Wall clock time and date at job start Wed Apr 1 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46504 * 120.00489 * 275.00228 * 5 4 3 7 7 C 1.50699 * 109.46735 * 84.99745 * 6 5 4 8 8 H 1.07993 * 120.00519 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99503 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00344 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47392 * 59.99804 * 11 9 7 13 13 H 1.48493 * 109.47270 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47378 * 300.00156 * 11 9 7 15 15 S 1.65606 * 119.99697 * 95.00182 * 5 4 3 16 16 O 1.42101 * 106.40064 * 203.54110 * 15 5 4 17 17 O 1.42092 * 106.40182 * 336.45974 * 15 5 4 18 18 N 1.65596 * 107.21781 * 90.00201 * 15 5 4 19 19 C 1.47157 * 120.98336 * 89.99976 * 18 15 5 20 20 C 1.53297 * 108.38516 * 129.44019 * 19 18 15 21 21 O 1.42962 * 109.22418 * 52.30215 * 20 19 18 22 22 C 1.42966 * 114.16455 * 297.42299 * 21 20 19 23 23 C 1.53004 * 109.50978 * 182.50061 * 22 21 20 24 24 C 1.47201 * 109.51144 * 302.65102 * 22 21 20 25 25 N 8.23209 * 127.19919 * 316.40360 * 2 1 3 26 26 C 1.47154 * 120.98426 * 269.71724 * 18 15 5 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 33 33 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 34 34 H 1.08998 * 109.46958 * 204.99692 * 6 5 4 35 35 H 1.08993 * 109.46893 * 325.00027 * 6 5 4 36 36 H 0.97002 * 120.00435 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.67978 * 249.16543 * 19 18 15 38 38 H 1.08997 * 109.67817 * 9.71777 * 19 18 15 39 39 H 1.08999 * 109.51315 * 172.22780 * 20 19 18 40 40 H 1.09007 * 109.51371 * 292.32812 * 20 19 18 41 41 H 1.09005 * 109.47239 * 59.99897 * 23 22 21 42 42 H 1.09004 * 109.46903 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47222 * 300.00197 * 23 22 21 44 44 H 1.09004 * 109.67711 * 350.28363 * 26 18 15 45 45 H 1.08995 * 109.68222 * 110.83574 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0004 -0.8951 -1.3782 7 6 2.6348 -1.3876 -1.7827 8 1 1.8292 -0.6839 -1.9318 9 6 2.4139 -2.7366 -1.9625 10 7 3.3947 -3.5936 -1.7804 11 14 0.7214 -3.3471 -2.4645 12 1 0.3447 -2.7451 -3.7687 13 1 0.7460 -4.8265 -2.5905 14 1 -0.2724 -2.9552 -1.4330 15 16 4.4454 1.5130 -2.5263 16 8 4.2757 0.7257 -3.6970 17 8 3.8178 2.7742 -2.3401 18 7 6.0733 1.7731 -2.3695 19 6 7.0491 0.8581 -2.9828 20 6 8.0528 1.6909 -3.7884 21 8 8.5864 2.7216 -2.9539 22 6 7.6130 3.6583 -2.4858 23 6 8.3048 4.7440 -1.6590 24 6 6.9307 4.2742 -3.6355 25 7 6.4060 4.7488 -4.5217 26 6 6.5869 2.9294 -1.6181 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.9786 2.1764 0.0890 33 1 3.8515 0.5681 0.8409 34 1 4.7294 -1.1822 -2.1360 35 1 4.2774 -1.3374 -0.4214 36 1 3.2392 -4.5427 -1.9065 37 1 7.5731 0.3044 -2.2037 38 1 6.5340 0.1623 -3.6451 39 1 8.8620 1.0489 -4.1366 40 1 7.5494 2.1391 -4.6451 41 1 9.0375 5.2611 -2.2786 42 1 7.5621 5.4580 -1.3028 43 1 8.8077 4.2867 -0.8069 44 1 5.7657 3.6046 -1.3772 45 1 7.0635 2.5878 -0.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364958392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:59 Heat of formation + Delta-G solvation = -138.258618 kcal Electronic energy + Delta-G solvation = -31153.823670 eV Core-core repulsion = 26912.759309 eV Total energy + Delta-G solvation = -4241.064361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13070 -38.99206 -38.43741 -37.47303 -36.95506 -36.77669 -36.01363 -34.44368 -34.22001 -30.95875 -29.70323 -28.40368 -27.14330 -26.85804 -24.79055 -24.47449 -23.59866 -23.24729 -20.15566 -19.17502 -18.98909 -18.58627 -18.34489 -17.71509 -17.09331 -16.92822 -16.52304 -16.36954 -16.29546 -15.89735 -15.78181 -15.47941 -15.19273 -15.03289 -14.66906 -14.37502 -14.00612 -13.96610 -13.78262 -13.71390 -13.41519 -13.36892 -13.28643 -13.14362 -12.99417 -12.94601 -12.85052 -12.68835 -12.67005 -12.64199 -12.55851 -12.28082 -11.96391 -11.85397 -11.73952 -11.45527 -11.39726 -10.42953 -10.20819 -10.06468 -9.73764 -8.02762 -6.01801 -0.50167 1.36464 1.39512 1.43058 1.48266 1.51310 1.91176 2.42543 2.51792 2.54717 2.70917 3.09371 3.19371 3.36776 3.49996 3.67261 3.90971 3.99717 4.04810 4.17299 4.27516 4.30917 4.42032 4.54011 4.55620 4.58320 4.63480 4.66001 4.80572 4.86658 4.87527 4.89959 4.93301 4.99910 5.05888 5.27587 5.33323 5.40902 5.59419 5.82268 5.88842 6.01840 6.26295 6.32665 6.57556 7.01528 7.59465 9.06456 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.004097 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.569726 B = 6831.908511 C = 7558.313968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.033 3.967 4 C 0.128 3.872 5 N -0.987 5.987 6 C 0.278 3.722 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.007 3.993 10 N -0.936 5.936 11 Si 0.933 3.067 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.260 1.260 15 S 2.782 3.218 16 O -1.009 7.009 17 O -1.002 7.002 18 N -1.014 6.014 19 C 0.080 3.920 20 C 0.048 3.952 21 O -0.341 6.341 22 C 0.204 3.796 23 C -0.133 4.133 24 C 0.196 3.804 25 N -0.461 5.461 26 C 0.089 3.911 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.013 0.987 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.033 0.967 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.260 14.280 8.213 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.288 6.288 3 C -0.046 4.046 4 C 0.003 3.997 5 N -0.828 5.828 6 C 0.155 3.845 7 C -0.526 4.526 8 H 0.079 0.921 9 C -0.189 4.189 10 N -0.579 5.579 11 Si 0.760 3.240 12 H -0.213 1.213 13 H -0.212 1.212 14 H -0.184 1.184 15 S 2.793 3.207 16 O -0.993 6.993 17 O -0.986 6.986 18 N -0.856 5.856 19 C -0.045 4.045 20 C -0.030 4.030 21 O -0.257 6.257 22 C 0.159 3.841 23 C -0.191 4.191 24 C -0.123 4.123 25 N -0.139 5.139 26 C -0.037 4.037 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.167 0.833 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.249 14.954 6.242 19.173 hybrid contribution -1.474 -1.018 -0.518 1.865 sum 8.775 13.936 5.723 17.434 Atomic orbital electron populations 1.22729 0.82507 1.01974 0.99843 1.88446 1.18730 1.26682 1.94937 1.23121 0.95557 0.85686 1.00194 1.21472 0.92415 0.99092 0.86738 1.57612 1.78795 1.17581 1.28847 1.18585 0.95882 0.73654 0.96362 1.21744 0.96980 0.91871 1.42029 0.92130 1.25468 0.99429 0.97264 0.96744 1.69988 1.32799 1.02287 1.52799 0.86012 0.82426 0.76907 0.78662 1.21319 1.21192 1.18448 1.01701 0.73451 0.72144 0.73369 1.93556 1.85455 1.71634 1.48628 1.93502 1.74854 1.43238 1.87005 1.58333 1.24002 1.35872 1.67369 1.22317 0.91064 0.92197 0.98962 1.23152 0.98741 0.89829 0.91290 1.88135 1.31699 1.38261 1.67572 1.19812 0.88793 0.90163 0.85324 1.21936 1.01810 0.95153 1.00172 1.30708 0.93264 0.93200 0.95148 1.81098 1.09970 1.10772 1.12063 1.22522 0.98722 0.86668 0.95759 0.95369 0.91298 0.92056 0.95630 0.89928 0.86609 0.88571 0.96938 0.95407 0.93281 0.87010 0.89920 0.83293 0.94861 0.90195 0.88228 0.86231 0.87167 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.90 113.37 1.24 2.12 16 2 O -0.37 -14.84 6.62 -148.98 -0.99 -15.83 16 3 C 0.03 1.08 6.22 71.98 0.45 1.53 16 4 C 0.13 3.87 5.81 86.38 0.50 4.37 16 5 N -0.99 -38.31 2.86 -519.86 -1.48 -39.79 16 6 C 0.28 13.57 5.04 85.63 0.43 14.00 16 7 C -0.49 -26.92 7.22 25.60 0.18 -26.74 16 8 H 0.06 3.41 6.09 -2.91 -0.02 3.40 16 9 C 0.01 0.43 5.46 84.66 0.46 0.89 16 10 N -0.94 -55.23 13.29 21.45 0.28 -54.95 16 11 Si 0.93 45.56 29.54 68.60 2.03 47.58 16 12 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 15 S 2.78 107.78 6.07 -56.49 -0.34 107.44 16 16 O -1.01 -49.63 15.73 -128.00 -2.01 -51.64 16 17 O -1.00 -39.46 15.72 -128.00 -2.01 -41.48 16 18 N -1.01 -27.61 3.15 -512.36 -1.61 -29.22 16 19 C 0.08 1.94 6.71 86.35 0.58 2.52 16 20 C 0.05 0.97 6.69 72.08 0.48 1.45 16 21 O -0.34 -6.06 10.21 -148.98 -1.52 -7.58 16 22 C 0.20 3.54 1.05 -12.64 -0.01 3.53 16 23 C -0.13 -1.07 8.81 71.98 0.63 -0.43 16 24 C 0.20 5.16 12.34 89.47 1.10 6.27 16 25 N -0.46 -15.28 18.52 19.98 0.37 -14.91 16 26 C 0.09 1.58 5.33 86.21 0.46 2.04 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.12 2.51 7.61 -2.39 -0.02 2.49 16 33 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 34 H 0.01 0.66 7.61 -2.39 -0.02 0.65 16 35 H 0.03 1.40 8.00 -2.39 -0.02 1.38 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.50 6.94 -2.39 -0.02 2.49 16 39 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.03 0.83 7.02 -2.38 -0.02 0.81 16 41 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.32 16 44 H 0.11 1.93 6.92 -2.38 -0.02 1.92 16 45 H 0.15 1.36 8.13 -2.39 -0.02 1.34 16 Total: -1.00 -82.19 380.65 0.21 -81.98 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.99 Total: 6.85 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.51 Total: 11.55 kcal Atomic # 7 Polarization: -136.43 SS G_CDS: -2.44 Total: -138.87 kcal Atomic # 8 Polarization: -110.00 SS G_CDS: -6.53 Total: -116.53 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 107.78 SS G_CDS: -0.34 Total: 107.44 kcal Total: -82.19 0.21 -81.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364958392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.275 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds