Wall clock time and date at job start Wed Apr 1 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99733 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99249 * 3 2 1 6 6 H 1.48490 * 109.47334 * 149.99593 * 3 2 1 7 7 C 1.38815 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.46509 * 120.00084 * 174.60308 * 9 7 2 11 11 C 1.52997 * 110.01630 * 301.46425 * 10 9 7 12 12 N 1.46499 * 109.47337 * 303.90157 * 11 10 9 13 13 C 1.34770 * 120.00157 * 175.12929 * 12 11 10 14 14 O 1.21619 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.47416 * 120.00228 * 179.97438 * 13 12 11 16 16 C 1.36091 * 126.45019 * 180.02562 * 15 13 12 17 17 O 1.34261 * 106.95044 * 180.22017 * 16 15 13 18 18 C 1.34056 * 108.22623 * 359.60980 * 17 16 15 19 19 C 1.50690 * 125.37915 * 180.17684 * 18 17 16 20 20 F 1.39899 * 109.47575 * 270.25615 * 19 18 17 21 21 F 1.39901 * 109.47228 * 30.25633 * 19 18 17 22 22 F 1.39901 * 109.47061 * 150.25317 * 19 18 17 23 23 N 1.29935 * 109.23979 * 0.39918 * 18 17 16 24 24 C 1.54265 * 110.06808 * 62.88468 * 10 9 7 25 25 C 1.54887 * 104.19850 * 95.70078 * 24 10 9 26 26 C 1.54884 * 102.75117 * 37.93582 * 25 24 10 27 27 C 1.53871 * 110.03161 * 180.02562 * 10 9 7 28 28 H 0.97002 * 119.99975 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00610 * 354.60949 * 9 7 2 30 30 H 1.08998 * 109.46798 * 183.89983 * 11 10 9 31 31 H 1.08997 * 109.46996 * 63.90024 * 11 10 9 32 32 H 0.96996 * 119.99846 * 355.12524 * 12 11 10 33 33 H 1.07993 * 126.52771 * 359.95178 * 16 15 13 34 34 H 1.09009 * 110.48299 * 214.37519 * 24 10 9 35 35 H 1.09000 * 110.49073 * 337.01306 * 24 10 9 36 36 H 1.09004 * 110.75076 * 279.62356 * 25 24 10 37 37 H 1.08996 * 110.75563 * 156.25757 * 25 24 10 38 38 H 1.09000 * 110.48761 * 203.38195 * 26 25 24 39 39 H 1.09004 * 110.48395 * 80.73803 * 26 25 24 40 40 H 1.09000 * 110.03361 * 359.95633 * 27 10 9 41 41 H 1.08997 * 110.03066 * 121.38658 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0532 -3.6540 -0.1182 11 6 2.8624 -3.6732 -1.4166 12 7 1.9683 -3.4363 -2.5527 13 6 2.4758 -3.3117 -3.7950 14 8 3.6760 -3.3955 -3.9729 15 6 1.5761 -3.0739 -4.9383 16 6 1.9443 -2.9290 -6.2405 17 8 0.8196 -2.7259 -6.9450 18 6 -0.2176 -2.7539 -6.0963 19 6 -1.6636 -2.5717 -6.4793 20 9 -1.9943 -1.2137 -6.4197 21 9 -1.8643 -3.0438 -7.7809 22 9 -2.4747 -3.2886 -5.5931 23 7 0.2212 -2.9583 -4.8905 24 6 2.9914 -3.8409 1.0920 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0658 -4.8338 -0.0939 28 1 -0.4850 0.8401 -0.0004 29 1 0.3587 -2.3899 0.0791 30 1 3.3445 -4.6442 -1.5299 31 1 3.6219 -2.8921 -1.3829 32 1 1.0112 -3.3691 -2.4109 33 1 2.9501 -2.9657 -6.6319 34 1 3.9040 -4.3557 0.7913 35 1 3.2272 -2.8776 1.5443 36 1 1.4610 -4.1079 2.6315 37 1 2.8352 -5.2558 2.7525 38 1 0.5405 -6.0874 1.6072 39 1 2.0999 -6.5110 0.8335 40 1 0.0452 -4.4646 0.0070 41 1 1.1624 -5.4204 -1.0075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319362299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:33 Heat of formation + Delta-G solvation = -148.178886 kcal Electronic energy + Delta-G solvation = -31290.529347 eV Core-core repulsion = 26371.734119 eV Total energy + Delta-G solvation = -4918.795228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.60404 -48.14476 -48.07943 -43.92534 -39.47813 -38.15298 -35.37602 -34.16715 -33.32257 -31.70381 -30.63499 -28.29361 -28.01132 -27.07023 -25.23280 -23.75838 -23.00637 -22.34773 -20.85636 -20.09338 -19.27837 -19.07418 -18.77925 -18.46632 -17.49583 -17.10231 -16.96843 -16.60059 -15.78335 -15.27139 -14.94440 -14.87958 -14.73335 -14.63802 -14.48154 -14.25605 -14.20178 -14.19021 -13.99016 -13.53673 -13.32550 -13.18000 -12.85848 -12.64842 -12.09337 -11.73223 -11.46174 -11.32191 -11.14044 -10.80676 -10.73467 -10.65375 -10.52288 -10.25749 -10.15962 -9.99054 -9.87366 -9.67640 -9.65481 -8.92490 -8.55907 -7.01318 -5.79935 -3.09323 0.61343 1.26435 1.50007 2.37308 2.94024 3.29813 3.41358 3.44266 3.47929 3.48288 3.78091 3.84057 4.34830 4.54759 4.62500 4.89054 5.09491 5.11451 5.15744 5.22588 5.49634 5.55821 5.66333 5.73814 5.91928 5.93576 6.08658 6.13977 6.22877 6.30843 6.39896 6.53537 6.55486 6.75469 6.78008 6.80485 6.92285 7.04436 7.69944 7.89741 8.37913 8.44681 9.49975 10.03881 10.39105 11.41814 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003762 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.396231 B = 7441.560132 C = 8454.219322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.900 3.100 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.674 5.674 13 C 0.595 3.405 14 O -0.547 6.547 15 C -0.056 4.056 16 C 0.046 3.954 17 O -0.171 6.171 18 C 0.088 3.912 19 C 0.588 3.412 20 F -0.151 7.151 21 F -0.159 7.159 22 F -0.140 7.140 23 N -0.379 5.379 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.127 4.127 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.246 0.754 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -10.553 -11.261 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.731 3.269 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.322 5.322 13 C 0.378 3.622 14 O -0.426 6.426 15 C -0.178 4.178 16 C -0.028 4.028 17 O -0.055 6.055 18 C -0.122 4.122 19 C 0.532 3.468 20 F -0.132 7.132 21 F -0.140 7.140 22 F -0.121 7.121 23 N -0.111 5.111 24 C -0.171 4.171 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.262 0.738 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.397 -10.476 -10.857 15.092 hybrid contribution -0.010 1.293 -0.577 1.416 sum -0.407 -9.183 -11.434 14.671 Atomic orbital electron populations 1.69646 1.04973 1.25610 1.57263 1.24690 0.95398 0.97472 1.02765 0.86304 0.78809 0.84292 0.77465 1.21914 1.21842 1.20745 1.19060 0.90956 0.83831 1.42842 0.91270 1.42555 1.06037 0.99377 1.87180 1.20464 0.91366 0.87385 0.91182 1.22041 0.93158 0.99899 0.85793 1.45589 1.12436 1.68703 1.05426 1.16543 0.85912 0.77849 0.81869 1.90806 1.13780 1.53106 1.84952 1.22201 0.89343 1.10451 0.95823 1.25692 0.90277 0.96567 0.90301 1.84378 1.14653 1.67426 1.39020 1.25444 0.91141 1.10549 0.85079 1.15945 0.80533 0.75297 0.74993 1.93339 1.92741 1.31214 1.95932 1.93287 1.95349 1.88300 1.37064 1.93334 1.72865 1.77720 1.68203 1.70734 1.09976 1.10247 1.20132 1.22819 0.97242 1.00363 0.96692 1.22384 0.98756 0.97067 0.97236 1.22284 0.99614 0.97601 0.96291 1.22422 0.99969 0.96286 0.97795 0.93557 0.78004 0.92611 0.90979 0.75083 0.73775 0.92896 0.90210 0.91365 0.92707 0.92325 0.92289 0.91153 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.07 8.39 -15.06 -0.13 -6.20 16 8 H 0.07 1.78 7.23 -52.48 -0.38 1.40 16 9 N -0.71 -15.97 4.76 -46.20 -0.22 -16.19 16 10 C 0.19 3.37 0.68 -130.70 -0.09 3.29 16 11 C 0.12 2.10 3.99 -4.04 -0.02 2.08 16 12 N -0.67 -12.18 5.10 -61.39 -0.31 -12.50 16 13 C 0.59 10.55 7.81 -12.53 -0.10 10.45 16 14 O -0.55 -10.54 16.89 5.26 0.09 -10.45 16 15 C -0.06 -0.85 6.99 -83.02 -0.58 -1.43 16 16 C 0.05 0.53 11.95 29.96 0.36 0.89 16 17 O -0.17 -2.01 10.70 6.49 0.07 -1.94 16 18 C 0.09 1.17 7.53 -13.09 -0.10 1.07 16 19 C 0.59 6.86 3.57 36.00 0.13 6.99 16 20 F -0.15 -1.86 17.30 2.25 0.04 -1.82 16 21 F -0.16 -1.62 17.28 2.25 0.04 -1.58 16 22 F -0.14 -1.71 17.23 2.25 0.04 -1.68 16 23 N -0.38 -5.97 10.96 -7.66 -0.08 -6.05 16 24 C -0.13 -2.20 5.94 -25.07 -0.15 -2.35 16 25 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 26 C -0.12 -1.61 6.83 -25.12 -0.17 -1.78 16 27 C -0.13 -1.94 5.80 -25.67 -0.15 -2.09 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.38 9.40 7.28 -40.82 -0.30 9.10 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.47 7.49 -51.93 -0.39 1.08 16 32 H 0.41 7.66 7.72 -40.82 -0.32 7.34 16 33 H 0.25 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.05 0.80 7.86 -51.92 -0.41 0.39 16 35 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 41 H 0.06 0.86 7.55 -51.93 -0.39 0.47 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -29.98 362.81 -5.04 -35.02 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.61 Total: 11.88 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.26 Total: 8.76 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.11 Total: -60.86 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.16 Total: -12.39 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.98 -5.04 -35.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319362299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.157 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds