Wall clock time and date at job start Wed Apr 1 2020 04:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99677 * 2 1 4 4 H 1.48496 * 109.46873 * 239.99884 * 3 2 1 5 5 H 1.48501 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46733 * 120.00161 * 3 2 1 7 7 C 1.37870 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00309 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47221 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00013 * 170.00043 * 10 9 7 12 12 C 1.53232 * 109.34213 * 187.25008 * 11 10 9 13 13 N 1.47077 * 108.52239 * 306.17263 * 12 11 10 14 14 S 1.65598 * 120.87957 * 231.18647 * 13 12 11 15 15 O 1.42104 * 104.27858 * 333.92629 * 14 13 12 16 16 O 1.42104 * 104.27874 * 206.06893 * 14 13 12 17 17 C 1.81391 * 104.45152 * 89.99766 * 14 13 12 18 18 C 1.53001 * 109.47388 * 179.97438 * 17 14 13 19 19 N 1.46499 * 109.47390 * 180.02562 * 18 17 14 20 20 C 1.47096 * 125.56264 * 89.99894 * 19 18 17 21 21 C 1.54085 * 103.77778 * 179.73636 * 20 19 18 22 22 O 1.45698 * 104.00910 * 0.02562 * 21 20 19 23 23 C 1.33773 * 109.47999 * 359.97438 * 22 21 20 24 24 O 1.21506 * 123.07197 * 180.02562 * 23 22 21 25 25 C 1.47080 * 118.23798 * 51.45192 * 13 12 11 26 26 C 1.46897 * 110.99824 * 294.30066 * 10 9 7 27 27 H 0.96996 * 120.00014 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46871 * 60.00028 * 9 7 2 29 29 H 1.08999 * 109.46777 * 299.99914 * 9 7 2 30 30 H 1.09000 * 109.48904 * 67.28977 * 11 10 9 31 31 H 1.09000 * 109.51172 * 307.22693 * 11 10 9 32 32 H 1.08999 * 109.62847 * 186.45928 * 12 11 10 33 33 H 1.09003 * 109.62761 * 65.88214 * 12 11 10 34 34 H 1.09004 * 109.47458 * 60.00300 * 17 14 13 35 35 H 1.09004 * 109.47368 * 300.00004 * 17 14 13 36 36 H 1.09000 * 109.47267 * 59.99642 * 18 17 14 37 37 H 1.08997 * 109.47170 * 300.00102 * 18 17 14 38 38 H 1.09000 * 110.56369 * 298.31107 * 20 19 18 39 39 H 1.09000 * 110.56028 * 61.16342 * 20 19 18 40 40 H 1.08999 * 110.52008 * 118.63412 * 21 20 19 41 41 H 1.09004 * 110.52418 * 241.22787 * 21 20 19 42 42 H 1.09004 * 109.62579 * 68.26064 * 25 13 12 43 43 H 1.08997 * 109.62782 * 188.82817 * 25 13 12 44 44 H 1.09001 * 109.49213 * 292.70746 * 26 10 9 45 45 H 1.08995 * 109.49858 * 52.78855 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5214 -4.8935 0.2376 12 6 2.5639 -6.0031 0.4103 13 7 3.4617 -5.9861 -0.7545 14 16 3.7693 -7.3697 -1.6108 15 8 3.5628 -8.4162 -0.6719 16 8 5.0477 -7.1467 -2.1899 17 6 2.4867 -7.4030 -2.8931 18 6 2.6660 -8.6498 -3.7616 19 7 1.6305 -8.6763 -4.7976 20 6 1.7442 -8.0775 -6.1363 21 6 0.3922 -8.4029 -6.7999 22 8 -0.3342 -9.1426 -5.7762 23 6 0.4273 -9.2549 -4.6821 24 8 0.0614 -9.8290 -3.6757 25 6 4.0838 -4.7088 -1.1350 26 6 2.9768 -3.6489 -1.2504 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 0.8798 -5.1263 -0.6122 31 1 0.9159 -4.8194 1.1409 32 1 2.0634 -6.9694 0.4728 33 1 3.1396 -5.8265 1.3189 34 1 2.5718 -6.5120 -3.5154 35 1 1.5035 -7.4254 -2.4231 36 1 2.5812 -9.5410 -3.1397 37 1 3.6491 -8.6270 -4.2316 38 1 1.8849 -6.9991 -6.0626 39 1 2.5632 -8.5344 -6.6918 40 1 -0.1379 -7.4858 -7.0567 41 1 0.5403 -9.0186 -7.6871 42 1 4.8029 -4.4102 -0.3722 43 1 4.5887 -4.8190 -2.0947 44 1 2.3149 -3.8991 -2.0795 45 1 3.4272 -2.6721 -1.4262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365454044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:54 Heat of formation + Delta-G solvation = -115.990806 kcal Electronic energy + Delta-G solvation = -29444.748639 eV Core-core repulsion = 25204.649882 eV Total energy + Delta-G solvation = -4240.098757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93314 -38.43748 -37.58529 -37.30381 -36.50445 -36.09531 -34.47499 -32.38894 -32.33788 -30.82681 -29.73668 -27.90365 -25.32905 -24.95978 -24.08035 -23.39496 -21.87024 -21.38038 -20.14836 -18.83626 -18.18093 -17.74327 -17.42751 -17.22508 -16.51194 -16.47278 -16.26840 -15.48513 -14.90461 -14.64124 -14.54949 -14.50395 -14.44505 -14.22204 -14.16841 -14.08249 -13.80228 -13.50055 -12.94437 -12.87618 -12.56797 -12.31795 -12.24850 -12.07007 -11.98028 -11.84751 -11.33090 -11.29042 -11.11576 -11.10888 -10.94336 -10.87459 -10.84051 -10.63979 -10.44674 -9.92871 -9.53943 -9.36086 -8.88110 -8.50824 -7.37094 -6.10317 -4.12588 0.01969 1.95542 2.32299 2.49555 3.01907 3.27942 3.32971 3.35362 3.61587 3.64628 3.88490 4.04697 4.08052 4.22588 4.34944 4.55034 4.66520 4.68175 4.72380 4.83242 4.83836 4.95278 5.24849 5.26557 5.33874 5.34679 5.45275 5.58314 5.63442 5.73902 5.81708 5.98396 6.12541 6.26085 6.39606 6.41573 6.65913 6.88543 7.18003 7.22123 7.60499 7.70027 7.97748 8.08008 8.43393 8.94651 9.52253 11.00369 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.002901 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.809213 B = 9649.199163 C =10827.957374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.039 3.961 12 C 0.127 3.873 13 N -0.994 5.994 14 S 2.615 3.385 15 O -0.948 6.948 16 O -0.952 6.952 17 C -0.666 4.666 18 C 0.163 3.837 19 N -0.626 5.626 20 C 0.061 3.939 21 C 0.041 3.959 22 O -0.326 6.326 23 C 0.642 3.358 24 O -0.514 6.514 25 C 0.124 3.876 26 C 0.050 3.950 27 H 0.262 0.738 28 H -0.010 1.010 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.022 0.978 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.581 -16.227 -14.151 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.258 5.258 11 C -0.091 4.091 12 C 0.002 3.998 13 N -0.833 5.833 14 S 2.706 3.294 15 O -0.939 6.939 16 O -0.942 6.942 17 C -0.793 4.793 18 C 0.040 3.960 19 N -0.374 5.374 20 C -0.062 4.062 21 C -0.034 4.034 22 O -0.236 6.236 23 C 0.396 3.604 24 O -0.398 6.398 25 C -0.001 4.001 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.997 -17.035 -13.118 22.321 hybrid contribution -0.855 1.472 -1.160 2.060 sum 5.142 -15.562 -14.278 21.737 Atomic orbital electron populations 1.69944 1.06106 1.27009 1.50666 1.24992 0.94858 0.99368 0.95324 0.86550 0.79422 0.82677 0.78684 1.20266 1.21380 1.20105 1.21108 0.93472 0.89871 1.50521 0.91796 1.19728 0.89977 0.87211 0.96184 1.61992 1.27953 1.02554 1.33311 1.22428 0.94812 0.90969 1.00887 1.21613 0.91336 0.98921 0.87931 1.57685 1.60290 1.24439 1.40871 1.04924 0.75590 0.73582 0.75317 1.93613 1.86730 1.55077 1.58443 1.93598 1.35760 1.84948 1.79911 1.31354 1.22326 1.07054 1.18590 1.20893 0.90255 0.96560 0.88267 1.47929 1.16063 1.57993 1.15441 1.22909 0.98889 1.01206 0.83242 1.24316 0.90417 0.97979 0.90678 1.87313 1.40772 1.71012 1.24496 1.18524 0.79859 0.78710 0.83284 1.91083 1.75017 1.46361 1.27339 1.21797 0.95641 0.81793 1.00847 1.22441 0.95094 0.99322 0.91152 0.92795 0.99198 0.95019 0.95735 0.89962 0.89624 0.90011 0.84531 0.84276 0.87822 0.88084 0.88580 0.88510 0.87321 0.87352 0.90022 0.89758 0.95991 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.61 8.41 -34.44 -0.29 -13.90 16 8 H 0.06 1.66 7.13 -52.48 -0.37 1.29 16 9 C 0.19 4.77 4.72 -4.98 -0.02 4.74 16 10 N -0.53 -10.54 4.62 -235.47 -1.09 -11.63 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.13 1.75 6.46 -3.61 -0.02 1.73 16 13 N -0.99 -13.13 3.25 -112.98 -0.37 -13.49 16 14 S 2.62 30.86 5.42 -107.50 -0.58 30.28 16 15 O -0.95 -13.80 16.79 -57.54 -0.97 -14.76 16 16 O -0.95 -12.82 16.78 -57.54 -0.97 -13.79 16 17 C -0.67 -6.12 6.50 37.16 0.24 -5.88 16 18 C 0.16 1.38 6.02 -4.04 -0.02 1.36 16 19 N -0.63 -5.49 2.96 -178.85 -0.53 -6.02 16 20 C 0.06 0.27 7.70 -3.15 -0.02 0.24 16 21 C 0.04 0.18 8.23 37.72 0.31 0.49 16 22 O -0.33 -3.36 11.09 -37.84 -0.42 -3.78 16 23 C 0.64 7.90 8.85 53.71 0.48 8.37 16 24 O -0.51 -8.49 17.54 -19.11 -0.34 -8.83 16 25 C 0.12 1.71 6.50 -3.37 -0.02 1.69 16 26 C 0.05 0.85 5.47 -3.47 -0.02 0.83 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 29 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 32 H 0.09 1.04 7.19 -51.93 -0.37 0.67 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.14 1.41 8.14 -51.92 -0.42 0.98 16 36 H 0.10 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 0.97 7.18 -51.93 -0.37 0.60 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -37.28 380.59 -10.23 -47.52 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.91 Total: -3.68 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 0.48 Total: 1.74 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -1.25 Total: -56.27 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -2.69 Total: -41.16 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 30.86 SS G_CDS: -0.58 Total: 30.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.28 -10.23 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365454044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.473 kcal (2) G-P(sol) polarization free energy of solvation -37.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds