.91216 3.98779 4.26639 4.46314 4.54429 4.56492 4.65483 4.75647 4.81360 4.87780 4.92643 5.13652 5.17683 5.26739 5.29021 5.36195 5.40065 5.54284 5.64472 5.78044 5.89692 5.94147 6.05659 6.33974 6.37871 6.64478 6.65970 6.77817 7.03594 7.75694 7.89942 7.96789 8.50083 9.61637 10.19924 10.55952 11.54615 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.002566 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.937185 B =10909.998277 C =11716.191021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.088 3.912 12 H 0.052 0.948 13 C 0.081 3.919 14 N -0.607 5.607 15 C 0.492 3.508 16 O -0.503 6.503 17 C 0.096 3.904 18 H 0.110 0.890 19 C -0.120 4.120 20 C -0.591 4.591 21 S 2.571 3.429 22 O -0.956 6.956 23 O -0.940 6.940 24 N -1.076 6.076 25 C 0.099 3.901 26 C -0.167 4.167 27 C 0.072 3.928 28 O -0.366 6.366 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.441 0.559 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 -29.216 3.207 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.028 3.972 12 H 0.070 0.930 13 C -0.042 4.042 14 N -0.342 5.342 15 C 0.275 3.725 16 O -0.376 6.376 17 C -0.017 4.017 18 H 0.127 0.873 19 C -0.159 4.159 20 C -0.721 4.721 21 S 2.664 3.336 22 O -0.946 6.946 23 O -0.929 6.929 24 N -0.842 5.842 25 C -0.023 4.023 26 C -0.206 4.206 27 C -0.005 4.005 28 O -0.284 6.284 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.282 0.718 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.470 -28.930 1.851 29.094 hybrid contribution -0.184 0.994 0.519 1.136 sum -2.654 -27.936 2.370 28.162 Atomic orbital electron populations 1.69678 1.05104 1.25473 1.57871 1.24736 0.95522 0.97636 1.03184 0.86180 0.78601 0.83868 0.77471 1.21778 1.21833 1.20794 1.19233 0.90993 0.84143 1.42460 0.91197 1.42206 1.06045 0.99463 1.89243 1.20617 0.92367 0.84747 0.98498 1.22291 0.92581 0.94004 0.88318 0.92997 1.22464 0.92342 0.85968 1.03464 1.47986 1.45240 1.35145 1.05826 1.20903 0.82210 0.86049 0.83291 1.90806 1.50254 1.56018 1.40555 1.21229 0.98867 0.95241 0.86375 0.87273 1.22355 1.01759 0.88694 1.03097 1.30752 1.11799 1.09182 1.20389 1.06510 0.75156 0.75941 0.76014 1.93629 1.51240 1.80004 1.69682 1.93700 1.45373 1.82003 1.71788 1.54759 1.73374 1.37364 1.18687 1.22154 0.97138 0.95238 0.87775 1.22519 1.02859 0.96846 0.98338 1.22106 0.90052 0.89012 0.99286 1.86496 1.44529 1.53939 1.43409 0.93627 0.77880 0.95623 0.94798 0.89632 0.88792 0.87859 0.86102 0.83546 0.83621 0.71792 0.91013 0.89959 0.89739 0.89554 0.93643 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 2 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.41 5.49 -59.90 -0.33 -19.74 16 10 C 0.17 3.51 5.95 -4.04 -0.02 3.48 16 11 C 0.09 1.52 2.73 -25.77 -0.07 1.45 16 12 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 13 C 0.08 1.07 4.83 -3.83 -0.02 1.05 16 14 N -0.61 -6.19 2.19 -172.47 -0.38 -6.57 16 15 C 0.49 5.64 6.67 -10.98 -0.07 5.56 16 16 O -0.50 -8.31 15.95 5.55 0.09 -8.22 16 17 C 0.10 0.67 2.83 -69.01 -0.20 0.47 16 18 H 0.11 0.44 6.32 -51.93 -0.33 0.11 16 19 C -0.12 -0.47 5.50 -25.39 -0.14 -0.61 16 20 C -0.59 -1.82 7.65 38.40 0.29 -1.53 16 21 S 2.57 21.66 6.47 -107.50 -0.70 20.97 16 22 O -0.96 -10.86 18.14 -57.40 -1.04 -11.90 16 23 O -0.94 -12.30 18.14 -57.40 -1.04 -13.34 16 24 N -1.08 -9.20 6.10 -5.82 -0.04 -9.24 16 25 C 0.10 0.60 5.12 -3.20 -0.02 0.58 16 26 C -0.17 -1.29 5.79 -27.17 -0.16 -1.44 16 27 C 0.07 0.86 6.36 36.42 0.23 1.09 16 28 O -0.37 -6.23 9.20 -26.87 -0.25 -6.48 16 29 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 30 H 0.39 11.03 7.52 -40.82 -0.31 10.72 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.09 1.34 7.35 -51.93 -0.38 0.96 16 35 H 0.10 0.50 7.82 -51.93 -0.41 0.10 16 36 H 0.12 0.08 7.45 -51.93 -0.39 -0.30 16 37 H 0.15 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.15 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.44 3.78 8.96 -40.37 -0.36 3.42 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.27 5.26 -51.93 -0.27 0.00 16 42 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.54 7.40 -51.93 -0.38 0.15 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -42.06 370.02 -9.41 -51.48 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.59 Total: 5.33 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.41 Total: 2.53 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.02 Total: -63.95 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -2.24 Total: -39.94 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 21.66 SS G_CDS: -0.70 Total: 20.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -42.06 -9.41 -51.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202080980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.982 kcal (2) G-P(sol) polarization free energy of solvation -42.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds