Wall clock time and date at job start Wed Apr 1 2020 04:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46808 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46847 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99883 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.40095 * 119.99878 * 179.97438 * 15 13 12 17 17 C 1.34774 * 120.00457 * 179.97438 * 16 15 13 18 18 O 1.21583 * 120.00503 * 179.97438 * 17 16 15 19 19 N 1.34777 * 119.99545 * 0.02562 * 17 16 15 20 20 C 1.46499 * 120.00195 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.64122 * 325.42073 * 20 19 17 22 22 C 1.53875 * 109.65069 * 85.72026 * 20 19 17 23 23 C 1.55048 * 106.62644 * 167.03429 * 22 20 19 24 24 S 1.83283 * 102.56574 * 317.56914 * 23 22 20 25 25 O 1.42104 * 109.35355 * 269.81404 * 24 23 22 26 26 O 1.42102 * 109.47598 * 136.64920 * 24 23 22 27 27 C 1.54170 * 109.64708 * 204.99988 * 20 19 17 28 28 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 30 30 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 31 31 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 32 32 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 33 33 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 34 34 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 35 35 H 1.08996 * 109.46961 * 299.99496 * 12 11 10 36 36 H 1.08994 * 109.47402 * 59.99882 * 12 11 10 37 37 H 0.96996 * 119.99887 * 0.02562 * 15 13 12 38 38 H 0.97005 * 119.99932 * 0.02562 * 16 15 13 39 39 H 0.97000 * 120.00327 * 359.97438 * 19 17 16 40 40 H 1.08997 * 110.02496 * 286.32864 * 22 20 19 41 41 H 1.09002 * 110.02545 * 47.74367 * 22 20 19 42 42 H 1.08995 * 110.79200 * 199.29702 * 23 22 20 43 43 H 1.09003 * 110.94833 * 75.91231 * 23 22 20 44 44 H 1.08996 * 110.31571 * 331.13794 * 27 20 19 45 45 H 1.08996 * 110.32040 * 93.33686 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 6 2.4744 -6.1500 -0.0144 13 6 1.7208 -7.4552 -0.0144 14 8 0.5079 -7.4551 -0.0089 15 7 2.3946 -8.6224 -0.0205 16 7 1.6941 -9.8356 -0.0200 17 6 2.3679 -11.0028 -0.0266 18 8 1.7600 -12.0558 -0.0257 19 7 3.7156 -11.0029 -0.0332 20 6 4.4481 -12.2715 -0.0410 21 1 3.9022 -13.0134 0.5419 22 6 4.6061 -12.7690 -1.4886 23 6 5.6549 -13.9103 -1.4535 24 16 6.9315 -13.2441 -0.3195 25 8 7.8987 -12.5232 -1.0707 26 8 7.3485 -14.2650 0.5766 27 6 5.8499 -12.0645 0.5664 28 1 -0.4851 0.8401 0.0004 29 1 0.6283 -2.5592 0.8921 30 1 0.6202 -2.5546 -0.8878 31 1 2.8677 -3.6020 -0.9008 32 1 2.8758 -3.6067 0.8792 33 1 0.8578 -5.0469 0.8854 34 1 0.8491 -5.0427 -0.8945 35 1 3.0969 -6.0904 -0.9071 36 1 3.1050 -6.0942 0.8728 37 1 3.3646 -8.6223 -0.0245 38 1 0.7241 -9.8356 -0.0156 39 1 4.2007 -10.1628 -0.0336 40 1 3.6537 -13.1484 -1.8589 41 1 4.9583 -11.9577 -2.1257 42 1 6.0714 -14.0837 -2.4457 43 1 5.2210 -14.8262 -1.0523 44 1 6.1877 -11.0419 0.3987 45 1 5.8375 -12.2899 1.6327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324037544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:13 Heat of formation + Delta-G solvation = -112.368592 kcal Electronic energy + Delta-G solvation = -27227.480787 eV Core-core repulsion = 22987.539101 eV Total energy + Delta-G solvation = -4239.941686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12728 -39.76682 -37.74078 -37.54736 -36.63871 -36.20857 -35.02327 -33.49287 -32.79599 -31.54121 -30.26895 -29.44823 -25.83965 -25.63922 -22.97468 -22.80014 -21.44517 -21.04770 -20.15166 -19.78140 -19.42212 -18.06304 -17.43807 -17.29347 -16.52783 -16.37438 -16.23154 -16.15785 -15.97556 -15.62810 -15.25129 -14.80740 -14.68100 -14.50609 -14.22742 -14.14389 -13.39902 -13.18442 -12.95893 -12.75188 -12.74676 -12.65296 -12.53895 -12.10646 -11.85407 -11.72652 -11.69139 -11.53461 -11.16315 -11.06056 -10.97959 -10.66428 -10.58804 -10.52033 -10.25700 -10.00964 -9.70923 -9.33126 -9.06182 -8.76145 -8.35556 -6.00222 -4.03119 -0.69387 1.40414 1.76679 2.18599 2.31296 2.57567 2.86341 3.30525 3.31989 3.37015 3.39589 3.48493 3.81446 3.86019 4.04752 4.13289 4.19985 4.44669 4.54032 4.65908 4.78479 4.92729 5.04654 5.08032 5.12385 5.22684 5.35335 5.56130 5.58018 5.95588 5.98024 6.01268 6.15624 6.40118 6.70642 6.84964 6.91385 7.10408 7.12711 7.67727 7.73303 7.82281 8.00103 8.02520 8.41542 9.04464 9.60953 11.10964 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.001544 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.170504 B =18135.505346 C =19423.900984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.515 3.485 14 O -0.522 6.522 15 N -0.541 5.541 16 N -0.529 5.529 17 C 0.715 3.285 18 O -0.572 6.572 19 N -0.736 5.736 20 C 0.174 3.826 21 H 0.116 0.884 22 C -0.138 4.138 23 C -0.583 4.583 24 S 2.398 3.602 25 O -0.929 6.929 26 O -0.932 6.932 27 C -0.614 4.614 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.417 0.583 38 H 0.446 0.554 39 H 0.397 0.603 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.572 -30.148 -1.410 33.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.169 4.169 13 C 0.303 3.697 14 O -0.395 6.395 15 N -0.295 5.295 16 N -0.284 5.284 17 C 0.414 3.586 18 O -0.446 6.446 19 N -0.394 5.394 20 C 0.067 3.933 21 H 0.134 0.866 22 C -0.178 4.178 23 C -0.713 4.713 24 S 2.579 3.421 25 O -0.926 6.926 26 O -0.929 6.929 27 C -0.743 4.743 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.258 0.742 38 H 0.292 0.708 39 H 0.233 0.767 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.179 -31.042 -1.273 33.748 hybrid contribution -0.065 1.631 -0.076 1.634 sum 13.114 -29.411 -1.349 32.230 Atomic orbital electron populations 1.69970 1.06052 1.26578 1.50758 1.25041 0.94848 0.99269 0.95400 0.86605 0.79811 0.83565 0.78062 1.20705 1.21246 1.19923 1.21262 0.92976 0.91155 1.50631 0.92728 1.19100 0.94049 0.91252 0.97388 1.21653 0.99138 0.93748 1.00247 1.21507 0.96968 0.92446 1.03343 1.21812 1.00287 0.90089 1.04752 1.21567 0.88977 0.83903 0.75241 1.90770 1.13907 1.86723 1.48076 1.45309 1.07815 0.97207 1.79206 1.44508 1.08917 0.94958 1.80028 1.15647 0.81911 0.82916 0.78163 1.91049 1.67304 1.27656 1.58561 1.45088 1.04726 1.08881 1.80743 1.21165 0.89434 0.87019 0.95700 0.86629 1.22714 1.01416 0.96628 0.97063 1.30598 1.15123 1.08600 1.17026 1.08922 0.77907 0.77403 0.77858 1.93659 1.55742 1.72695 1.70512 1.93647 1.80189 1.55470 1.63548 1.30995 1.10068 1.18606 1.14598 0.93004 0.96554 0.96536 0.93296 0.93312 0.91509 0.91495 0.88340 0.88355 0.74181 0.70785 0.76705 0.87340 0.88885 0.83859 0.83910 0.83660 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.10 -1.61 4.50 -26.73 -0.12 -1.73 16 12 C -0.13 -1.26 5.70 -27.88 -0.16 -1.42 16 13 C 0.52 5.47 7.95 -10.98 -0.09 5.39 16 14 O -0.52 -7.96 15.82 5.56 0.09 -7.87 16 15 N -0.54 -3.74 6.26 31.22 0.20 -3.55 16 16 N -0.53 -4.45 6.26 27.63 0.17 -4.28 16 17 C 0.71 5.82 8.65 -86.92 -0.75 5.07 16 18 O -0.57 -6.63 16.84 5.29 0.09 -6.54 16 19 N -0.74 -3.10 5.06 -57.63 -0.29 -3.39 16 20 C 0.17 0.55 2.88 -66.86 -0.19 0.36 16 21 H 0.12 0.44 7.57 -51.93 -0.39 0.05 16 22 C -0.14 -0.36 6.08 -25.19 -0.15 -0.52 16 23 C -0.58 -0.92 7.31 38.24 0.28 -0.64 16 24 S 2.40 8.48 6.10 -107.50 -0.66 7.82 16 25 O -0.93 -6.81 18.15 -57.73 -1.05 -7.85 16 26 O -0.93 -6.98 18.15 -57.73 -1.05 -8.03 16 27 C -0.61 -0.87 6.92 37.77 0.26 -0.61 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.42 1.24 6.70 -182.60 -1.22 0.01 16 38 H 0.45 4.39 8.10 -182.60 -1.48 2.91 16 39 H 0.40 0.62 6.29 -40.82 -0.26 0.37 16 40 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.14 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.14 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.15 -0.04 7.77 -51.93 -0.40 -0.44 16 45 H 0.15 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -41.58 389.71 -11.31 -52.89 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -8.79 Total: -6.04 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -1.61 Total: -9.27 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.81 Total: -37.31 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.92 Total: -30.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 8.48 SS G_CDS: -0.66 Total: 7.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -41.58 -11.31 -52.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324037544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.481 kcal (2) G-P(sol) polarization free energy of solvation -41.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds