Wall clock time and date at job start Wed Apr 1 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 110.79834 * 2 1 4 4 N 1.46494 * 109.47498 * 56.70231 * 3 2 1 5 5 C 1.36933 * 120.00003 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99838 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99824 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47436 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47310 * 119.99921 * 9 7 5 12 12 H 1.48497 * 109.47177 * 239.99924 * 9 7 5 13 13 C 1.54615 * 110.74597 * 236.70344 * 2 1 3 14 14 C 1.54004 * 105.04271 * 263.51614 * 13 2 1 15 15 N 1.47479 * 107.08742 * 1.29896 * 14 13 2 16 16 C 1.34780 * 127.03422 * 154.51448 * 15 14 13 17 17 O 1.21609 * 119.99970 * 180.02562 * 16 15 14 18 18 C 1.47420 * 120.00045 * 0.03307 * 16 15 14 19 19 C 1.36087 * 126.44928 * 179.97438 * 18 16 15 20 20 O 1.34254 * 106.95036 * 179.97438 * 19 18 16 21 21 C 1.34054 * 108.22707 * 359.97438 * 20 19 18 22 22 C 1.50696 * 125.37920 * 179.73615 * 21 20 19 23 23 F 1.39899 * 109.47120 * 270.02580 * 22 21 20 24 24 F 1.39902 * 109.47214 * 30.02475 * 22 21 20 25 25 F 1.39899 * 109.47270 * 150.02658 * 22 21 20 26 26 N 1.29937 * 109.24229 * 0.02562 * 21 20 19 27 27 C 1.48118 * 105.93434 * 334.78369 * 15 14 13 28 28 H 1.09004 * 109.46877 * 183.29407 * 1 2 3 29 29 H 1.08998 * 109.47549 * 303.29777 * 1 2 3 30 30 H 1.09003 * 109.46681 * 63.29969 * 1 2 3 31 31 H 1.09005 * 109.47086 * 176.70638 * 3 2 1 32 32 H 1.09003 * 109.46845 * 296.69961 * 3 2 1 33 33 H 0.96999 * 120.00190 * 0.02562 * 4 3 2 34 34 H 0.96996 * 120.00151 * 180.02562 * 8 7 5 35 35 H 1.08992 * 110.33119 * 144.62030 * 13 2 1 36 36 H 1.08999 * 110.40665 * 22.44799 * 13 2 1 37 37 H 1.09006 * 109.90752 * 241.93952 * 14 13 2 38 38 H 1.09002 * 109.91377 * 120.66442 * 14 13 2 39 39 H 1.08003 * 126.52759 * 359.92658 * 19 18 16 40 40 H 1.08997 * 110.66641 * 157.50709 * 27 15 14 41 41 H 1.08996 * 110.66027 * 280.62497 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0732 1.4303 0.0000 4 7 1.5379 2.1561 1.1544 5 6 1.8871 3.4636 1.3632 6 1 2.5570 3.9599 0.6766 7 6 1.3802 4.1512 2.4573 8 7 0.5635 3.5466 3.2938 9 14 1.8561 5.9351 2.7417 10 1 2.7790 6.3788 1.6662 11 1 0.6358 6.7812 2.7278 12 1 2.5323 6.0632 4.0576 13 6 2.0776 -0.7938 -1.2085 14 6 2.3763 -2.2015 -0.6600 15 7 1.9871 -2.2038 0.7625 16 6 1.6220 -3.2695 1.5025 17 8 1.3240 -3.1239 2.6725 18 6 1.5841 -4.6115 0.8936 19 6 1.2376 -5.7717 1.5148 20 8 1.3378 -6.7500 0.6010 21 6 1.7364 -6.2035 -0.5564 22 6 1.9775 -6.9563 -1.8394 23 9 3.3111 -7.3759 -1.8903 24 9 1.1353 -8.0722 -1.8907 25 9 1.7100 -6.1197 -2.9283 26 7 1.8880 -4.9231 -0.3955 27 6 2.0733 -0.7944 1.2100 28 1 -0.3633 -1.0260 0.0591 29 1 -0.3634 0.5642 0.8589 30 1 -0.3633 0.4618 -0.9181 31 1 3.1614 1.4057 0.0590 32 1 1.7706 1.9339 -0.9181 33 1 0.9359 1.7106 1.7709 34 1 0.2090 4.0272 4.0581 35 1 2.9910 -0.3315 -1.5827 36 1 1.3293 -0.8464 -1.9993 37 1 3.4404 -2.4185 -0.7542 38 1 1.7936 -2.9438 -1.2055 39 1 0.9395 -5.8841 2.5468 40 1 1.4488 -0.6308 2.0882 41 1 3.1076 -0.5187 1.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324758349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:39 Heat of formation + Delta-G solvation = -152.636270 kcal Electronic energy + Delta-G solvation = -30776.430768 eV Core-core repulsion = 25857.442254 eV Total energy + Delta-G solvation = -4918.988515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.51009 -49.02452 -49.01128 -45.00300 -41.31162 -39.32309 -36.68476 -36.33523 -34.31483 -32.76720 -32.15310 -30.45768 -28.43373 -27.95387 -27.44087 -25.59134 -24.50407 -23.46536 -23.33996 -21.51526 -20.22184 -19.99830 -19.79591 -19.62918 -19.10239 -18.38620 -18.15972 -17.61938 -17.17354 -16.77378 -16.47668 -15.81617 -15.79416 -15.64246 -15.55873 -15.38182 -15.21292 -15.10851 -15.10500 -15.09469 -14.76262 -14.53839 -14.18656 -13.91540 -13.61928 -13.49119 -13.08226 -13.03132 -12.92524 -12.79874 -12.71980 -12.24863 -12.09883 -12.01357 -11.73400 -11.52373 -11.43048 -11.36151 -10.93201 -10.77998 -9.81114 -8.95935 -7.92321 -5.20485 -0.40607 0.26785 0.28827 1.33979 1.48410 1.49008 1.59023 1.71403 1.92779 2.02085 2.57675 2.83934 2.91729 3.02933 3.34499 3.41281 3.54820 3.62494 3.80772 3.85309 4.11166 4.20994 4.28252 4.33600 4.34494 4.37957 4.67379 4.70534 4.76669 4.94284 4.96377 5.04282 5.06490 5.12212 5.27572 5.34342 5.46335 5.53527 5.73417 6.29711 6.34971 6.80686 7.36396 8.13254 8.35181 9.31562 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.002267 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.575586 B =12346.607133 C =12993.481693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.744 5.744 5 C -0.238 4.238 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.296 1.296 13 C -0.114 4.114 14 C 0.105 3.895 15 N -0.601 5.601 16 C 0.611 3.389 17 O -0.568 6.568 18 C -0.089 4.089 19 C 0.089 3.911 20 O -0.160 6.160 21 C 0.091 3.909 22 C 0.597 3.403 23 F -0.151 7.151 24 F -0.151 7.151 25 F -0.142 7.142 26 N -0.397 5.397 27 C 0.125 3.875 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.032 0.968 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.280 0.720 40 H 0.055 0.945 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -26.743 -13.249 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C 0.042 3.958 4 N -0.387 5.387 5 C -0.370 4.370 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.224 1.224 13 C -0.152 4.152 14 C -0.016 4.016 15 N -0.331 5.331 16 C 0.399 3.601 17 O -0.448 6.448 18 C -0.210 4.210 19 C 0.014 3.986 20 O -0.043 6.043 21 C -0.120 4.120 22 C 0.541 3.459 23 F -0.132 7.132 24 F -0.132 7.132 25 F -0.123 7.123 26 N -0.129 5.129 27 C 0.002 3.998 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.296 0.704 40 H 0.074 0.926 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.418 -26.242 -13.202 29.574 hybrid contribution -0.336 0.646 1.324 1.511 sum 3.082 -25.596 -11.878 28.386 Atomic orbital electron populations 1.21602 0.93862 1.00531 1.01811 1.21676 0.96147 0.94367 0.95169 1.20798 0.95800 0.89282 0.89963 1.42647 1.56692 1.10484 1.28908 1.19682 1.21677 0.89110 1.06534 0.90345 1.25557 1.00872 1.02439 0.98195 1.69831 1.37938 1.37698 1.16776 0.85089 0.77117 0.80237 0.77416 1.18806 1.22266 1.22395 1.22614 1.03140 0.93046 0.96448 1.22437 1.01441 0.98670 0.79079 1.48635 1.64314 1.06810 1.13379 1.16485 0.77115 0.81974 0.84510 1.90866 1.51922 1.85255 1.16743 1.21624 1.12772 0.96176 0.90439 1.26353 0.93285 0.82877 0.96038 1.84458 1.63855 1.37989 1.18014 1.25741 1.07370 0.89245 0.89608 1.15765 0.75211 0.76075 0.78856 1.93335 1.33643 1.89975 1.96250 1.93323 1.70909 1.52668 1.96340 1.93335 1.93543 1.71349 1.54085 1.70694 1.13704 1.11315 1.17138 1.22370 1.00988 0.78798 0.97608 0.92947 0.94745 0.91389 0.95346 0.95019 0.79320 0.94186 0.88525 0.88607 0.90214 0.88209 0.70447 0.92589 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.31 71.98 0.60 -3.30 16 2 C -0.07 -2.22 0.65 -51.09 -0.03 -2.25 16 3 C 0.17 6.34 5.11 86.38 0.44 6.78 16 4 N -0.74 -37.19 5.16 -343.45 -1.77 -38.96 16 5 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 8 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 9 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 13 C -0.11 -2.47 6.09 31.48 0.19 -2.27 16 14 C 0.11 2.29 6.26 86.53 0.54 2.83 16 15 N -0.60 -17.08 3.19 -813.94 -2.60 -19.68 16 16 C 0.61 17.81 7.89 86.66 0.68 18.49 16 17 O -0.57 -20.33 17.10 -4.06 -0.07 -20.40 16 18 C -0.09 -1.90 6.84 40.41 0.28 -1.63 16 19 C 0.09 1.27 11.94 67.32 0.80 2.07 16 20 O -0.16 -2.24 10.70 0.37 0.00 -2.23 16 21 C 0.09 1.45 7.53 88.39 0.67 2.11 16 22 C 0.60 7.74 3.57 71.23 0.25 8.00 16 23 F -0.15 -1.97 17.30 44.97 0.78 -1.19 16 24 F -0.15 -1.83 17.28 44.97 0.78 -1.06 16 25 F -0.14 -1.98 17.24 44.97 0.78 -1.21 16 26 N -0.40 -7.80 8.46 -293.03 -2.48 -10.28 16 27 C 0.12 4.18 5.65 86.61 0.49 4.67 16 28 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.03 1.35 6.69 -2.39 -0.02 1.34 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.03 1.05 8.10 -2.38 -0.02 1.04 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.37 20.27 6.21 -92.71 -0.58 19.69 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.10 1.82 7.85 -2.39 -0.02 1.80 16 36 H 0.10 1.77 7.87 -2.39 -0.02 1.75 16 37 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.10 2.04 6.15 -2.39 -0.01 2.02 16 39 H 0.28 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 41 H 0.07 2.53 8.01 -2.39 -0.02 2.52 16 Total: -1.00 -71.15 360.99 4.47 -66.68 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.53 Total: 20.87 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.22 Total: 19.08 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.57 Total: -129.07 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.07 Total: -22.63 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 2.33 Total: -3.46 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -71.15 4.47 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324758349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.960 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds