Wall clock time and date at job start Wed Apr 1 2020 04:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54084 * 109.68380 * 2 1 4 4 S 1.83912 * 102.74939 * 98.09804 * 3 2 1 5 5 C 1.83920 * 94.80595 * 34.72095 * 4 3 2 6 6 C 1.53456 * 110.06678 * 124.08918 * 2 1 3 7 7 H 1.09000 * 109.59113 * 0.17374 * 6 2 1 8 8 C 1.53936 * 105.63775 * 118.65403 * 6 2 1 9 9 N 1.47294 * 106.16519 * 341.43651 * 8 6 2 10 10 C 1.34783 * 126.69164 * 210.92395 * 9 8 6 11 11 O 1.21276 * 119.99519 * 179.97438 * 10 9 8 12 12 C 1.50693 * 119.99975 * 359.95480 * 10 9 8 13 13 C 1.50700 * 109.46756 * 180.02562 * 12 10 9 14 14 C 1.38300 * 119.93199 * 269.72825 * 13 12 10 15 15 C 1.38107 * 120.06994 * 179.72466 * 14 13 12 16 16 C 1.38880 * 119.92676 * 0.57178 * 15 14 13 17 17 O 1.35753 * 120.06599 * 179.67715 * 16 15 14 18 18 C 1.34832 * 116.99504 * 174.48527 * 17 16 15 19 19 H 1.07994 * 120.00371 * 5.06653 * 18 17 16 20 20 C 1.38659 * 119.99487 * 185.06126 * 18 17 16 21 21 N 1.31559 * 119.99443 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00338 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46930 * 90.00183 * 22 20 18 24 24 H 1.48496 * 109.47270 * 210.00053 * 22 20 18 25 25 H 1.48503 * 109.46937 * 330.00077 * 22 20 18 26 26 C 1.38875 * 119.86397 * 359.70513 * 16 15 14 27 27 C 1.38105 * 119.93194 * 359.97438 * 26 16 15 28 28 C 1.47283 * 106.60926 * 30.88783 * 9 8 6 29 29 H 1.09002 * 109.47315 * 179.00997 * 1 2 3 30 30 H 1.09003 * 109.46650 * 299.00154 * 1 2 3 31 31 H 1.08998 * 109.47741 * 59.00437 * 1 2 3 32 32 H 1.09001 * 110.71134 * 339.79325 * 3 2 1 33 33 H 1.09002 * 110.93857 * 216.50781 * 3 2 1 34 34 H 1.08997 * 110.75985 * 207.01697 * 5 4 3 35 35 H 1.09000 * 110.92059 * 83.70246 * 5 4 3 36 36 H 1.09005 * 110.11224 * 222.26138 * 8 6 2 37 37 H 1.08997 * 110.11654 * 100.61549 * 8 6 2 38 38 H 1.09000 * 109.47528 * 300.00408 * 12 10 9 39 39 H 1.09002 * 109.47110 * 60.00930 * 12 10 9 40 40 H 1.08004 * 119.96446 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.03823 * 180.27138 * 15 14 13 42 42 H 0.97006 * 119.99504 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.03862 * 179.97438 * 26 16 15 44 44 H 1.07998 * 119.96623 * 179.97438 * 27 26 16 45 45 H 1.08998 * 110.11563 * 88.28890 * 28 9 8 46 46 H 1.08997 * 110.11700 * 209.87426 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0490 1.4508 0.0000 4 16 2.4236 1.7478 1.7759 5 6 2.9773 0.0255 2.1068 6 6 2.0565 -0.8079 1.1937 7 1 1.2174 -1.2004 1.7681 8 6 2.8666 -1.9669 0.5854 9 7 2.4308 -2.0801 -0.8170 10 6 2.3830 -3.2054 -1.5572 11 8 2.0014 -3.1588 -2.7074 12 6 2.8043 -4.5213 -0.9558 13 6 2.6578 -5.6133 -1.9839 14 6 1.4676 -6.3103 -2.0856 15 6 1.3283 -7.3077 -3.0306 16 6 2.3890 -7.6186 -3.8714 17 8 2.2574 -8.6030 -4.7969 18 6 3.2823 -8.7768 -5.6555 19 1 4.1896 -8.2033 -5.5366 20 6 3.1714 -9.6921 -6.6911 21 7 4.1717 -9.8621 -7.5286 22 14 1.6019 -10.6838 -6.8973 23 1 0.6627 -9.9462 -7.7800 24 1 1.9238 -11.9992 -7.5063 25 1 0.9713 -10.8941 -5.5693 26 6 3.5848 -6.9208 -3.7630 27 6 3.7156 -5.9200 -2.8204 28 6 2.0568 -0.7237 -1.2524 29 1 -0.3634 -1.0275 -0.0178 30 1 -0.3633 0.4983 0.8988 31 1 -0.3634 0.5292 -0.8809 32 1 1.2779 2.1361 -0.3522 33 1 2.9507 1.5420 -0.6057 34 1 2.8226 -0.2357 3.1536 35 1 4.0223 -0.1079 1.8271 36 1 2.6547 -2.8932 1.1197 37 1 3.9324 -1.7433 0.6300 38 1 3.8451 -4.4591 -0.6381 39 1 2.1743 -4.7456 -0.0949 40 1 0.6448 -6.0715 -1.4279 41 1 0.3971 -7.8487 -3.1124 42 1 4.0940 -10.5022 -8.2534 43 1 4.4117 -7.1606 -4.4151 44 1 4.6455 -5.3773 -2.7353 45 1 2.9290 -0.2028 -1.6472 46 1 1.2763 -0.7755 -2.0114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412328677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:13 Heat of formation + Delta-G solvation = -32.891880 kcal Electronic energy + Delta-G solvation = -27441.845245 eV Core-core repulsion = 23616.199192 eV Total energy + Delta-G solvation = -3825.646054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82213 -39.30850 -38.44006 -36.59688 -34.30256 -32.54251 -32.42511 -31.54415 -30.22580 -28.11590 -27.79617 -26.73994 -25.97063 -24.68112 -22.80740 -22.08725 -20.83920 -19.68996 -19.27625 -17.87517 -17.28229 -17.24497 -16.63623 -16.42857 -15.86918 -15.49978 -15.04188 -14.70340 -14.55505 -14.27760 -13.99920 -13.78082 -13.75113 -13.52098 -13.36427 -13.13494 -12.85287 -12.67666 -12.59238 -12.49254 -12.31162 -12.20311 -12.15496 -11.66719 -11.63605 -11.55167 -11.28732 -11.23702 -10.91979 -10.74533 -10.66334 -10.36671 -10.14129 -9.76180 -9.36658 -8.93901 -8.84200 -8.22222 -8.19720 -7.29542 -6.39771 -4.06082 1.35578 1.73942 2.13734 2.17284 2.63956 2.80586 3.23429 3.27624 3.41739 3.77030 3.91245 3.97447 4.21498 4.25503 4.42404 4.45104 4.57479 4.64695 4.82242 4.87565 4.89953 5.00825 5.04517 5.09614 5.11335 5.12767 5.17689 5.20069 5.32192 5.39351 5.46098 5.49488 5.57129 5.57973 5.66172 5.75040 5.76013 6.01487 6.14867 6.34310 6.57794 6.80844 7.03513 7.23088 7.31941 7.33564 7.63352 7.82394 8.05883 8.16994 8.95564 9.58174 10.67889 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.001863 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.266817 B =15023.404868 C =15098.022735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.056 4.056 4 S -0.293 6.293 5 C -0.060 4.060 6 C -0.098 4.098 7 H 0.100 0.900 8 C 0.107 3.893 9 N -0.627 5.627 10 C 0.529 3.471 11 O -0.515 6.515 12 C -0.076 4.076 13 C -0.164 4.164 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.217 6.217 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.057 4.057 28 C 0.115 3.885 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.279 0.721 43 H 0.133 0.867 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 21.004 21.413 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.204 4.204 4 S -0.065 6.065 5 C -0.209 4.209 6 C -0.118 4.118 7 H 0.118 0.882 8 C -0.018 4.018 9 N -0.364 5.364 10 C 0.318 3.682 11 O -0.388 6.388 12 C -0.115 4.115 13 C -0.165 4.165 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.110 3.890 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.076 4.076 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.089 0.911 43 H 0.151 0.849 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.021 21.647 21.177 30.549 hybrid contribution -0.252 -1.245 -0.918 1.567 sum -4.273 20.403 20.258 29.067 Atomic orbital electron populations 1.21940 0.91953 1.02746 1.02723 1.21859 0.97846 0.92839 0.94997 1.24332 1.04469 0.97490 0.94118 1.88097 1.86448 1.18441 1.13490 1.24247 1.01786 0.91588 1.03235 1.22554 0.98454 0.95733 0.95083 0.88151 1.22311 0.98426 0.98811 0.82240 1.48653 1.67361 1.07308 1.13050 1.20782 0.77413 0.84090 0.85877 1.90768 1.45309 1.85613 1.17116 1.20403 1.02857 0.90045 0.98221 1.18694 0.95859 1.00280 1.01648 1.20391 0.95764 0.94783 0.97014 1.20149 0.98223 1.02730 0.99916 1.19122 0.93087 0.87447 0.89317 1.83572 1.43483 1.45589 1.39605 1.20774 0.94347 1.24532 1.06762 0.87623 1.24475 0.98524 0.96901 0.94169 1.69653 1.31112 1.35269 1.15741 0.86174 0.82342 0.78897 0.79443 1.19883 1.20805 1.18370 1.21224 0.99082 1.00564 1.02948 1.20562 0.97178 0.95793 0.94034 1.22217 1.00374 0.82466 0.95869 0.91875 0.91462 0.91846 0.87289 0.88706 0.87307 0.88638 0.89715 0.90915 0.88903 0.88947 0.87248 0.86527 0.91082 0.84935 0.87557 0.91367 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 7.87 37.16 0.29 -0.53 16 2 C -0.07 -0.44 0.87 -153.22 -0.13 -0.57 16 3 C -0.06 -0.32 6.48 37.72 0.24 -0.07 16 4 S -0.29 -2.05 23.26 -107.50 -2.50 -4.56 16 5 C -0.06 -0.28 6.95 37.75 0.26 -0.02 16 6 C -0.10 -0.50 3.08 -89.30 -0.28 -0.77 16 7 H 0.10 0.48 7.64 -51.93 -0.40 0.08 16 8 C 0.11 0.62 6.35 -3.12 -0.02 0.60 16 9 N -0.63 -6.03 3.32 -171.27 -0.57 -6.60 16 10 C 0.53 7.12 7.87 -10.99 -0.09 7.04 16 11 O -0.51 -9.56 16.27 5.56 0.09 -9.47 16 12 C -0.08 -0.90 4.81 -29.04 -0.14 -1.04 16 13 C -0.16 -2.74 4.38 -104.57 -0.46 -3.20 16 14 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 15 C -0.19 -3.91 9.99 -39.39 -0.39 -4.30 16 16 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.22 -5.87 8.59 0.03 0.00 -5.87 16 18 C -0.39 -11.15 9.95 30.89 0.31 -10.84 16 19 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.72 13.96 55.48 0.77 -24.95 16 22 Si 0.91 22.01 28.62 -169.99 -4.86 17.14 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 27 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 28 C 0.11 0.97 6.10 -3.13 -0.02 0.96 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.55 7.81 -51.93 -0.41 0.14 16 33 H 0.09 0.51 7.30 -51.93 -0.38 0.13 16 34 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.39 7.28 -51.93 -0.38 0.01 16 36 H 0.08 0.39 7.33 -51.93 -0.38 0.01 16 37 H 0.07 0.36 7.24 -51.93 -0.38 -0.02 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.49 16 39 H 0.09 0.86 7.80 -51.93 -0.41 0.45 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.07 0.55 7.25 -51.93 -0.38 0.18 16 46 H 0.09 0.87 7.56 -51.93 -0.39 0.48 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -33.74 382.18 -9.80 -43.54 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.59 Total: 0.61 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.90 Total: -15.60 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.21 Total: -31.55 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.14 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.50 Total: -4.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -9.80 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412328677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.645 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds