Wall clock time and date at job start Wed Apr 1 2020 04:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.79834 * 2 1 4 4 N 1.46494 * 109.47498 * 56.70231 * 3 2 1 5 5 C 1.36933 * 120.00003 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99838 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47436 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47310 * 119.99921 * 9 7 5 12 12 H 1.48497 * 109.47177 * 239.99924 * 9 7 5 13 13 C 1.54615 * 110.74597 * 236.70344 * 2 1 3 14 14 C 1.54004 * 105.04271 * 263.51614 * 13 2 1 15 15 N 1.47479 * 107.08742 * 1.29896 * 14 13 2 16 16 C 1.34780 * 127.03422 * 154.51448 * 15 14 13 17 17 O 1.21609 * 119.99970 * 180.02562 * 16 15 14 18 18 C 1.47420 * 120.00045 * 0.03307 * 16 15 14 19 19 C 1.36087 * 126.44928 * 179.97438 * 18 16 15 20 20 O 1.34254 * 106.95036 * 179.97438 * 19 18 16 21 21 C 1.34054 * 108.22707 * 359.97438 * 20 19 18 22 22 C 1.50696 * 125.37920 * 179.73615 * 21 20 19 23 23 F 1.39899 * 109.47120 * 270.02580 * 22 21 20 24 24 F 1.39902 * 109.47214 * 30.02475 * 22 21 20 25 25 F 1.39899 * 109.47270 * 150.02658 * 22 21 20 26 26 N 1.29937 * 109.24229 * 0.02562 * 21 20 19 27 27 C 1.48118 * 105.93434 * 334.78369 * 15 14 13 28 28 H 1.09004 * 109.46877 * 183.29407 * 1 2 3 29 29 H 1.08998 * 109.47549 * 303.29777 * 1 2 3 30 30 H 1.09003 * 109.46681 * 63.29969 * 1 2 3 31 31 H 1.09005 * 109.47086 * 176.70638 * 3 2 1 32 32 H 1.09003 * 109.46845 * 296.69961 * 3 2 1 33 33 H 0.96999 * 120.00190 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00151 * 180.02562 * 8 7 5 35 35 H 1.08992 * 110.33119 * 144.62030 * 13 2 1 36 36 H 1.08999 * 110.40665 * 22.44799 * 13 2 1 37 37 H 1.09006 * 109.90752 * 241.93952 * 14 13 2 38 38 H 1.09002 * 109.91377 * 120.66442 * 14 13 2 39 39 H 1.08003 * 126.52759 * 359.92658 * 19 18 16 40 40 H 1.08997 * 110.66641 * 157.50709 * 27 15 14 41 41 H 1.08996 * 110.66027 * 280.62497 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0732 1.4303 0.0000 4 7 1.5379 2.1561 1.1544 5 6 1.8871 3.4636 1.3632 6 1 2.5570 3.9599 0.6766 7 6 1.3802 4.1512 2.4573 8 7 0.5635 3.5466 3.2938 9 14 1.8561 5.9351 2.7417 10 1 2.7790 6.3788 1.6662 11 1 0.6358 6.7812 2.7278 12 1 2.5323 6.0632 4.0576 13 6 2.0776 -0.7938 -1.2085 14 6 2.3763 -2.2015 -0.6600 15 7 1.9871 -2.2038 0.7625 16 6 1.6220 -3.2695 1.5025 17 8 1.3240 -3.1239 2.6725 18 6 1.5841 -4.6115 0.8936 19 6 1.2376 -5.7717 1.5148 20 8 1.3378 -6.7500 0.6010 21 6 1.7364 -6.2035 -0.5564 22 6 1.9775 -6.9563 -1.8394 23 9 3.3111 -7.3759 -1.8903 24 9 1.1353 -8.0722 -1.8907 25 9 1.7100 -6.1197 -2.9283 26 7 1.8880 -4.9231 -0.3955 27 6 2.0733 -0.7944 1.2100 28 1 -0.3633 -1.0260 0.0591 29 1 -0.3634 0.5642 0.8589 30 1 -0.3633 0.4618 -0.9181 31 1 3.1614 1.4057 0.0590 32 1 1.7706 1.9339 -0.9181 33 1 0.9359 1.7106 1.7709 34 1 0.2090 4.0272 4.0581 35 1 2.9910 -0.3315 -1.5827 36 1 1.3293 -0.8464 -1.9993 37 1 3.4404 -2.4185 -0.7542 38 1 1.7936 -2.9438 -1.2055 39 1 0.9395 -5.8841 2.5468 40 1 1.4488 -0.6308 2.0882 41 1 3.1076 -0.5187 1.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324758349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:40 Heat of formation + Delta-G solvation = -130.193691 kcal Electronic energy + Delta-G solvation = -30775.457585 eV Core-core repulsion = 25857.442254 eV Total energy + Delta-G solvation = -4918.015331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.91626 -48.44331 -48.41012 -44.26980 -40.13864 -38.07803 -35.77128 -34.78448 -32.68951 -31.96274 -30.45266 -29.19708 -27.52468 -26.91919 -25.83532 -24.24772 -23.23360 -22.73095 -21.96350 -20.64695 -19.39632 -19.13985 -18.93925 -18.63085 -17.73567 -17.44313 -17.10299 -16.66641 -15.91747 -15.64622 -15.21567 -15.18713 -14.79471 -14.62583 -14.51664 -14.50978 -14.46585 -14.34673 -13.89551 -13.63849 -13.54652 -13.36835 -12.96758 -12.55195 -12.35379 -12.19342 -12.09692 -11.84085 -11.58415 -11.18788 -11.00110 -10.83365 -10.52875 -10.45923 -10.28015 -10.27116 -10.00319 -9.92316 -9.62441 -8.87887 -8.64921 -6.91133 -5.75187 -3.04000 0.29131 0.94066 1.12472 2.05273 2.59232 2.79856 2.96920 3.44373 3.45075 3.49897 3.51580 3.52238 3.93390 4.11400 4.52812 4.58715 4.75406 4.78676 4.85626 5.00268 5.07637 5.39128 5.46776 5.59917 5.68892 5.81628 5.91360 6.00305 6.06301 6.10891 6.12561 6.26988 6.39177 6.45998 6.53599 6.66588 6.76626 6.84789 7.45033 7.71702 7.93128 8.43370 9.54843 10.11982 10.46408 11.47602 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.002267 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.575586 B =12346.607133 C =12993.481693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.125 4.125 14 C 0.101 3.899 15 N -0.598 5.598 16 C 0.613 3.387 17 O -0.529 6.529 18 C -0.057 4.057 19 C 0.055 3.945 20 O -0.168 6.168 21 C 0.088 3.912 22 C 0.588 3.412 23 F -0.153 7.153 24 F -0.156 7.156 25 F -0.141 7.141 26 N -0.385 5.385 27 C 0.120 3.880 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.092 0.908 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -25.386 -11.268 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.164 4.164 14 C -0.021 4.021 15 N -0.330 5.330 16 C 0.400 3.600 17 O -0.406 6.406 18 C -0.179 4.179 19 C -0.019 4.019 20 O -0.051 6.051 21 C -0.121 4.121 22 C 0.532 3.468 23 F -0.134 7.134 24 F -0.137 7.137 25 F -0.122 7.122 26 N -0.117 5.117 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.561 -24.870 -11.142 27.372 hybrid contribution -0.099 0.325 0.750 0.823 sum 2.463 -24.545 -10.393 26.768 Atomic orbital electron populations 1.21705 0.93427 1.00568 1.02956 1.21814 0.96647 0.96045 0.93535 1.20628 0.95652 0.87744 0.91845 1.42421 1.56759 1.10900 1.27552 1.19251 1.22828 0.87908 1.07044 0.91150 1.24738 1.00061 0.98312 0.97848 1.69662 1.36085 1.36185 1.16101 0.86133 0.77528 0.85038 0.77563 1.20598 1.21924 1.21916 1.22619 1.02031 0.93838 0.97881 1.22318 1.00505 0.98606 0.80713 1.48583 1.64285 1.07754 1.12331 1.16096 0.78130 0.80917 0.84897 1.90895 1.50192 1.84409 1.15054 1.22050 1.09401 0.97005 0.89489 1.25772 0.96640 0.84091 0.95394 1.84405 1.64167 1.38302 1.18208 1.25532 1.07975 0.89596 0.89047 1.15957 0.75174 0.76193 0.79503 1.93328 1.33703 1.90027 1.96314 1.93309 1.71014 1.52972 1.96416 1.93335 1.93520 1.71223 1.54101 1.70809 1.13165 1.10401 1.17349 1.22634 1.02145 0.76868 0.98440 0.93831 0.91071 0.92600 0.96026 0.95768 0.78038 0.93541 0.90205 0.90499 0.91508 0.89135 0.73528 0.88950 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.31 37.16 0.31 -1.78 16 2 C -0.08 -1.24 0.65 -152.82 -0.10 -1.33 16 3 C 0.17 3.24 5.11 -4.04 -0.02 3.22 16 4 N -0.73 -17.96 5.16 -59.91 -0.31 -18.27 16 5 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 9 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 C -0.13 -1.52 6.09 -25.36 -0.15 -1.67 16 14 C 0.10 1.21 6.26 -2.98 -0.02 1.19 16 15 N -0.60 -8.61 3.19 -171.24 -0.55 -9.15 16 16 C 0.61 8.97 7.89 -12.52 -0.10 8.87 16 17 O -0.53 -9.21 17.10 5.27 0.09 -9.12 16 18 C -0.06 -0.65 6.84 -83.02 -0.57 -1.22 16 19 C 0.06 0.46 11.94 29.96 0.36 0.81 16 20 O -0.17 -1.39 10.70 6.51 0.07 -1.32 16 21 C 0.09 0.80 7.53 -13.08 -0.10 0.70 16 22 C 0.59 4.47 3.57 36.00 0.13 4.59 16 23 F -0.15 -1.16 17.30 2.25 0.04 -1.12 16 24 F -0.16 -1.12 17.28 2.25 0.04 -1.08 16 25 F -0.14 -1.13 17.24 2.25 0.04 -1.09 16 26 N -0.39 -4.17 8.46 -7.65 -0.06 -4.23 16 27 C 0.12 1.97 5.65 -2.31 -0.01 1.96 16 28 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.07 1.35 6.69 -51.93 -0.35 1.00 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.38 9.99 6.21 -40.82 -0.25 9.74 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.04 6.15 -51.93 -0.32 0.72 16 39 H 0.25 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.09 1.75 7.75 -51.93 -0.40 1.35 16 41 H 0.08 1.32 8.01 -51.93 -0.42 0.91 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -32.23 360.99 -4.66 -36.88 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.63 Total: 4.99 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.52 Total: 8.12 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.20 Total: -59.06 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.16 Total: -10.44 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.12 Total: -3.30 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.23 -4.66 -36.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324758349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.309 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds