Wall clock time and date at job start Wed Apr 1 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46978 * 269.99733 * 3 2 1 5 5 H 1.48501 * 109.47138 * 29.99249 * 3 2 1 6 6 H 1.48490 * 109.47334 * 149.99593 * 3 2 1 7 7 C 1.38815 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.46509 * 120.00084 * 174.60308 * 9 7 2 11 11 C 1.52997 * 110.01630 * 301.46425 * 10 9 7 12 12 N 1.46499 * 109.47337 * 303.90157 * 11 10 9 13 13 C 1.34770 * 120.00157 * 175.12929 * 12 11 10 14 14 O 1.21619 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.47416 * 120.00228 * 179.97438 * 13 12 11 16 16 C 1.36091 * 126.45019 * 180.02562 * 15 13 12 17 17 O 1.34261 * 106.95044 * 180.22017 * 16 15 13 18 18 C 1.34056 * 108.22623 * 359.60980 * 17 16 15 19 19 C 1.50690 * 125.37915 * 180.17684 * 18 17 16 20 20 F 1.39899 * 109.47575 * 270.25615 * 19 18 17 21 21 F 1.39901 * 109.47228 * 30.25633 * 19 18 17 22 22 F 1.39901 * 109.47061 * 150.25317 * 19 18 17 23 23 N 1.29935 * 109.23979 * 0.39918 * 18 17 16 24 24 C 1.54265 * 110.06808 * 62.88468 * 10 9 7 25 25 C 1.54887 * 104.19850 * 95.70078 * 24 10 9 26 26 C 1.54884 * 102.75117 * 37.93582 * 25 24 10 27 27 C 1.53871 * 110.03161 * 180.02562 * 10 9 7 28 28 H 0.97002 * 119.99975 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00610 * 354.60949 * 9 7 2 30 30 H 1.08998 * 109.46798 * 183.89983 * 11 10 9 31 31 H 1.08997 * 109.46996 * 63.90024 * 11 10 9 32 32 H 0.96996 * 119.99846 * 355.12524 * 12 11 10 33 33 H 1.07993 * 126.52771 * 359.95178 * 16 15 13 34 34 H 1.09009 * 110.48299 * 214.37519 * 24 10 9 35 35 H 1.09000 * 110.49073 * 337.01306 * 24 10 9 36 36 H 1.09004 * 110.75076 * 279.62356 * 25 24 10 37 37 H 1.08996 * 110.75563 * 156.25757 * 25 24 10 38 38 H 1.09000 * 110.48761 * 203.38195 * 26 25 24 39 39 H 1.09004 * 110.48395 * 80.73803 * 26 25 24 40 40 H 1.09000 * 110.03361 * 359.95633 * 27 10 9 41 41 H 1.08997 * 110.03066 * 121.38658 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0532 -3.6540 -0.1182 11 6 2.8624 -3.6732 -1.4166 12 7 1.9683 -3.4363 -2.5527 13 6 2.4758 -3.3117 -3.7950 14 8 3.6760 -3.3955 -3.9729 15 6 1.5761 -3.0739 -4.9383 16 6 1.9443 -2.9290 -6.2405 17 8 0.8196 -2.7259 -6.9450 18 6 -0.2176 -2.7539 -6.0963 19 6 -1.6636 -2.5717 -6.4793 20 9 -1.9943 -1.2137 -6.4197 21 9 -1.8643 -3.0438 -7.7809 22 9 -2.4747 -3.2886 -5.5931 23 7 0.2212 -2.9583 -4.8905 24 6 2.9914 -3.8409 1.0920 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0658 -4.8338 -0.0939 28 1 -0.4850 0.8401 -0.0004 29 1 0.3587 -2.3899 0.0791 30 1 3.3445 -4.6442 -1.5299 31 1 3.6219 -2.8921 -1.3829 32 1 1.0112 -3.3691 -2.4109 33 1 2.9501 -2.9657 -6.6319 34 1 3.9040 -4.3557 0.7913 35 1 3.2272 -2.8776 1.5443 36 1 1.4610 -4.1079 2.6315 37 1 2.8352 -5.2558 2.7525 38 1 0.5405 -6.0874 1.6072 39 1 2.0999 -6.5110 0.8335 40 1 0.0452 -4.4646 0.0070 41 1 1.1624 -5.4204 -1.0075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319362299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:33 Heat of formation + Delta-G solvation = -170.228640 kcal Electronic energy + Delta-G solvation = -31291.485496 eV Core-core repulsion = 26371.734119 eV Total energy + Delta-G solvation = -4919.751377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.54186 -49.05314 -49.04399 -44.96356 -40.88130 -39.54770 -36.47764 -35.58997 -35.13219 -32.79482 -32.36038 -29.64676 -29.50614 -28.10166 -26.64366 -25.40837 -24.36767 -23.38649 -22.09997 -21.32450 -20.51793 -20.02549 -19.89956 -19.68359 -18.92510 -18.63355 -18.12486 -17.66784 -17.24638 -16.69103 -16.24450 -16.04106 -15.85958 -15.82370 -15.74750 -15.41431 -15.28317 -15.18853 -15.14300 -15.12492 -14.81063 -14.27046 -14.16462 -14.04818 -13.56285 -13.21849 -12.97236 -12.90093 -12.48447 -12.40754 -12.35190 -12.16483 -11.88059 -11.72067 -11.58719 -11.42947 -11.38698 -11.29685 -10.87921 -10.74824 -10.00631 -8.94928 -7.90377 -5.16092 -0.37915 0.28316 0.33734 1.39330 1.42239 1.44267 1.50568 1.92145 2.03827 2.17356 2.55737 2.84988 2.89074 3.23974 3.39671 3.46822 3.76932 3.85064 3.86698 3.96105 4.14522 4.24415 4.36156 4.44835 4.58490 4.67645 4.75122 4.86415 4.96969 5.04897 5.13800 5.19389 5.28394 5.40371 5.40600 5.55047 5.61601 5.65825 5.78478 6.32399 6.48315 7.03886 7.39581 8.14265 8.37425 9.32024 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009421 B = 0.003762 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.396231 B = 7441.560132 C = 8454.219322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.067 4.067 3 Si 0.949 3.051 4 H -0.299 1.299 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.213 4.213 8 H 0.067 0.933 9 N -0.715 5.715 10 C 0.182 3.818 11 C 0.123 3.877 12 N -0.680 5.680 13 C 0.594 3.406 14 O -0.567 6.567 15 C -0.097 4.097 16 C 0.087 3.913 17 O -0.160 6.160 18 C 0.087 3.913 19 C 0.597 3.403 20 F -0.155 7.155 21 F -0.146 7.146 22 F -0.144 7.144 23 N -0.409 5.409 24 C -0.130 4.130 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.122 4.122 28 H 0.246 0.754 29 H 0.374 0.626 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.409 0.591 33 H 0.287 0.713 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -12.263 -12.258 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.260 4.260 3 Si 0.781 3.219 4 H -0.227 1.227 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.345 4.345 8 H 0.085 0.915 9 N -0.355 5.355 10 C 0.091 3.909 11 C -0.003 4.003 12 N -0.327 5.327 13 C 0.379 3.621 14 O -0.448 6.448 15 C -0.219 4.219 16 C 0.013 3.987 17 O -0.043 6.043 18 C -0.124 4.124 19 C 0.541 3.459 20 F -0.136 7.136 21 F -0.127 7.127 22 F -0.125 7.125 23 N -0.140 5.140 24 C -0.170 4.170 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.160 4.160 28 H 0.055 0.945 29 H 0.207 0.793 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.245 0.755 33 H 0.302 0.698 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.628 -12.224 -11.849 17.036 hybrid contribution -0.248 1.738 -0.325 1.785 sum 0.380 -10.486 -12.175 16.072 Atomic orbital electron populations 1.69771 1.06000 1.25348 1.60000 1.25262 0.96061 0.99991 1.04664 0.85490 0.78111 0.81502 0.76816 1.22684 1.22457 1.19746 1.19255 0.90888 0.84947 1.39420 0.91510 1.42657 1.05582 1.00270 1.87012 1.20767 0.92096 0.86390 0.91612 1.21953 0.92521 0.99980 0.85798 1.45643 1.12144 1.69137 1.05824 1.16808 0.86050 0.76984 0.82229 1.90779 1.14591 1.54105 1.85356 1.21993 0.89241 1.14168 0.96479 1.26432 0.91255 0.92197 0.88830 1.84431 1.14444 1.66976 1.38454 1.25614 0.91919 1.10107 0.84729 1.15761 0.79795 0.75059 0.75305 1.93332 1.92695 1.31602 1.95994 1.93313 1.95205 1.88116 1.36106 1.93327 1.72891 1.77799 1.68510 1.70641 1.10566 1.11242 1.21554 1.22768 0.98217 0.99635 0.96352 1.22354 0.98529 0.96919 0.97253 1.22273 1.00547 0.97345 0.94684 1.22370 0.98359 0.95530 0.99694 0.94478 0.79298 0.90367 0.93824 0.75503 0.69758 0.90699 0.93303 0.93441 0.90165 0.90939 0.89893 0.92449 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.95 46.61 29.55 68.60 2.03 48.64 16 4 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 5 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.21 -11.16 8.39 84.04 0.70 -10.45 16 8 H 0.07 3.50 7.23 -2.91 -0.02 3.47 16 9 N -0.72 -32.74 4.76 -300.07 -1.43 -34.16 16 10 C 0.18 6.42 0.68 4.32 0.00 6.43 16 11 C 0.12 4.36 3.99 86.38 0.34 4.70 16 12 N -0.68 -24.57 5.10 -466.39 -2.38 -26.94 16 13 C 0.59 20.79 7.81 86.66 0.68 21.46 16 14 O -0.57 -21.36 16.89 -4.09 -0.07 -21.43 16 15 C -0.10 -2.88 6.99 40.41 0.28 -2.60 16 16 C 0.09 1.79 11.95 67.32 0.80 2.60 16 17 O -0.16 -3.38 10.70 0.29 0.00 -3.38 16 18 C 0.09 2.21 7.53 88.39 0.67 2.88 16 19 C 0.60 13.31 3.57 71.23 0.25 13.57 16 20 F -0.16 -3.71 17.30 44.97 0.78 -2.93 16 21 F -0.15 -2.74 17.28 44.97 0.78 -1.96 16 22 F -0.14 -3.45 17.23 44.97 0.78 -2.68 16 23 N -0.41 -12.67 10.96 -293.04 -3.21 -15.89 16 24 C -0.13 -4.21 5.94 31.67 0.19 -4.02 16 25 C -0.11 -3.09 6.91 31.88 0.22 -2.87 16 26 C -0.11 -2.64 6.83 31.63 0.22 -2.42 16 27 C -0.12 -3.54 5.80 31.28 0.18 -3.36 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.37 18.77 7.28 -92.71 -0.67 18.09 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.78 7.49 -2.39 -0.02 1.77 16 32 H 0.41 15.40 7.72 -92.71 -0.72 14.68 16 33 H 0.29 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.07 2.09 7.86 -2.38 -0.02 2.08 16 35 H 0.05 1.88 7.12 -2.39 -0.02 1.87 16 36 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.83 7.44 -2.39 -0.02 1.82 16 41 H 0.07 1.96 7.55 -2.39 -0.02 1.95 16 Total: -1.00 -66.17 362.81 2.29 -63.87 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.27 Total: 31.19 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.01 Total: 22.62 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.74 Total: -133.93 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 2.33 Total: -7.57 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -66.17 2.29 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319362299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.355 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds