Wall clock time and date at job start Wed Apr 1 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00038 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00369 * 179.97438 * 13 12 11 16 16 N 1.40098 * 120.00117 * 179.97438 * 15 13 12 17 17 C 1.34777 * 120.00117 * 179.97438 * 16 15 13 18 18 O 1.21582 * 120.00196 * 180.02562 * 17 16 15 19 19 N 1.34779 * 119.99860 * 0.02562 * 17 16 15 20 20 C 1.46499 * 119.99836 * 179.97438 * 19 17 16 21 21 H 1.08995 * 109.64837 * 325.42830 * 20 19 17 22 22 C 1.53880 * 109.64556 * 204.99708 * 20 19 17 23 23 C 1.55043 * 106.62199 * 192.96632 * 22 20 19 24 24 S 1.83288 * 102.56718 * 42.44053 * 23 22 20 25 25 O 1.42098 * 109.35447 * 90.18389 * 24 23 22 26 26 O 1.42103 * 109.34839 * 223.38604 * 24 23 22 27 27 C 1.54167 * 109.64448 * 85.72598 * 20 19 17 28 28 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 35 35 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 37 37 H 0.97003 * 119.99640 * 359.97438 * 15 13 12 38 38 H 0.97003 * 120.00243 * 359.97438 * 16 15 13 39 39 H 0.97001 * 119.99540 * 0.02562 * 19 17 16 40 40 H 1.09002 * 110.02660 * 312.26432 * 22 20 19 41 41 H 1.09005 * 110.02520 * 73.63039 * 22 20 19 42 42 H 1.09001 * 110.78639 * 160.70573 * 23 22 20 43 43 H 1.08990 * 110.79368 * 283.97268 * 23 22 20 44 44 H 1.08998 * 110.31648 * 266.65858 * 27 20 19 45 45 H 1.09002 * 110.32035 * 28.86125 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 8 8.1751 -3.0285 0.0042 15 7 8.2426 -5.2460 0.0057 16 7 9.6436 -5.2460 0.0057 17 6 10.3175 -6.4132 0.0072 18 8 11.5333 -6.4131 0.0077 19 7 9.6437 -7.5804 0.0083 20 6 10.3762 -8.8491 0.0094 21 1 11.2915 -8.7443 -0.5731 22 6 9.4975 -9.9545 -0.6020 23 6 10.1860 -11.3032 -0.2695 24 16 10.6954 -11.0713 1.4758 25 8 9.6529 -11.5147 2.3336 26 8 12.0166 -11.5649 1.6502 27 6 10.7291 -9.2425 1.4577 28 1 -0.4849 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8888 31 1 3.6587 -3.1509 -0.8875 32 1 3.6580 -3.1497 0.8925 33 1 5.9157 -2.1230 -0.8865 34 1 5.9143 -2.1221 0.8934 35 1 5.6977 -4.5926 0.8938 36 1 5.6990 -4.5929 -0.8862 37 1 7.7576 -6.0861 0.0064 38 1 10.1286 -4.4059 0.0045 39 1 8.6736 -7.5804 0.0075 40 1 8.5008 -9.9254 -0.1615 41 1 9.4318 -9.8243 -1.6823 42 1 9.4815 -12.1299 -0.3603 43 1 11.0527 -11.4635 -0.9106 44 1 11.7237 -8.8797 1.7168 45 1 9.9875 -8.8435 2.1497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324037545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:15 Heat of formation + Delta-G solvation = -109.063873 kcal Electronic energy + Delta-G solvation = -27286.845617 eV Core-core repulsion = 23047.047234 eV Total energy + Delta-G solvation = -4239.798382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15671 -39.81755 -37.75275 -37.56838 -36.59461 -36.26326 -35.16271 -33.52667 -32.76938 -31.63833 -30.22391 -29.76837 -26.13335 -25.86271 -22.83853 -22.69929 -21.55398 -20.96187 -20.16177 -19.70301 -19.40436 -18.14164 -17.53037 -17.39234 -16.68992 -16.47882 -16.30754 -16.19459 -16.02507 -15.70830 -15.21479 -14.88593 -14.71203 -14.38710 -14.31323 -14.13969 -13.47987 -13.18948 -12.93325 -12.76012 -12.74473 -12.71088 -12.61263 -12.31737 -12.03232 -11.86796 -11.78456 -11.50752 -11.23801 -11.17199 -11.06312 -10.87030 -10.65699 -10.38035 -10.03643 -9.93042 -9.74050 -9.58075 -9.19240 -8.80807 -8.54835 -6.05929 -4.03967 -0.65284 1.36393 1.80241 2.13186 2.24646 2.53206 2.93566 3.30846 3.35749 3.38545 3.43326 3.53940 3.67879 3.81001 4.06044 4.07871 4.16950 4.44860 4.48192 4.66448 4.79873 4.88528 4.94750 4.99240 5.04301 5.12422 5.28766 5.49397 5.53521 5.86070 5.89693 5.93333 6.03531 6.25953 6.54405 6.68089 6.83218 6.89162 7.08112 7.29380 7.42157 7.69601 7.78600 7.97609 8.51793 8.98580 9.57207 11.07426 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.001546 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.986632 B =18107.231843 C =18944.641017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.516 3.484 14 O -0.524 6.524 15 N -0.540 5.540 16 N -0.529 5.529 17 C 0.715 3.285 18 O -0.570 6.570 19 N -0.736 5.736 20 C 0.173 3.827 21 H 0.116 0.884 22 C -0.132 4.132 23 C -0.586 4.586 24 S 2.394 3.606 25 O -0.931 6.931 26 O -0.933 6.933 27 C -0.615 4.615 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.418 0.582 38 H 0.445 0.555 39 H 0.397 0.603 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.979 -25.558 -1.811 33.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.169 4.169 13 C 0.303 3.697 14 O -0.397 6.397 15 N -0.294 5.294 16 N -0.285 5.285 17 C 0.414 3.586 18 O -0.443 6.443 19 N -0.394 5.394 20 C 0.066 3.934 21 H 0.134 0.866 22 C -0.171 4.171 23 C -0.716 4.716 24 S 2.576 3.424 25 O -0.928 6.928 26 O -0.930 6.930 27 C -0.745 4.745 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.259 0.741 38 H 0.292 0.708 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.336 -25.450 -1.080 34.546 hybrid contribution -0.405 1.432 -0.591 1.601 sum 22.931 -24.018 -1.671 33.249 Atomic orbital electron populations 1.69915 1.06311 1.26891 1.51250 1.25043 0.94735 0.99237 0.94557 0.86778 0.80410 0.83573 0.78538 1.20322 1.21424 1.18930 1.21162 0.89607 0.94396 1.50779 0.91083 1.19574 0.96988 0.92358 0.96385 1.21481 0.91266 1.00159 1.01111 1.21535 0.97543 0.92194 1.03287 1.21786 0.87528 1.02657 1.04977 1.21538 0.90963 0.81915 0.75243 1.90766 1.70037 1.30662 1.48240 1.45284 0.94561 1.10509 1.79072 1.44519 0.94756 1.09063 1.80150 1.15632 0.85040 0.79768 0.78135 1.91051 1.10359 1.84582 1.58348 1.45027 1.09496 1.04179 1.80660 1.21192 0.97064 0.82793 0.92396 0.86609 1.22482 0.99571 0.89667 1.05337 1.30609 1.11876 1.04768 1.24312 1.08985 0.75646 0.78849 0.78924 1.93654 1.57619 1.78990 1.62523 1.93644 1.36845 1.77457 1.85020 1.31147 1.12849 1.25403 1.05137 0.92764 0.96587 0.97019 0.92691 0.92659 0.91505 0.91488 0.88171 0.88188 0.74115 0.70806 0.76738 0.88531 0.87237 0.83704 0.83839 0.83402 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.02 -0.36 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -1.80 5.15 -26.73 -0.14 -1.94 16 11 C -0.11 -1.52 4.50 -26.73 -0.12 -1.64 16 12 C -0.13 -1.15 5.70 -27.88 -0.16 -1.31 16 13 C 0.52 5.11 7.95 -10.99 -0.09 5.03 16 14 O -0.52 -7.59 15.82 5.55 0.09 -7.50 16 15 N -0.54 -3.45 6.26 31.22 0.20 -3.25 16 16 N -0.53 -4.28 6.26 27.63 0.17 -4.11 16 17 C 0.72 5.73 8.65 -86.92 -0.75 4.98 16 18 O -0.57 -6.68 16.84 5.29 0.09 -6.59 16 19 N -0.74 -2.83 5.02 -57.63 -0.29 -3.12 16 20 C 0.17 0.50 2.88 -66.86 -0.19 0.31 16 21 H 0.12 0.41 7.57 -51.93 -0.39 0.02 16 22 C -0.13 -0.03 5.98 -25.19 -0.15 -0.18 16 23 C -0.59 -0.32 7.31 38.24 0.28 -0.04 16 24 S 2.39 9.66 6.11 -107.50 -0.66 9.01 16 25 O -0.93 -7.24 18.15 -57.71 -1.05 -8.28 16 26 O -0.93 -7.67 18.15 -57.71 -1.05 -8.72 16 27 C -0.62 -2.05 6.91 37.77 0.26 -1.79 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.42 0.99 6.70 -182.60 -1.22 -0.23 16 38 H 0.45 4.25 8.10 -182.60 -1.48 2.77 16 39 H 0.40 0.38 6.52 -40.82 -0.27 0.12 16 40 H 0.10 -0.11 8.12 -51.93 -0.42 -0.54 16 41 H 0.11 -0.07 8.14 -51.93 -0.42 -0.49 16 42 H 0.14 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.14 -0.09 8.14 -51.93 -0.42 -0.51 16 44 H 0.15 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.14 0.39 8.07 -51.93 -0.42 -0.03 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -42.48 386.46 -10.95 -53.43 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -8.78 Total: -6.67 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.60 Total: -10.19 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.85 Total: -37.36 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.92 Total: -31.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 9.66 SS G_CDS: -0.66 Total: 9.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -42.48 -10.95 -53.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324037545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.637 kcal (2) G-P(sol) polarization free energy of solvation -42.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds