Wall clock time and date at job start Wed Apr 1 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48507 * 109.47083 * 269.99990 * 3 2 1 5 5 H 1.48505 * 109.47221 * 29.99791 * 3 2 1 6 6 H 1.48500 * 109.47523 * 149.99621 * 3 2 1 7 7 C 1.38812 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00341 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99502 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99592 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46863 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46725 * 60.00078 * 11 10 9 13 13 C 1.54811 * 109.46689 * 179.97438 * 11 10 9 14 14 N 1.45122 * 109.53581 * 187.88200 * 13 11 10 15 15 C 1.34780 * 118.75354 * 90.71516 * 14 13 11 16 16 O 1.21283 * 120.00251 * 354.91868 * 15 14 13 17 17 C 1.50704 * 119.99698 * 174.91622 * 15 14 13 18 18 H 1.08998 * 108.58171 * 45.66592 * 17 15 14 19 19 C 1.53196 * 108.64643 * 287.66263 * 17 15 14 20 20 C 1.55344 * 106.34678 * 211.21696 * 19 17 15 21 21 S 1.83897 * 99.54443 * 37.18571 * 20 19 17 22 22 O 1.42105 * 111.46809 * 215.82142 * 21 20 19 23 23 O 1.42102 * 111.61591 * 75.80483 * 21 20 19 24 24 N 1.46447 * 108.64326 * 163.66062 * 17 15 14 25 25 C 1.47504 * 122.48697 * 270.73350 * 14 13 11 26 26 C 1.53573 * 111.02401 * 41.60848 * 25 14 13 27 27 C 1.51539 * 109.57920 * 39.98336 * 26 25 14 28 28 O 1.38110 * 109.39967 * 300.12177 * 11 10 9 29 29 H 0.96996 * 120.00117 * 359.97438 * 1 2 3 30 30 H 0.96991 * 120.00266 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47604 * 59.99551 * 10 9 7 32 32 H 1.09009 * 109.46715 * 299.99380 * 10 9 7 33 33 H 1.08997 * 109.45645 * 67.86696 * 13 11 10 34 34 H 1.09001 * 109.44906 * 307.90214 * 13 11 10 35 35 H 1.08997 * 110.10466 * 330.53716 * 19 17 15 36 36 H 1.09002 * 110.10107 * 92.14831 * 19 17 15 37 37 H 1.08997 * 111.49622 * 279.58422 * 20 19 17 38 38 H 1.08998 * 111.38127 * 154.73773 * 20 19 17 39 39 H 0.97000 * 126.08847 * 302.85663 * 24 17 15 40 40 H 1.08997 * 109.16826 * 281.21348 * 25 14 13 41 41 H 1.09001 * 109.12506 * 161.97623 * 25 14 13 42 42 H 1.08997 * 109.45302 * 279.94677 * 26 25 14 43 43 H 1.09005 * 109.43339 * 160.00213 * 26 25 14 44 44 H 1.08991 * 109.59109 * 28.37494 * 27 26 25 45 45 H 1.08999 * 109.58746 * 148.67011 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.4376 -4.7625 -0.8883 13 6 1.8381 -6.1604 0.0026 14 7 0.9076 -7.2582 -0.1846 15 6 0.6434 -7.6776 -1.4379 16 8 1.1068 -7.0817 -2.3872 17 6 -0.2278 -8.8872 -1.6597 18 1 -1.1039 -8.8069 -1.0162 19 6 0.5606 -10.1385 -1.2602 20 6 0.0551 -11.2853 -2.1782 21 16 -0.1856 -10.3429 -3.7389 22 8 -1.3133 -10.8155 -4.4631 23 8 1.0526 -10.0624 -4.3773 24 7 -0.6712 -8.8952 -3.0554 25 6 0.2397 -7.9320 0.9449 26 6 -0.2242 -6.9142 1.9973 27 6 -0.7803 -5.6860 1.3054 28 8 0.2685 -4.7428 1.1285 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7149 -0.8879 33 1 2.3549 -6.2808 0.9547 34 1 2.5664 -6.1592 -0.8084 35 1 1.6269 -9.9751 -1.4160 36 1 0.3675 -10.3855 -0.2162 37 1 -0.8851 -11.7014 -1.8165 38 1 0.8104 -12.0623 -2.2959 39 1 -1.1592 -8.1870 -3.5040 40 1 0.9361 -8.6319 1.4066 41 1 -0.6252 -8.4810 0.5724 42 1 0.6215 -6.6272 2.6222 43 1 -0.9992 -7.3629 2.6188 44 1 -1.1871 -5.9665 0.3340 45 1 -1.5674 -5.2464 1.9181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202080980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:35 Heat of formation + Delta-G solvation = -144.438581 kcal Electronic energy + Delta-G solvation = -29930.288043 eV Core-core repulsion = 25688.955698 eV Total energy + Delta-G solvation = -4241.332345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88008 -39.98429 -38.19584 -37.48048 -36.95027 -36.90994 -36.25638 -34.29862 -32.77931 -32.64040 -30.64147 -28.72559 -27.25264 -26.46646 -24.62185 -23.49619 -22.60441 -22.29208 -20.62906 -20.31100 -19.27318 -18.85909 -18.71284 -17.91215 -17.58129 -17.39003 -16.92517 -16.78232 -16.57701 -16.05878 -15.80251 -15.55509 -15.15511 -14.97373 -14.74787 -14.71965 -14.41591 -14.26074 -13.86886 -13.67415 -13.58563 -13.25966 -13.22024 -13.10630 -13.09163 -12.89647 -12.78502 -12.61959 -12.38210 -12.28162 -12.12919 -11.96397 -11.82328 -11.51446 -11.45994 -11.29192 -10.99525 -10.52996 -10.27116 -9.64274 -9.03009 -7.95902 -5.25738 -0.74801 1.39705 1.45128 1.48444 1.56517 1.56760 1.92777 2.54813 2.63269 2.74519 2.85359 3.24596 3.37314 3.37789 3.57087 3.65028 3.83758 3.92411 4.03282 4.07549 4.12711 4.22889 4.28741 4.36968 4.45812 4.49128 4.54417 4.63909 4.71302 4.74892 4.79200 4.87940 4.90241 4.98480 5.10182 5.18201 5.25715 5.45236 5.53118 5.95833 6.24709 6.28275 6.77055 7.08934 7.30997 8.05516 8.30663 9.28019 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.002566 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.937185 B =10909.998277 C =11716.191021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.161 3.839 11 C 0.105 3.895 12 H 0.015 0.985 13 C 0.095 3.905 14 N -0.603 5.603 15 C 0.482 3.518 16 O -0.571 6.571 17 C 0.094 3.906 18 H 0.152 0.848 19 C -0.124 4.124 20 C -0.533 4.533 21 S 2.545 3.455 22 O -0.998 6.998 23 O -1.006 7.006 24 N -1.086 6.086 25 C 0.089 3.911 26 C -0.158 4.158 27 C 0.060 3.940 28 O -0.398 6.398 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.177 0.823 39 H 0.435 0.565 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.042 0.958 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -32.647 6.534 33.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.383 5.383 10 C 0.034 3.966 11 C 0.045 3.955 12 H 0.033 0.967 13 C -0.030 4.030 14 N -0.336 5.336 15 C 0.269 3.731 16 O -0.449 6.449 17 C -0.018 4.018 18 H 0.169 0.831 19 C -0.163 4.163 20 C -0.669 4.669 21 S 2.645 3.355 22 O -0.988 6.988 23 O -0.995 6.995 24 N -0.849 5.849 25 C -0.031 4.031 26 C -0.195 4.195 27 C -0.016 4.016 28 O -0.317 6.317 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.195 0.805 37 H 0.206 0.794 38 H 0.195 0.805 39 H 0.274 0.726 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.060 0.940 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.527 -32.401 5.167 32.907 hybrid contribution -0.206 2.020 -0.406 2.070 sum -2.733 -30.381 4.761 30.873 Atomic orbital electron populations 1.69852 1.06776 1.26093 1.59409 1.25656 0.96491 1.01344 1.03535 0.85056 0.77734 0.79008 0.77430 1.21480 1.21859 1.19128 1.19686 0.91561 0.85308 1.41470 0.90486 1.42415 1.05627 1.00936 1.89278 1.20772 0.93264 0.84311 0.98251 1.21866 0.91749 0.94786 0.87131 0.96661 1.22078 0.92129 0.84992 1.03785 1.48102 1.44494 1.33928 1.07055 1.21895 0.81678 0.86859 0.82673 1.90784 1.52935 1.58415 1.42732 1.21683 0.99626 0.94468 0.86051 0.83061 1.22659 1.00806 0.86827 1.05988 1.30546 1.14925 1.08347 1.13102 1.07010 0.73411 0.76605 0.78468 1.93566 1.52109 1.80449 1.72702 1.93620 1.47199 1.83326 1.75360 1.54809 1.72870 1.37439 1.19810 1.22656 0.99297 0.95004 0.86110 1.22446 1.03410 0.95070 0.98623 1.22449 0.89113 0.90265 0.99784 1.86406 1.45891 1.56684 1.42695 0.93988 0.79478 0.94815 0.95284 0.87394 0.90704 0.88863 0.80547 0.79387 0.80548 0.72597 0.87008 0.86061 0.90792 0.85703 0.93957 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.48 13.06 21.65 0.28 -62.20 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.98 48.12 29.55 68.60 2.03 50.15 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -14.83 9.99 84.03 0.84 -13.99 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.74 -41.36 5.49 -343.43 -1.88 -43.25 16 10 C 0.16 7.12 5.95 86.38 0.51 7.63 16 11 C 0.10 3.78 2.73 31.21 0.09 3.87 16 12 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 13 C 0.10 2.47 4.83 87.26 0.42 2.89 16 14 N -0.60 -10.89 2.19 -817.95 -1.79 -12.68 16 15 C 0.48 10.56 6.67 87.66 0.58 11.15 16 16 O -0.57 -20.02 15.95 -3.04 -0.05 -20.06 16 17 C 0.09 1.00 2.83 44.32 0.13 1.12 16 18 H 0.15 0.32 6.32 -2.39 -0.02 0.31 16 19 C -0.12 -0.25 5.50 31.47 0.17 -0.08 16 20 C -0.53 -0.30 7.65 72.79 0.56 0.25 16 21 S 2.54 42.08 6.47 -56.49 -0.37 41.71 16 22 O -1.00 -23.22 18.14 -127.79 -2.32 -25.54 16 23 O -1.01 -28.24 18.14 -127.79 -2.32 -30.56 16 24 N -1.09 -18.24 6.10 -172.34 -1.05 -19.29 16 25 C 0.09 0.57 5.12 86.38 0.44 1.01 16 26 C -0.16 -1.74 5.79 30.31 0.18 -1.56 16 27 C 0.06 1.34 6.36 71.50 0.45 1.80 16 28 O -0.40 -13.77 9.20 -119.06 -1.10 -14.87 16 29 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.37 22.48 7.52 -92.71 -0.70 21.78 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.11 2.31 8.11 -2.39 -0.02 2.29 16 34 H 0.07 2.24 7.35 -2.39 -0.02 2.22 16 35 H 0.09 0.51 7.82 -2.39 -0.02 0.49 16 36 H 0.18 -1.45 7.45 -2.39 -0.02 -1.46 16 37 H 0.19 -1.20 8.14 -2.39 -0.02 -1.22 16 38 H 0.18 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.43 8.13 8.96 -93.00 -0.83 7.29 16 40 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.12 -0.14 5.26 -2.39 -0.01 -0.16 16 42 H 0.07 1.04 8.02 -2.39 -0.02 1.02 16 43 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.04 0.96 7.40 -2.39 -0.02 0.94 16 45 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -103.25 370.02 -4.22 -107.47 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.50 Total: 19.29 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 4.84 Total: 9.83 kcal Atomic # 7 Polarization: -132.98 SS G_CDS: -4.44 Total: -137.42 kcal Atomic # 8 Polarization: -85.25 SS G_CDS: -5.78 Total: -91.03 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 16 Polarization: 42.08 SS G_CDS: -0.37 Total: 41.71 kcal Total: -103.25 -4.22 -107.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202080980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.966 kcal (2) G-P(sol) polarization free energy of solvation -103.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds