Wall clock time and date at job start Wed Apr 1 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 59.99804 * 11 9 7 13 13 H 1.48493 * 109.47270 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47378 * 300.00156 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.47157 * 120.98336 * 89.99976 * 18 15 5 20 20 C 1.53297 * 108.38516 * 129.44019 * 19 18 15 21 21 O 1.42962 * 109.22418 * 52.30215 * 20 19 18 22 22 C 1.42966 * 114.16455 * 297.42299 * 21 20 19 23 23 C 1.53004 * 109.50978 * 182.50061 * 22 21 20 24 24 C 1.47201 * 109.51144 * 302.65102 * 22 21 20 25 25 N 8.23209 * 127.19919 * 316.40360 * 2 1 3 26 26 C 1.47154 * 120.98426 * 269.71724 * 18 15 5 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 33 33 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 34 34 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 35 35 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 36 36 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.67978 * 249.16543 * 19 18 15 38 38 H 1.08997 * 109.67817 * 9.71777 * 19 18 15 39 39 H 1.08999 * 109.51315 * 172.22780 * 20 19 18 40 40 H 1.09007 * 109.51371 * 292.32812 * 20 19 18 41 41 H 1.09005 * 109.47239 * 59.99897 * 23 22 21 42 42 H 1.09004 * 109.46903 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47222 * 300.00197 * 23 22 21 44 44 H 1.09004 * 109.67711 * 350.28363 * 26 18 15 45 45 H 1.08995 * 109.68222 * 110.83574 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 0.3447 -2.7451 -3.7687 13 1 0.7460 -4.8265 -2.5905 14 1 -0.2724 -2.9552 -1.4330 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 7.0491 0.8581 -2.9828 20 6 8.0528 1.6909 -3.7884 21 8 8.5864 2.7216 -2.9539 22 6 7.6130 3.6583 -2.4858 23 6 8.3048 4.7440 -1.6590 24 6 6.9307 4.2742 -3.6355 25 7 6.4060 4.7488 -4.5217 26 6 6.5869 2.9294 -1.6181 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.9786 2.1764 0.0890 33 1 3.8515 0.5681 0.8409 34 1 4.7294 -1.1822 -2.1360 35 1 4.2774 -1.3374 -0.4214 36 1 3.2392 -4.5427 -1.9065 37 1 7.5731 0.3044 -2.2037 38 1 6.5340 0.1623 -3.6451 39 1 8.8620 1.0489 -4.1366 40 1 7.5494 2.1391 -4.6451 41 1 9.0375 5.2611 -2.2786 42 1 7.5621 5.4580 -1.3028 43 1 8.8077 4.2867 -0.8069 44 1 5.7657 3.6046 -1.3772 45 1 7.0635 2.5878 -0.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364958392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:00 Heat of formation + Delta-G solvation = -109.822621 kcal Electronic energy + Delta-G solvation = -31152.590593 eV Core-core repulsion = 26912.759309 eV Total energy + Delta-G solvation = -4239.831284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.24083 -37.54405 -36.83786 -36.34104 -35.33540 -35.18426 -34.98279 -33.41270 -32.42367 -29.39207 -28.85214 -26.64373 -26.25520 -25.39697 -23.94902 -22.71057 -22.54168 -21.78646 -18.83830 -18.21819 -17.50581 -17.10324 -16.74511 -16.37099 -15.75402 -15.54068 -15.40850 -15.13751 -14.78837 -14.55449 -14.40099 -14.15750 -14.14424 -13.68484 -13.44293 -12.86960 -12.81127 -12.62813 -12.52721 -12.43119 -12.40905 -12.14824 -11.98622 -11.91800 -11.91457 -11.74454 -11.50327 -11.32827 -11.17180 -10.94776 -10.85393 -10.79793 -10.60004 -10.46366 -10.27549 -9.93611 -9.60150 -9.03339 -8.72407 -8.26980 -8.08454 -5.90068 -3.84887 0.97106 2.39417 2.55099 3.22466 3.38794 3.39901 3.43718 3.46918 3.55320 3.90961 4.23425 4.44672 4.56605 4.57844 4.68849 4.81346 4.99262 5.07440 5.19627 5.26829 5.30094 5.35804 5.38309 5.46646 5.48561 5.59470 5.65202 5.70793 5.81308 5.83460 5.87791 5.95601 5.96650 6.28496 6.30813 6.35251 6.52541 6.66783 7.24727 7.29629 7.44145 7.62650 7.92680 8.10838 8.37659 9.14684 9.74274 11.20415 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.004097 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.569726 B = 6831.908511 C = 7558.313968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.333 6.333 3 C 0.040 3.960 4 C 0.139 3.861 5 N -0.984 5.984 6 C 0.261 3.739 7 C -0.485 4.485 8 H 0.070 0.930 9 C 0.057 3.943 10 N -0.907 5.907 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.277 1.277 15 S 2.772 3.228 16 O -0.955 6.955 17 O -0.992 6.992 18 N -1.018 6.018 19 C 0.084 3.916 20 C 0.044 3.956 21 O -0.350 6.350 22 C 0.207 3.793 23 C -0.136 4.136 24 C 0.179 3.821 25 N -0.402 5.402 26 C 0.100 3.900 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 12.863 5.813 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.250 6.250 3 C -0.039 4.039 4 C 0.012 3.988 5 N -0.826 5.826 6 C 0.140 3.860 7 C -0.525 4.525 8 H 0.088 0.912 9 C -0.143 4.143 10 N -0.549 5.549 11 Si 0.718 3.282 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.203 1.203 15 S 2.782 3.218 16 O -0.938 6.938 17 O -0.976 6.976 18 N -0.856 5.856 19 C -0.041 4.041 20 C -0.034 4.034 21 O -0.266 6.266 22 C 0.162 3.838 23 C -0.195 4.195 24 C -0.141 4.141 25 N -0.079 5.079 26 C -0.028 4.028 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.977 13.506 3.819 16.661 hybrid contribution -1.127 -0.687 0.202 1.335 sum 7.850 12.819 4.021 15.560 Atomic orbital electron populations 1.22655 0.83604 1.02251 0.98279 1.88543 1.17231 1.24564 1.94656 1.22912 0.94972 0.86723 0.99286 1.21064 0.92732 0.97015 0.88022 1.57789 1.77814 1.19512 1.27531 1.19075 0.98062 0.71118 0.97760 1.21452 0.95837 0.91964 1.43208 0.91235 1.24819 0.96573 0.96758 0.96148 1.69899 1.31403 1.02250 1.51299 0.86722 0.85167 0.77296 0.79015 1.20507 1.21627 1.20321 1.02339 0.72342 0.72868 0.74263 1.93629 1.83980 1.70331 1.45881 1.93528 1.73668 1.43323 1.87048 1.58751 1.25703 1.34422 1.66755 1.22140 0.91405 0.92226 0.98351 1.23127 0.98361 0.89605 0.92330 1.88101 1.31953 1.38644 1.67945 1.19279 0.88698 0.89346 0.86448 1.21801 1.01515 0.96156 0.99994 1.29799 0.94429 0.94486 0.95338 1.81091 1.08035 1.08540 1.10201 1.22007 0.98191 0.87975 0.94585 0.95076 0.90051 0.95556 0.93667 0.93908 0.90665 0.89818 0.94991 0.94648 0.93130 0.89637 0.87192 0.86452 0.92580 0.90486 0.89693 0.89142 0.87490 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.90 101.05 1.10 1.61 16 2 O -0.33 -6.81 6.62 -35.23 -0.23 -7.05 16 3 C 0.04 0.70 6.22 37.16 0.23 0.93 16 4 C 0.14 2.25 5.81 -4.04 -0.02 2.22 16 5 N -0.98 -19.37 2.86 -115.67 -0.33 -19.70 16 6 C 0.26 6.28 5.04 -5.19 -0.03 6.25 16 7 C -0.48 -13.19 7.22 -34.44 -0.25 -13.43 16 8 H 0.07 1.92 6.09 -52.49 -0.32 1.60 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.91 -26.31 13.29 55.43 0.74 -25.57 16 11 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 S 2.77 53.69 6.07 -107.50 -0.65 53.03 16 16 O -0.95 -22.54 15.73 -57.17 -0.90 -23.44 16 17 O -0.99 -19.80 15.72 -57.17 -0.90 -20.70 16 18 N -1.02 -14.60 3.15 -113.30 -0.36 -14.95 16 19 C 0.08 1.07 6.71 -3.53 -0.02 1.05 16 20 C 0.04 0.48 6.69 37.31 0.25 0.73 16 21 O -0.35 -3.66 10.21 -35.23 -0.36 -4.02 16 22 C 0.21 2.11 1.05 -93.47 -0.10 2.01 16 23 C -0.14 -0.84 8.81 37.16 0.33 -0.51 16 24 C 0.18 2.45 12.34 -20.83 -0.26 2.20 16 25 N -0.40 -6.59 18.52 42.07 0.78 -5.81 16 26 C 0.10 1.06 5.33 -3.75 -0.02 1.04 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 33 H 0.08 1.27 8.00 -51.93 -0.42 0.86 16 34 H 0.03 0.81 7.61 -51.93 -0.40 0.42 16 35 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.60 6.94 -51.93 -0.36 1.24 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.70 7.02 -51.92 -0.36 0.34 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 1.12 6.92 -51.93 -0.36 0.76 16 45 H 0.10 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -36.01 380.65 -7.20 -43.21 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.81 Total: -3.30 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 1.11 Total: 5.59 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: 0.83 Total: -66.03 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -2.39 Total: -55.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 53.69 SS G_CDS: -0.65 Total: 53.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.01 -7.20 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364958392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.616 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds