Wall clock time and date at job start Wed Apr 1 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46838 * 180.02562 * 10 9 7 12 12 C 1.46937 * 124.34799 * 90.00272 * 11 10 9 13 13 C 1.53718 * 105.32832 * 196.20084 * 12 11 10 14 14 C 1.53888 * 102.57823 * 335.41521 * 13 12 11 15 15 C 1.34513 * 124.34735 * 269.70409 * 11 10 9 16 16 O 1.21287 * 124.94430 * 359.78350 * 15 11 10 17 17 C 1.51122 * 111.42574 * 216.19206 * 13 12 11 18 18 O 1.42627 * 108.37252 * 327.67818 * 17 13 12 19 19 C 1.37899 * 119.53543 * 273.94745 * 18 17 13 20 20 C 1.54658 * 109.82804 * 63.63918 * 19 18 17 21 21 N 1.45114 * 109.56950 * 291.61645 * 20 19 18 22 22 S 1.65609 * 118.88400 * 269.07689 * 21 20 19 23 23 N 1.65603 * 107.21794 * 269.98229 * 22 21 20 24 24 O 1.42091 * 106.39925 * 23.52166 * 22 21 20 25 25 O 1.42098 * 106.39959 * 156.44157 * 22 21 20 26 26 C 1.47561 * 122.23354 * 89.05872 * 21 20 19 27 27 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 29 29 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 30 30 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 31 31 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 32 32 H 1.08995 * 110.27514 * 315.15948 * 12 11 10 33 33 H 1.08999 * 110.27487 * 77.24142 * 12 11 10 34 34 H 1.09001 * 110.51919 * 142.71661 * 14 13 12 35 35 H 1.08998 * 110.52189 * 265.31345 * 14 13 12 36 36 H 1.09001 * 109.68522 * 87.38280 * 17 13 12 37 37 H 1.08999 * 109.68516 * 207.94941 * 17 13 12 38 38 H 1.09000 * 109.41032 * 303.52910 * 19 18 17 39 39 H 1.09003 * 109.41179 * 183.74662 * 19 18 17 40 40 H 1.09004 * 109.45196 * 171.58943 * 20 19 18 41 41 H 1.08999 * 109.45602 * 51.64874 * 20 19 18 42 42 H 0.96993 * 119.99964 * 150.00157 * 23 22 21 43 43 H 0.97003 * 119.99822 * 329.99904 * 23 22 21 44 44 H 1.08998 * 109.20675 * 198.22003 * 26 21 20 45 45 H 1.08996 * 109.20668 * 78.90868 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4866 -2.6365 0.0011 12 6 6.3147 -2.6369 1.2149 13 6 7.7197 -2.2231 0.7485 14 6 7.7142 -2.6316 -0.7352 15 6 6.2465 -2.6418 -1.1088 16 8 5.8185 -2.6510 -2.2437 17 6 8.7948 -2.9563 1.5169 18 8 8.3188 -3.1938 2.8403 19 6 8.4817 -2.2229 3.8059 20 6 7.6813 -0.9577 3.4180 21 7 8.2850 -0.3388 2.2525 22 16 9.4479 0.8193 2.4739 23 7 8.6746 2.2814 2.5543 24 8 10.0043 0.5883 3.7608 25 8 10.2243 0.8408 1.2839 26 6 7.8982 -0.7067 0.8769 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 -0.8894 29 1 3.8746 -0.6807 0.8905 30 1 3.6580 -3.1505 0.8896 31 1 3.6587 -3.1500 -0.8904 32 1 5.9286 -1.9163 1.9358 33 1 6.3411 -3.6343 1.6538 34 1 8.2586 -1.9018 -1.3344 35 1 8.1455 -3.6248 -0.8596 36 1 9.0117 -3.9065 1.0289 37 1 9.6984 -2.3479 1.5553 38 1 9.5387 -1.9708 3.8913 39 1 8.1218 -2.6000 4.7632 40 1 7.6911 -0.2528 4.2494 41 1 6.6522 -1.2350 3.1897 42 1 9.0513 3.0007 3.0849 43 1 7.8449 2.4185 2.0708 44 1 8.6741 -0.3771 0.1859 45 1 6.9602 -0.2125 0.6238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275937462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:00 Heat of formation + Delta-G solvation = -138.169550 kcal Electronic energy + Delta-G solvation = -31019.655774 eV Core-core repulsion = 26778.595275 eV Total energy + Delta-G solvation = -4241.060499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24423 -39.13111 -37.59552 -36.46844 -36.18666 -35.72569 -34.53129 -33.50211 -32.75986 -30.74016 -29.18857 -27.91299 -27.03876 -25.98080 -24.21331 -22.83915 -21.10484 -20.14426 -19.74716 -19.14642 -18.59447 -17.89212 -17.39312 -17.13102 -16.90325 -16.46785 -16.15030 -15.64338 -15.55608 -15.29335 -15.06546 -14.42449 -14.29040 -14.10168 -13.59122 -13.39112 -13.11187 -12.97240 -12.84961 -12.73867 -12.62716 -12.50310 -12.45612 -12.41191 -12.09570 -11.76208 -11.65420 -11.45538 -11.21075 -11.07081 -10.83218 -10.77608 -10.49440 -10.10207 -10.04749 -9.96785 -9.55626 -9.38154 -9.27119 -8.62975 -8.22069 -6.12985 -4.12020 0.20810 2.46830 2.87174 3.16116 3.19560 3.26967 3.29906 3.32952 3.49934 4.00782 4.04458 4.21430 4.31851 4.36266 4.41548 4.65405 4.72225 4.87216 4.96098 4.98554 5.18435 5.20937 5.26507 5.37132 5.42789 5.46295 5.55496 5.56683 5.60984 5.73154 5.80775 5.85340 5.91635 6.10349 6.26218 6.52904 6.69987 6.74367 7.07044 7.23796 7.27218 7.56683 7.68383 8.40766 8.51078 8.90650 9.48542 11.00270 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.004301 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.206543 B = 6508.539974 C = 7731.567919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.022 4.022 10 C 0.136 3.864 11 N -0.615 5.615 12 C 0.119 3.881 13 C -0.113 4.113 14 C -0.143 4.143 15 C 0.511 3.489 16 O -0.531 6.531 17 C 0.093 3.907 18 O -0.379 6.379 19 C 0.057 3.943 20 C 0.070 3.930 21 N -0.999 5.999 22 S 2.788 3.212 23 N -1.261 6.261 24 O -0.979 6.979 25 O -0.979 6.979 26 C 0.116 3.884 27 H 0.264 0.736 28 H 0.020 0.980 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.419 0.581 43 H 0.418 0.582 44 H 0.105 0.895 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.491 -0.919 9.114 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.061 4.061 10 C 0.016 3.984 11 N -0.348 5.348 12 C -0.004 4.004 13 C -0.115 4.115 14 C -0.184 4.184 15 C 0.297 3.703 16 O -0.408 6.408 17 C 0.016 3.984 18 O -0.297 6.297 19 C -0.022 4.022 20 C -0.055 4.055 21 N -0.840 5.840 22 S 2.793 3.207 23 N -0.934 5.934 24 O -0.962 6.962 25 O -0.962 6.962 26 C -0.008 4.008 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.248 0.752 43 H 0.245 0.755 44 H 0.123 0.877 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.955 -1.289 8.627 23.624 hybrid contribution -0.289 1.889 0.055 1.912 sum 21.665 0.601 8.681 23.347 Atomic orbital electron populations 1.69900 1.06254 1.26987 1.50671 1.24974 0.94696 0.99063 0.94425 0.86784 0.80538 0.83774 0.78223 1.20396 1.21257 1.19105 1.20960 0.88888 0.94731 1.51387 0.90763 1.19878 0.97352 0.92326 0.96513 1.21580 0.74345 1.00089 1.02352 1.48700 1.07638 1.72246 1.06248 1.22102 0.87586 1.02841 0.87868 1.21874 0.97728 0.95427 0.96506 1.22387 0.96571 1.04891 0.94504 1.20724 0.88520 0.76191 0.84861 1.90737 1.78427 1.50566 1.21065 1.22232 0.94085 1.00246 0.81844 1.86374 1.81568 1.42913 1.18823 1.22577 0.99364 0.88535 0.91748 1.22461 0.99866 0.96653 0.86551 1.57506 1.59864 1.54695 1.11922 1.01851 0.72652 0.72550 0.73606 1.53544 1.40988 1.32606 1.66308 1.93630 1.76321 1.84752 1.41508 1.93638 1.66732 1.86333 1.49469 1.21936 1.02871 0.94978 0.81021 0.92610 0.96165 0.97176 0.90975 0.90431 0.89952 0.89743 0.87693 0.87265 0.88036 0.92367 0.93172 0.87184 0.89045 0.88137 0.75158 0.75521 0.87726 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.52 4.37 -27.88 -0.12 -0.64 16 10 C 0.14 2.63 5.88 -4.04 -0.02 2.60 16 11 N -0.61 -9.71 2.94 -172.65 -0.51 -10.22 16 12 C 0.12 1.39 5.15 -3.43 -0.02 1.37 16 13 C -0.11 -1.09 0.60 -154.50 -0.09 -1.18 16 14 C -0.14 -1.52 5.94 -27.05 -0.16 -1.68 16 15 C 0.51 8.32 8.04 -10.73 -0.09 8.23 16 16 O -0.53 -11.16 17.59 5.55 0.10 -11.06 16 17 C 0.09 0.76 5.73 36.21 0.21 0.97 16 18 O -0.38 -3.37 8.49 -26.13 -0.22 -3.60 16 19 C 0.06 0.45 6.77 38.03 0.26 0.71 16 20 C 0.07 0.55 5.27 -3.91 -0.02 0.53 16 21 N -1.00 -8.65 2.62 -113.50 -0.30 -8.94 16 22 S 2.79 26.06 6.59 -107.50 -0.71 25.35 16 23 N -1.26 -8.40 9.58 60.35 0.58 -7.82 16 24 O -0.98 -11.20 16.57 -57.17 -0.95 -12.15 16 25 O -0.98 -12.11 16.54 -57.17 -0.95 -13.06 16 26 C 0.12 1.13 5.10 -3.35 -0.02 1.11 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 29 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.63 7.92 -51.93 -0.41 1.21 16 32 H 0.08 0.95 5.22 -51.93 -0.27 0.68 16 33 H 0.08 0.93 7.33 -51.93 -0.38 0.54 16 34 H 0.10 1.01 7.62 -51.93 -0.40 0.62 16 35 H 0.11 0.92 7.46 -51.93 -0.39 0.53 16 36 H 0.10 0.68 7.43 -51.93 -0.39 0.29 16 37 H 0.06 0.47 7.53 -51.93 -0.39 0.08 16 38 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.60 7.64 -51.93 -0.40 0.21 16 41 H 0.10 0.81 5.26 -51.93 -0.27 0.54 16 42 H 0.42 2.11 8.96 -34.47 -0.31 1.80 16 43 H 0.42 2.36 8.96 -34.47 -0.31 2.05 16 44 H 0.10 0.97 6.33 -51.93 -0.33 0.64 16 45 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -37.38 361.70 -8.15 -45.53 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.25 Total: 1.31 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.51 Total: -0.83 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.55 Total: -53.41 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.02 Total: -39.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 26.06 SS G_CDS: -0.71 Total: 25.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.38 -8.15 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275937462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.639 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds