Wall clock time and date at job start Wed Apr 1 2020 04:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99444 * 2 1 4 4 H 1.48500 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47047 * 299.99591 * 3 2 1 6 6 H 1.48500 * 109.47097 * 59.99784 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00006 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47342 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49395 * 56.64129 * 11 10 9 13 13 C 1.53193 * 109.52117 * 296.56524 * 11 10 9 14 14 N 1.46921 * 108.77812 * 294.66130 * 13 11 10 15 15 C 1.34779 * 120.63330 * 126.36775 * 14 13 11 16 16 O 1.21687 * 119.99586 * 4.41682 * 15 14 13 17 17 C 1.46721 * 120.00255 * 184.41325 * 15 14 13 18 18 C 1.36339 * 126.64014 * 173.34387 * 17 15 14 19 19 N 1.33693 * 107.45012 * 179.97438 * 18 17 15 20 20 C 1.30620 * 108.99473 * 359.97438 * 19 18 17 21 21 O 1.33657 * 109.15513 * 359.75764 * 20 19 18 22 22 C 1.46933 * 118.74031 * 306.39914 * 14 13 11 23 23 C 1.53191 * 108.77534 * 53.60371 * 22 14 13 24 24 C 1.53036 * 109.50227 * 176.71001 * 11 10 9 25 25 H 1.08997 * 109.46403 * 178.63857 * 24 11 10 26 26 C 1.53008 * 109.45761 * 298.61123 * 24 11 10 27 27 F 1.39906 * 109.46624 * 66.35128 * 26 24 11 28 28 F 1.39901 * 109.47188 * 186.34878 * 26 24 11 29 29 F 1.39894 * 109.47250 * 306.35071 * 26 24 11 30 30 H 0.96997 * 120.00509 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00019 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47165 * 59.99918 * 10 9 7 33 33 H 1.09004 * 109.47326 * 299.99789 * 10 9 7 34 34 H 1.09002 * 109.59151 * 54.45123 * 13 11 10 35 35 H 1.09006 * 109.58448 * 174.87528 * 13 11 10 36 36 H 1.07992 * 126.28043 * 359.95139 * 18 17 15 37 37 H 1.08004 * 125.42400 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.58470 * 293.81576 * 22 14 13 39 39 H 1.09002 * 109.70258 * 173.46280 * 22 14 13 40 40 H 1.09000 * 109.49489 * 185.41963 * 23 22 14 41 41 H 1.08994 * 109.49812 * 65.31881 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.3980 -4.7293 -0.8568 13 6 0.2412 -4.7890 1.2929 14 7 1.1364 -5.0418 2.4301 15 6 1.1806 -4.1883 3.4723 16 8 0.4181 -3.2409 3.5156 17 6 2.1480 -4.4015 4.5547 18 6 2.3968 -3.5629 5.6004 19 7 3.3444 -4.1310 6.3532 20 6 3.6843 -5.2732 5.8184 21 8 2.9613 -5.4718 4.7120 22 6 1.9831 -6.2425 2.4095 23 6 2.7865 -6.2568 1.1052 24 6 1.8269 -6.1439 -0.0816 25 1 1.1194 -6.9727 -0.0567 26 6 2.6233 -6.1925 -1.3872 27 9 3.6275 -5.2188 -1.3573 28 9 3.2040 -7.4570 -1.5323 29 9 1.7668 -5.9461 -2.4654 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6850 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8895 34 1 -0.2255 -3.8104 1.4058 35 1 -0.5279 -5.5606 1.2547 36 1 1.9168 -2.6136 5.7865 37 1 4.4278 -5.9514 6.2105 38 1 1.3562 -7.1326 2.4623 39 1 2.6657 -6.2254 3.2591 40 1 3.3462 -7.1894 1.0330 41 1 3.4785 -5.4148 1.0950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264037789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:25 Heat of formation + Delta-G solvation = -124.459090 kcal Electronic energy + Delta-G solvation = -32780.136568 eV Core-core repulsion = 27862.369907 eV Total energy + Delta-G solvation = -4917.766661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08985 -47.57838 -47.49010 -43.59515 -40.22337 -37.92174 -35.34189 -34.55490 -33.43537 -31.88544 -30.66127 -29.89153 -27.51776 -25.93907 -24.22771 -23.54166 -23.11125 -22.77590 -22.05404 -20.80957 -19.22991 -18.36795 -18.32299 -17.92686 -17.55988 -16.99759 -16.87424 -16.73844 -15.87712 -15.27404 -15.05233 -14.55019 -14.51648 -14.31385 -14.23260 -14.13832 -14.01931 -13.89990 -13.70168 -13.62957 -13.50841 -13.12988 -13.00218 -12.77947 -12.52624 -12.39050 -11.82850 -11.63828 -11.36281 -11.04423 -10.95346 -10.79229 -10.69852 -10.56357 -10.43182 -10.09317 -9.95491 -9.63032 -9.22413 -8.78473 -8.65411 -6.82980 -5.68601 -2.96573 0.77227 2.23766 2.36237 2.77122 2.94646 3.22146 3.48755 3.53994 3.56238 3.79904 3.94968 3.97196 4.04250 4.44531 4.60164 4.64050 4.75509 4.85168 4.87949 4.97808 5.08506 5.16290 5.19319 5.34318 5.45981 5.49461 5.63923 5.70893 5.80399 5.81929 6.02934 6.07118 6.16113 6.39232 6.46201 6.72464 6.75999 7.21447 7.43796 7.77039 8.10234 8.49180 9.60861 10.16435 10.50839 11.54303 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.006847 B = 0.006120 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4088.164751 B = 4574.039862 C = 7553.293416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.067 0.933 9 N -0.725 5.725 10 C 0.142 3.858 11 C -0.113 4.113 12 H 0.100 0.900 13 C 0.126 3.874 14 N -0.599 5.599 15 C 0.605 3.395 16 O -0.485 6.485 17 C -0.095 4.095 18 C 0.050 3.950 19 N -0.492 5.492 20 C 0.182 3.818 21 O -0.189 6.189 22 C 0.098 3.902 23 C -0.137 4.137 24 C -0.124 4.124 25 H 0.114 0.886 26 C 0.455 3.545 27 F -0.170 7.170 28 F -0.190 7.190 29 F -0.180 7.180 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.197 0.803 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -20.489 6.283 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.085 0.915 9 N -0.370 5.370 10 C 0.014 3.986 11 C -0.133 4.133 12 H 0.118 0.882 13 C 0.005 3.995 14 N -0.332 5.332 15 C 0.391 3.609 16 O -0.359 6.359 17 C -0.150 4.150 18 C -0.092 4.092 19 N -0.220 5.220 20 C -0.042 4.042 21 O -0.076 6.076 22 C -0.024 4.024 23 C -0.175 4.175 24 C -0.144 4.144 25 H 0.132 0.868 26 C 0.401 3.599 27 F -0.151 7.151 28 F -0.172 7.172 29 F -0.162 7.162 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.214 0.786 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.245 -19.651 6.785 21.440 hybrid contribution 0.251 0.530 -0.874 1.053 sum 5.496 -19.121 5.910 20.755 Atomic orbital electron populations 1.69654 1.05007 1.25399 1.57727 1.24683 0.95462 0.97485 1.02992 0.86175 0.78780 0.84450 0.77145 1.20693 1.21924 1.21873 1.19155 0.90832 0.84050 1.42603 0.91478 1.42247 1.05610 0.99643 1.89485 1.21154 0.93001 0.85102 0.99313 1.21845 0.98917 0.93042 0.99478 0.88223 1.21697 0.90697 1.04584 0.82553 1.47812 1.42131 1.23755 1.19547 1.16451 0.81856 0.82527 0.80097 1.91010 1.39502 1.28900 1.76486 1.23408 0.99777 0.89480 1.02326 1.23630 0.94797 1.00897 0.89891 1.70451 1.13803 1.07626 1.30104 1.28478 0.96542 0.95828 0.83386 1.84578 1.42289 1.40393 1.40338 1.22164 0.94092 0.87441 0.98707 1.22051 0.98031 1.04478 0.92945 1.22473 0.98520 1.02612 0.90778 0.86827 1.20572 0.78886 0.73135 0.87338 1.93150 1.62894 1.62389 1.96701 1.93152 1.85774 1.41725 1.96510 1.93187 1.70101 1.94051 1.58818 0.93642 0.78315 0.96177 0.94142 0.86513 0.91297 0.78564 0.73174 0.90744 0.87000 0.89556 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 23.22 29.55 -169.99 -5.02 18.20 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.33 5.27 -59.91 -0.32 -18.64 16 10 C 0.14 2.79 4.55 -4.04 -0.02 2.77 16 11 C -0.11 -1.67 2.08 -90.50 -0.19 -1.86 16 12 H 0.10 1.49 7.61 -51.93 -0.40 1.10 16 13 C 0.13 1.84 5.73 -3.71 -0.02 1.82 16 14 N -0.60 -8.29 2.36 -174.29 -0.41 -8.70 16 15 C 0.61 10.03 7.66 -12.83 -0.10 9.93 16 16 O -0.49 -10.17 16.33 5.20 0.08 -10.08 16 17 C -0.10 -1.32 6.88 -36.84 -0.25 -1.58 16 18 C 0.05 0.69 11.67 -17.43 -0.20 0.49 16 19 N -0.49 -6.06 11.26 -14.67 -0.17 -6.23 16 20 C 0.18 1.57 13.21 52.25 0.69 2.26 16 21 O -0.19 -1.95 7.27 4.44 0.03 -1.92 16 22 C 0.10 0.96 6.32 -3.71 -0.02 0.94 16 23 C -0.14 -1.37 4.75 -26.61 -0.13 -1.50 16 24 C -0.12 -1.38 2.02 -90.57 -0.18 -1.56 16 25 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 26 C 0.45 5.82 2.60 37.16 0.10 5.91 16 27 F -0.17 -2.57 13.32 2.25 0.03 -2.54 16 28 F -0.19 -2.22 17.02 2.25 0.04 -2.19 16 29 F -0.18 -2.55 16.53 2.25 0.04 -2.52 16 30 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.38 10.15 6.75 -40.82 -0.28 9.87 16 32 H 0.02 0.42 6.07 -51.93 -0.32 0.10 16 33 H 0.04 0.84 5.23 -51.93 -0.27 0.57 16 34 H 0.12 2.20 5.86 -51.93 -0.30 1.89 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.20 2.66 8.06 -52.49 -0.42 2.24 16 37 H 0.25 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.11 1.04 3.79 -55.02 -0.21 0.83 16 40 H 0.09 0.65 7.94 -51.93 -0.41 0.24 16 41 H 0.09 1.12 5.97 -51.93 -0.31 0.81 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -35.70 342.18 -4.54 -40.24 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.15 Total: 6.85 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.58 Total: 10.35 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.17 Total: -61.55 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.12 Total: -12.00 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.70 -4.54 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264037789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.222 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds