Wall clock time and date at job start Wed Apr 1 2020 04:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99444 * 2 1 4 4 H 1.48500 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47047 * 299.99591 * 3 2 1 6 6 H 1.48500 * 109.47097 * 59.99784 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00006 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47342 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49395 * 56.64129 * 11 10 9 13 13 C 1.53193 * 109.52117 * 296.56524 * 11 10 9 14 14 N 1.46921 * 108.77812 * 294.66130 * 13 11 10 15 15 C 1.34779 * 120.63330 * 126.36775 * 14 13 11 16 16 O 1.21687 * 119.99586 * 4.41682 * 15 14 13 17 17 C 1.46721 * 120.00255 * 184.41325 * 15 14 13 18 18 C 1.36339 * 126.64014 * 173.34387 * 17 15 14 19 19 N 1.33693 * 107.45012 * 179.97438 * 18 17 15 20 20 C 1.30620 * 108.99473 * 359.97438 * 19 18 17 21 21 O 1.33657 * 109.15513 * 359.75764 * 20 19 18 22 22 C 1.46933 * 118.74031 * 306.39914 * 14 13 11 23 23 C 1.53191 * 108.77534 * 53.60371 * 22 14 13 24 24 C 1.53036 * 109.50227 * 176.71001 * 11 10 9 25 25 H 1.08997 * 109.46403 * 178.63857 * 24 11 10 26 26 C 1.53008 * 109.45761 * 298.61123 * 24 11 10 27 27 F 1.39906 * 109.46624 * 66.35128 * 26 24 11 28 28 F 1.39901 * 109.47188 * 186.34878 * 26 24 11 29 29 F 1.39894 * 109.47250 * 306.35071 * 26 24 11 30 30 H 0.96997 * 120.00509 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00019 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47165 * 59.99918 * 10 9 7 33 33 H 1.09004 * 109.47326 * 299.99789 * 10 9 7 34 34 H 1.09002 * 109.59151 * 54.45123 * 13 11 10 35 35 H 1.09006 * 109.58448 * 174.87528 * 13 11 10 36 36 H 1.07992 * 126.28043 * 359.95139 * 18 17 15 37 37 H 1.08004 * 125.42400 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.58470 * 293.81576 * 22 14 13 39 39 H 1.09002 * 109.70258 * 173.46280 * 22 14 13 40 40 H 1.09000 * 109.49489 * 185.41963 * 23 22 14 41 41 H 1.08994 * 109.49812 * 65.31881 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.3980 -4.7293 -0.8568 13 6 0.2412 -4.7890 1.2929 14 7 1.1364 -5.0418 2.4301 15 6 1.1806 -4.1883 3.4723 16 8 0.4181 -3.2409 3.5156 17 6 2.1480 -4.4015 4.5547 18 6 2.3968 -3.5629 5.6004 19 7 3.3444 -4.1310 6.3532 20 6 3.6843 -5.2732 5.8184 21 8 2.9613 -5.4718 4.7120 22 6 1.9831 -6.2425 2.4095 23 6 2.7865 -6.2568 1.1052 24 6 1.8269 -6.1439 -0.0816 25 1 1.1194 -6.9727 -0.0567 26 6 2.6233 -6.1925 -1.3872 27 9 3.6275 -5.2188 -1.3573 28 9 3.2040 -7.4570 -1.5323 29 9 1.7668 -5.9461 -2.4654 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.6850 -3.7144 0.8905 33 1 2.6849 -3.7145 -0.8895 34 1 -0.2255 -3.8104 1.4058 35 1 -0.5279 -5.5606 1.2547 36 1 1.9168 -2.6136 5.7865 37 1 4.4278 -5.9514 6.2105 38 1 1.3562 -7.1326 2.4623 39 1 2.6657 -6.2254 3.2591 40 1 3.3462 -7.1894 1.0330 41 1 3.4785 -5.4148 1.0950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264037789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:24 Heat of formation + Delta-G solvation = -152.202079 kcal Electronic energy + Delta-G solvation = -32781.339594 eV Core-core repulsion = 27862.369907 eV Total energy + Delta-G solvation = -4918.969687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.12846 -48.61431 -48.54418 -44.48985 -41.36349 -39.16717 -36.59035 -35.97216 -34.73073 -33.40078 -31.97618 -31.22912 -28.61997 -27.54580 -25.51461 -24.79448 -24.26228 -23.75200 -23.35688 -21.89275 -20.39546 -19.47883 -19.38381 -19.21863 -18.75747 -18.40403 -17.86946 -17.73788 -17.12033 -16.65924 -16.42420 -15.89176 -15.67399 -15.55018 -15.37118 -15.25199 -15.18399 -15.01822 -14.90838 -14.85359 -14.69859 -14.35931 -14.22621 -13.96805 -13.80996 -13.74482 -13.08577 -12.96226 -12.79113 -12.56538 -12.33778 -12.21284 -12.09211 -11.99981 -11.80488 -11.57784 -11.46333 -11.33026 -10.90715 -10.26441 -9.72282 -8.94912 -7.95235 -5.21995 -0.20084 1.28122 1.41150 1.43148 1.45646 1.52088 1.78126 1.90704 2.11738 2.52804 2.81630 2.94921 3.06873 3.24069 3.38473 3.48753 3.64751 3.69578 3.87049 3.90154 3.94308 4.05833 4.24294 4.27950 4.32635 4.45840 4.53410 4.57811 4.66326 4.75213 4.87364 4.95839 5.07174 5.11382 5.20865 5.32602 5.45213 5.50669 6.14396 6.26862 6.51950 6.93101 7.33381 8.09919 8.31917 9.28437 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.006847 B = 0.006120 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4088.164751 B = 4574.039862 C = 7553.293416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.072 4.072 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.066 0.934 9 N -0.736 5.736 10 C 0.144 3.856 11 C -0.104 4.104 12 H 0.096 0.904 13 C 0.128 3.872 14 N -0.594 5.594 15 C 0.597 3.403 16 O -0.551 6.551 17 C -0.114 4.114 18 C 0.041 3.959 19 N -0.526 5.526 20 C 0.221 3.779 21 O -0.177 6.177 22 C 0.095 3.905 23 C -0.133 4.133 24 C -0.113 4.113 25 H 0.158 0.842 26 C 0.453 3.547 27 F -0.188 7.188 28 F -0.179 7.179 29 F -0.191 7.191 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.013 0.987 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.184 0.816 37 H 0.313 0.687 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -24.077 6.853 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.379 5.379 10 C 0.017 3.983 11 C -0.124 4.124 12 H 0.114 0.886 13 C 0.006 3.994 14 N -0.326 5.326 15 C 0.384 3.616 16 O -0.430 6.430 17 C -0.169 4.169 18 C -0.101 4.101 19 N -0.254 5.254 20 C -0.003 4.003 21 O -0.064 6.064 22 C -0.025 4.025 23 C -0.171 4.171 24 C -0.132 4.132 25 H 0.176 0.824 26 C 0.399 3.601 27 F -0.170 7.170 28 F -0.160 7.160 29 F -0.172 7.172 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.201 0.799 37 H 0.328 0.672 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.152 -23.308 7.338 25.461 hybrid contribution -0.186 1.496 -1.015 1.818 sum 6.966 -21.812 6.323 23.754 Atomic orbital electron populations 1.69807 1.06413 1.25759 1.59486 1.25467 0.96346 1.00772 1.03832 0.85190 0.78185 0.80379 0.76761 1.19362 1.21555 1.22272 1.19491 0.90975 0.85601 1.41035 0.91646 1.42425 1.05365 1.00868 1.89198 1.21251 0.93797 0.84863 0.98346 1.21677 0.98008 0.93170 0.99519 0.88550 1.21598 0.91635 1.03484 0.82680 1.47955 1.42007 1.24351 1.18252 1.16829 0.81680 0.82011 0.81068 1.90967 1.42222 1.31598 1.78172 1.22785 1.01049 0.90989 1.02077 1.23609 0.95265 1.00851 0.90392 1.70479 1.14402 1.09535 1.30965 1.29844 0.94622 0.94704 0.81097 1.84572 1.41938 1.38891 1.41034 1.22521 0.94361 0.86749 0.98849 1.22079 0.97472 1.05292 0.92256 1.22518 0.98999 1.01404 0.90296 0.82428 1.20823 0.78563 0.73065 0.87683 1.93114 1.63727 1.63350 1.96777 1.93173 1.85608 1.40743 1.96488 1.93171 1.70353 1.94163 1.59529 0.94133 0.79448 0.96884 0.94706 0.91447 0.87151 0.79900 0.67235 0.86749 0.86191 0.85744 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.96 13.06 21.65 0.28 -61.67 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 49.06 29.55 68.60 2.03 51.09 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 7 C -0.24 -14.15 9.99 84.03 0.84 -13.32 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -38.79 5.27 -343.45 -1.81 -40.60 16 10 C 0.14 5.77 4.55 86.38 0.39 6.17 16 11 C -0.10 -2.98 2.08 -10.72 -0.02 -3.00 16 12 H 0.10 2.84 7.61 -2.39 -0.02 2.83 16 13 C 0.13 3.69 5.73 86.36 0.50 4.18 16 14 N -0.59 -15.87 2.36 -823.54 -1.94 -17.81 16 15 C 0.60 20.40 7.66 86.46 0.66 21.06 16 16 O -0.55 -24.94 16.33 -4.31 -0.07 -25.01 16 17 C -0.11 -3.15 6.88 24.04 0.17 -2.98 16 18 C 0.04 1.16 11.67 83.97 0.98 2.14 16 19 N -0.53 -12.18 11.26 -315.11 -3.55 -15.73 16 20 C 0.22 2.96 13.21 130.42 1.72 4.68 16 21 O -0.18 -3.12 7.27 -7.02 -0.05 -3.17 16 22 C 0.10 1.50 6.32 86.36 0.55 2.05 16 23 C -0.13 -2.16 4.75 30.67 0.15 -2.02 16 24 C -0.11 -2.13 2.02 -10.76 -0.02 -2.15 16 25 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 26 C 0.45 10.49 2.60 71.98 0.19 10.67 16 27 F -0.19 -5.50 13.32 44.97 0.60 -4.90 16 28 F -0.18 -3.54 17.02 44.97 0.77 -2.78 16 29 F -0.19 -5.10 16.53 44.97 0.74 -4.36 16 30 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.37 20.92 6.75 -92.71 -0.63 20.29 16 32 H 0.01 0.56 6.07 -2.38 -0.01 0.54 16 33 H 0.04 1.47 5.23 -2.39 -0.01 1.46 16 34 H 0.07 2.69 5.86 -2.39 -0.01 2.68 16 35 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.18 5.48 8.06 -2.91 -0.02 5.46 16 37 H 0.31 -0.23 8.06 -2.91 -0.02 -0.25 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 1.75 3.79 -51.31 -0.19 1.56 16 40 H 0.12 1.17 7.94 -2.39 -0.02 1.15 16 41 H 0.06 1.42 5.97 -2.39 -0.01 1.41 16 Total: -1.00 -84.88 342.18 3.87 -81.01 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.31 Total: 20.33 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 6.56 Total: 23.60 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -7.02 Total: -135.81 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.12 Total: -28.18 kcal Atomic # 9 Polarization: -14.14 SS G_CDS: 2.11 Total: -12.03 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -84.88 3.87 -81.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264037789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.193 kcal (2) G-P(sol) polarization free energy of solvation -84.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds