Wall clock time and date at job start Wed Apr 1 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00038 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00369 * 179.97438 * 13 12 11 16 16 N 1.40098 * 120.00117 * 179.97438 * 15 13 12 17 17 C 1.34777 * 120.00117 * 179.97438 * 16 15 13 18 18 O 1.21582 * 120.00196 * 180.02562 * 17 16 15 19 19 N 1.34779 * 119.99860 * 0.02562 * 17 16 15 20 20 C 1.46499 * 119.99836 * 179.97438 * 19 17 16 21 21 H 1.08995 * 109.64837 * 325.42830 * 20 19 17 22 22 C 1.53880 * 109.64556 * 204.99708 * 20 19 17 23 23 C 1.55043 * 106.62199 * 192.96632 * 22 20 19 24 24 S 1.83288 * 102.56718 * 42.44053 * 23 22 20 25 25 O 1.42098 * 109.35447 * 90.18389 * 24 23 22 26 26 O 1.42103 * 109.34839 * 223.38604 * 24 23 22 27 27 C 1.54167 * 109.64448 * 85.72598 * 20 19 17 28 28 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 35 35 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 36 36 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 37 37 H 0.97003 * 119.99640 * 359.97438 * 15 13 12 38 38 H 0.97003 * 120.00243 * 359.97438 * 16 15 13 39 39 H 0.97001 * 119.99540 * 0.02562 * 19 17 16 40 40 H 1.09002 * 110.02660 * 312.26432 * 22 20 19 41 41 H 1.09005 * 110.02520 * 73.63039 * 22 20 19 42 42 H 1.09001 * 110.78639 * 160.70573 * 23 22 20 43 43 H 1.08990 * 110.79368 * 283.97268 * 23 22 20 44 44 H 1.08998 * 110.31648 * 266.65858 * 27 20 19 45 45 H 1.09002 * 110.32035 * 28.86125 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 6 6.0617 -4.0789 0.0040 13 6 7.5686 -4.0789 0.0046 14 8 8.1751 -3.0285 0.0042 15 7 8.2426 -5.2460 0.0057 16 7 9.6436 -5.2460 0.0057 17 6 10.3175 -6.4132 0.0072 18 8 11.5333 -6.4131 0.0077 19 7 9.6437 -7.5804 0.0083 20 6 10.3762 -8.8491 0.0094 21 1 11.2915 -8.7443 -0.5731 22 6 9.4975 -9.9545 -0.6020 23 6 10.1860 -11.3032 -0.2695 24 16 10.6954 -11.0713 1.4758 25 8 9.6529 -11.5147 2.3336 26 8 12.0166 -11.5649 1.6502 27 6 10.7291 -9.2425 1.4577 28 1 -0.4849 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8888 31 1 3.6587 -3.1509 -0.8875 32 1 3.6580 -3.1497 0.8925 33 1 5.9157 -2.1230 -0.8865 34 1 5.9143 -2.1221 0.8934 35 1 5.6977 -4.5926 0.8938 36 1 5.6990 -4.5929 -0.8862 37 1 7.7576 -6.0861 0.0064 38 1 10.1286 -4.4059 0.0045 39 1 8.6736 -7.5804 0.0075 40 1 8.5008 -9.9254 -0.1615 41 1 9.4318 -9.8243 -1.6823 42 1 9.4815 -12.1299 -0.3603 43 1 11.0527 -11.4635 -0.9106 44 1 11.7237 -8.8797 1.7168 45 1 9.9875 -8.8435 2.1497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324037545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:14 Heat of formation + Delta-G solvation = -145.734247 kcal Electronic energy + Delta-G solvation = -27288.435763 eV Core-core repulsion = 23047.047234 eV Total energy + Delta-G solvation = -4241.388529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76905 -40.54316 -38.16567 -37.96275 -37.08377 -37.04346 -36.50966 -34.60008 -33.89160 -32.64184 -31.23856 -30.33374 -27.54426 -26.16943 -24.08430 -23.15559 -22.11355 -21.86945 -21.53758 -20.25008 -19.77560 -18.88799 -18.70838 -17.84484 -17.77285 -17.12448 -17.00700 -16.69391 -16.56196 -16.40487 -16.29722 -15.73014 -15.56759 -15.20586 -15.10348 -14.84121 -14.67752 -13.96279 -13.72564 -13.63155 -13.49227 -13.39949 -13.24296 -13.15993 -13.01805 -12.87174 -12.52523 -12.32012 -12.24946 -12.03843 -11.87612 -11.77919 -11.73770 -11.51967 -11.34806 -11.29212 -11.23055 -11.01434 -10.73640 -10.47887 -9.44353 -8.27574 -6.30080 -0.94656 0.74480 1.35980 1.38091 1.40441 1.49852 1.53582 1.85323 1.92863 2.37277 2.66668 3.06153 3.08371 3.32494 3.36640 3.53064 3.66197 3.93100 3.94641 4.06231 4.08912 4.21593 4.51062 4.63370 4.65154 4.70945 4.81767 4.83566 4.89034 4.90155 5.01396 5.19124 5.20099 5.22093 5.30676 5.36833 5.47408 5.66482 5.71336 5.72721 6.25861 6.32433 6.53859 6.78847 7.13755 7.33505 7.34978 8.88791 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.001546 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.986632 B =18107.231843 C =18944.641017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.528 4.528 8 H 0.039 0.961 9 C -0.020 4.020 10 C -0.094 4.094 11 C -0.101 4.101 12 C -0.119 4.119 13 C 0.518 3.482 14 O -0.576 6.576 15 N -0.516 5.516 16 N -0.536 5.536 17 C 0.714 3.286 18 O -0.611 6.611 19 N -0.717 5.717 20 C 0.165 3.835 21 H 0.109 0.891 22 C -0.128 4.128 23 C -0.555 4.555 24 S 2.393 3.607 25 O -0.974 6.974 26 O -0.985 6.985 27 C -0.610 4.610 28 H 0.265 0.735 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.439 0.561 38 H 0.438 0.562 39 H 0.414 0.586 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.136 0.864 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.217 -26.780 -3.128 34.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.057 4.057 10 C -0.132 4.132 11 C -0.139 4.139 12 C -0.159 4.159 13 C 0.307 3.693 14 O -0.453 6.453 15 N -0.271 5.271 16 N -0.289 5.289 17 C 0.413 3.587 18 O -0.487 6.487 19 N -0.376 5.376 20 C 0.058 3.942 21 H 0.127 0.873 22 C -0.166 4.166 23 C -0.688 4.688 24 S 2.581 3.419 25 O -0.971 6.971 26 O -0.982 6.982 27 C -0.741 4.741 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.285 0.715 38 H 0.282 0.718 39 H 0.253 0.747 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.186 0.814 43 H 0.179 0.821 44 H 0.154 0.846 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 23.552 -26.773 -2.355 35.736 hybrid contribution -0.538 1.749 -0.231 1.844 sum 23.014 -25.024 -2.586 34.096 Atomic orbital electron populations 1.70058 1.08110 1.27973 1.53044 1.25979 0.95566 1.03323 0.94474 0.85729 0.79427 0.78841 0.79078 1.19345 1.21068 1.17532 1.21578 0.92253 0.93170 1.49631 0.94219 1.19602 0.93757 0.96322 0.96045 1.21336 0.93638 0.96437 1.01748 1.21319 0.94840 0.95750 1.02026 1.21682 0.86654 0.99523 1.08077 1.21624 0.91312 0.81820 0.74548 1.90762 1.70964 1.32693 1.50899 1.44973 0.93892 1.10778 1.77435 1.44560 0.95323 1.08929 1.80106 1.15764 0.84607 0.80442 0.77858 1.91026 1.12365 1.85184 1.60135 1.44879 1.10314 1.03172 1.79187 1.21410 0.97725 0.83157 0.91909 0.87259 1.22594 0.99792 0.87631 1.06605 1.30440 1.13090 1.06062 1.19227 1.08747 0.73938 0.78583 0.80659 1.93592 1.58131 1.79851 1.65532 1.93572 1.39323 1.78582 1.86752 1.31036 1.12479 1.24566 1.06053 0.92632 0.96947 0.96946 0.91961 0.92126 0.92774 0.92984 0.85167 0.84932 0.71527 0.71774 0.74748 0.86230 0.84959 0.81420 0.82054 0.84601 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.00 0.18 5.47 84.65 0.46 0.65 16 3 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 7 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 9 C -0.02 -0.90 4.04 29.85 0.12 -0.78 16 10 C -0.09 -3.12 5.15 30.59 0.16 -2.96 16 11 C -0.10 -2.65 4.50 30.59 0.14 -2.51 16 12 C -0.12 -1.68 5.70 29.85 0.17 -1.51 16 13 C 0.52 8.91 7.95 87.66 0.70 9.61 16 14 O -0.58 -16.09 15.82 -3.05 -0.05 -16.14 16 15 N -0.52 -4.98 6.26 -173.53 -1.09 -6.07 16 16 N -0.54 -7.79 6.26 -184.75 -1.16 -8.95 16 17 C 0.71 10.32 8.65 179.05 1.55 11.86 16 18 O -0.61 -14.11 16.84 -3.97 -0.07 -14.18 16 19 N -0.72 -3.45 5.02 -454.51 -2.28 -5.73 16 20 C 0.17 0.55 2.88 45.68 0.13 0.69 16 21 H 0.11 0.58 7.57 -2.39 -0.02 0.57 16 22 C -0.13 0.49 5.98 31.59 0.19 0.68 16 23 C -0.55 1.29 7.31 72.68 0.53 1.82 16 24 S 2.39 18.23 6.11 -56.49 -0.34 17.88 16 25 O -0.97 -15.00 18.15 -127.49 -2.31 -17.31 16 26 O -0.99 -17.10 18.15 -127.49 -2.31 -19.41 16 27 C -0.61 -3.59 6.91 72.38 0.50 -3.09 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 29 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 30 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 34 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 35 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.44 0.12 6.70 -213.32 -1.43 -1.31 16 38 H 0.44 8.15 8.10 -213.32 -1.73 6.42 16 39 H 0.41 -0.95 6.52 -92.71 -0.60 -1.55 16 40 H 0.12 -0.92 8.12 -2.39 -0.02 -0.94 16 41 H 0.13 -0.91 8.14 -2.38 -0.02 -0.92 16 42 H 0.17 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.16 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.15 0.66 8.07 -2.39 -0.02 0.64 16 Total: -1.00 -97.01 386.46 -5.31 -102.32 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: -2.78 Total: -5.08 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.89 Total: -15.02 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -4.22 Total: -79.54 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -4.74 Total: -67.04 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Atomic # 16 Polarization: 18.23 SS G_CDS: -0.34 Total: 17.88 kcal Total: -97.01 -5.31 -102.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324037545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.416 kcal (2) G-P(sol) polarization free energy of solvation -97.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds