Wall clock time and date at job start Wed Apr 1 2020 04:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99602 * 2 1 4 4 C 1.52998 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47338 * 64.99959 * 4 3 2 6 6 C 1.46499 * 120.00471 * 84.99755 * 5 4 3 7 7 C 1.50701 * 109.47260 * 275.00665 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27562 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 S 1.65603 * 119.99916 * 265.00339 * 5 4 3 16 16 O 1.42100 * 106.40487 * 23.53428 * 15 5 4 17 17 O 1.42102 * 106.40550 * 156.46009 * 15 5 4 18 18 N 1.65605 * 107.21743 * 269.99767 * 15 5 4 19 19 C 1.47159 * 120.97913 * 89.99817 * 18 15 5 20 20 C 1.53297 * 108.38262 * 230.51314 * 19 18 15 21 21 O 1.42966 * 109.22421 * 307.70064 * 20 19 18 22 22 C 1.42963 * 114.16392 * 62.57887 * 21 20 19 23 23 C 1.53010 * 109.50898 * 177.49713 * 22 21 20 24 24 C 1.47201 * 109.51242 * 57.34980 * 22 21 20 25 25 N 6.27243 * 155.72708 * 323.17379 * 2 1 3 26 26 C 1.47151 * 120.98132 * 269.71952 * 18 15 5 27 27 H 1.09000 * 109.47372 * 60.00371 * 1 2 3 28 28 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47213 * 299.99595 * 1 2 3 30 30 H 1.08995 * 109.47108 * 59.99421 * 3 2 1 31 31 H 1.09005 * 109.47287 * 299.99898 * 3 2 1 32 32 H 1.09005 * 109.46668 * 304.99673 * 4 3 2 33 33 H 1.08999 * 109.46953 * 185.00297 * 4 3 2 34 34 H 1.09000 * 109.47197 * 154.99670 * 6 5 4 35 35 H 1.09007 * 109.46342 * 35.00243 * 6 5 4 36 36 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.68386 * 350.23447 * 19 18 15 38 38 H 1.08997 * 109.68009 * 110.75502 * 19 18 15 39 39 H 1.08993 * 109.51141 * 67.62397 * 20 19 18 40 40 H 1.08999 * 109.51338 * 187.77976 * 20 19 18 41 41 H 1.09001 * 109.46793 * 60.00062 * 23 22 21 42 42 H 1.08999 * 109.47001 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.46700 * 299.99959 * 23 22 21 44 44 H 1.09004 * 109.67844 * 249.21112 * 26 18 15 45 45 H 1.08997 * 109.68161 * 9.76327 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1808 1.3891 -2.4462 7 6 2.8683 1.5681 -3.1647 8 1 1.9711 1.1129 -2.7719 9 6 2.8140 2.3079 -4.3269 10 7 3.9065 2.8620 -4.8054 11 14 1.1885 2.5233 -5.2218 12 1 0.2141 3.1939 -4.3238 13 1 1.3974 3.3552 -6.4341 14 1 0.6617 1.1929 -5.6186 15 16 4.2414 -1.0687 -1.3190 16 8 3.4688 -1.6437 -0.2743 17 8 4.1045 -1.4425 -2.6832 18 7 5.8287 -1.3236 -0.9214 19 6 6.2338 -1.5418 0.4764 20 6 7.3930 -0.5915 0.7977 21 8 8.4146 -0.7442 -0.1907 22 6 8.0034 -0.3988 -1.5156 23 6 9.1893 -0.5407 -2.4720 24 6 7.5198 0.9914 -1.5335 25 7 7.1470 2.0640 -1.5455 26 6 6.8748 -1.3447 -1.9561 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0890 34 1 4.8938 0.8983 -3.1086 35 1 4.5698 2.3638 -2.1517 36 1 3.8684 3.3821 -5.6232 37 1 5.3938 -1.3332 1.1389 38 1 6.5574 -2.5742 0.6079 39 1 7.0326 0.4371 0.7928 40 1 7.7986 -0.8314 1.7806 41 1 9.5449 -1.5710 -2.4594 42 1 8.8752 -0.2768 -3.4819 43 1 9.9925 0.1248 -2.1561 44 1 7.2625 -2.3576 -2.0655 45 1 6.4594 -1.0056 -2.9051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364958391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:57 Heat of formation + Delta-G solvation = -142.048780 kcal Electronic energy + Delta-G solvation = -31816.229964 eV Core-core repulsion = 27575.001248 eV Total energy + Delta-G solvation = -4241.228715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02701 -39.06810 -38.25356 -37.26725 -36.97256 -36.74989 -35.94869 -34.58669 -34.12238 -30.97546 -29.63893 -28.65940 -27.07244 -27.05328 -24.75294 -24.56756 -23.60131 -23.10722 -20.10770 -19.05513 -18.91518 -18.72893 -18.28248 -17.73368 -17.42162 -16.76372 -16.54463 -16.41170 -16.25225 -16.02479 -15.68343 -15.41113 -15.07777 -14.88853 -14.55504 -14.47156 -14.10141 -13.73956 -13.72258 -13.60773 -13.40867 -13.28071 -13.22344 -13.08439 -13.01070 -12.93741 -12.87769 -12.74278 -12.67150 -12.59913 -12.58173 -12.32274 -12.16076 -11.85273 -11.68689 -11.64514 -11.39239 -10.62624 -10.45857 -9.97544 -9.80638 -8.20500 -6.31522 -0.37705 1.32412 1.36111 1.43062 1.55370 1.71703 1.97450 2.35921 2.57593 2.66470 2.78262 2.97977 3.09246 3.31217 3.55334 3.73185 3.92708 3.99425 4.14158 4.20224 4.21820 4.26281 4.33977 4.51663 4.54751 4.57992 4.62923 4.63529 4.77750 4.80578 4.85434 4.88505 4.91675 5.00451 5.01993 5.20932 5.30126 5.37134 5.53370 5.68875 5.88832 5.93239 6.11597 6.36189 6.49234 6.76935 7.36169 8.86342 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.005749 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.788478 B = 4869.606925 C = 6299.828192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.035 3.965 4 C 0.136 3.864 5 N -0.993 5.993 6 C 0.293 3.707 7 C -0.539 4.539 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.922 5.922 11 Si 0.949 3.051 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.278 1.278 15 S 2.784 3.216 16 O -0.974 6.974 17 O -1.009 7.009 18 N -1.016 6.016 19 C 0.082 3.918 20 C 0.041 3.959 21 O -0.342 6.342 22 C 0.211 3.789 23 C -0.136 4.136 24 C 0.178 3.822 25 N -0.431 5.431 26 C 0.098 3.902 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.002 0.998 35 H 0.020 0.980 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.040 0.960 40 H 0.152 0.848 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -8.926 12.982 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.043 4.043 4 C 0.010 3.990 5 N -0.833 5.833 6 C 0.169 3.831 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.187 4.187 10 N -0.562 5.562 11 Si 0.774 3.226 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.203 1.203 15 S 2.794 3.206 16 O -0.958 6.958 17 O -0.993 6.993 18 N -0.858 5.858 19 C -0.042 4.042 20 C -0.037 4.037 21 O -0.258 6.258 22 C 0.166 3.834 23 C -0.194 4.194 24 C -0.142 4.142 25 N -0.109 5.109 26 C -0.029 4.029 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.058 0.942 40 H 0.170 0.830 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.156 0.844 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.186 -8.114 12.669 17.128 hybrid contribution -1.245 0.889 -0.954 1.803 sum 6.940 -7.224 11.716 15.415 Atomic orbital electron populations 1.22851 0.80878 1.03097 1.00259 1.88025 1.20325 1.27830 1.95436 1.23155 0.94888 0.85233 1.01069 1.21263 0.92751 1.00052 0.84925 1.57671 1.81035 1.26884 1.17697 1.18369 0.94718 0.89696 0.80298 1.21813 0.95719 1.31605 1.08742 0.92826 1.25706 0.99754 0.95410 0.97785 1.70034 1.29006 1.34766 1.22360 0.85758 0.80352 0.78097 0.78417 1.18966 1.20226 1.20313 1.01801 0.73263 0.73114 0.72390 1.93566 1.67611 1.76462 1.58147 1.93546 1.85906 1.82656 1.37202 1.58511 1.25185 1.87099 1.14973 1.22398 0.99303 1.02677 0.79835 1.23291 0.88819 0.98006 0.93577 1.88109 1.36826 1.86438 1.14434 1.19653 0.96547 0.79778 0.87467 1.21900 0.94155 1.06793 0.96560 1.30476 0.93475 0.96253 0.93991 1.81263 1.08232 1.14600 1.06768 1.22433 0.87535 1.02531 0.90387 0.95282 0.89227 0.91993 0.90369 0.93651 0.88792 0.89072 0.97989 0.96235 0.92650 0.88193 0.87032 0.94163 0.83006 0.86311 0.89761 0.89880 0.84374 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -15.48 8.76 -130.61 -1.14 -16.63 16 3 C 0.03 1.26 6.03 71.98 0.43 1.69 16 4 C 0.14 4.83 5.84 86.38 0.50 5.34 16 5 N -0.99 -42.50 2.80 -519.84 -1.46 -43.96 16 6 C 0.29 15.30 4.76 85.63 0.41 15.71 16 7 C -0.54 -31.17 8.38 25.60 0.21 -30.95 16 8 H 0.05 3.12 6.77 -2.91 -0.02 3.10 16 9 C 0.01 0.75 5.46 84.65 0.46 1.21 16 10 N -0.92 -55.77 13.29 21.45 0.28 -55.48 16 11 Si 0.95 45.84 29.54 68.60 2.03 47.86 16 12 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 15 S 2.78 113.25 5.98 -56.49 -0.34 112.91 16 16 O -0.97 -40.13 14.09 -120.24 -1.69 -41.82 16 17 O -1.01 -50.14 15.90 -128.00 -2.04 -52.17 16 18 N -1.02 -29.32 3.13 -510.85 -1.60 -30.92 16 19 C 0.08 1.64 6.57 86.35 0.57 2.21 16 20 C 0.04 0.71 6.69 72.08 0.48 1.19 16 21 O -0.34 -6.52 10.21 -148.98 -1.52 -8.04 16 22 C 0.21 4.76 1.06 -12.36 -0.01 4.75 16 23 C -0.14 -2.10 8.81 71.99 0.63 -1.47 16 24 C 0.18 5.64 12.37 89.45 1.11 6.75 16 25 N -0.43 -16.82 17.83 20.00 0.36 -16.46 16 26 C 0.10 2.47 5.25 86.49 0.45 2.93 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.91 6.24 -2.38 -0.01 1.90 16 32 H 0.09 2.79 7.61 -2.38 -0.02 2.77 16 33 H 0.09 3.08 8.00 -2.39 -0.02 3.06 16 34 H 0.00 0.12 7.61 -2.39 -0.02 0.11 16 35 H 0.02 1.09 7.67 -2.38 -0.02 1.07 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.10 2.00 7.25 -2.39 -0.02 1.98 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 0.87 7.02 -2.39 -0.02 0.85 16 40 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.08 2.56 7.23 -2.39 -0.02 2.54 16 Total: -1.00 -82.15 380.21 0.38 -81.78 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.00 Total: 11.55 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.50 Total: 11.39 kcal Atomic # 7 Polarization: -144.40 SS G_CDS: -2.42 Total: -146.82 kcal Atomic # 8 Polarization: -112.27 SS G_CDS: -6.39 Total: -118.67 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 113.25 SS G_CDS: -0.34 Total: 112.91 kcal Total: -82.15 0.38 -81.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364958391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.274 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds