Wall clock time and date at job start Wed Apr 1 2020 04:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.54084 * 109.68380 * 2 1 4 4 S 1.83912 * 102.74939 * 98.09804 * 3 2 1 5 5 C 1.83920 * 94.80595 * 34.72095 * 4 3 2 6 6 C 1.53456 * 110.06678 * 124.08918 * 2 1 3 7 7 H 1.09000 * 109.59113 * 0.17374 * 6 2 1 8 8 C 1.53936 * 105.63775 * 118.65403 * 6 2 1 9 9 N 1.47294 * 106.16519 * 341.43651 * 8 6 2 10 10 C 1.34783 * 126.69164 * 210.92395 * 9 8 6 11 11 O 1.21276 * 119.99519 * 179.97438 * 10 9 8 12 12 C 1.50693 * 119.99975 * 359.95480 * 10 9 8 13 13 C 1.50700 * 109.46756 * 180.02562 * 12 10 9 14 14 C 1.38300 * 119.93199 * 269.72825 * 13 12 10 15 15 C 1.38107 * 120.06994 * 179.72466 * 14 13 12 16 16 C 1.38880 * 119.92676 * 0.57178 * 15 14 13 17 17 O 1.35753 * 120.06599 * 179.67715 * 16 15 14 18 18 C 1.34832 * 116.99504 * 174.48527 * 17 16 15 19 19 H 1.07994 * 120.00371 * 5.06653 * 18 17 16 20 20 C 1.38659 * 119.99487 * 185.06126 * 18 17 16 21 21 N 1.31559 * 119.99443 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00338 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46930 * 90.00183 * 22 20 18 24 24 H 1.48496 * 109.47270 * 210.00053 * 22 20 18 25 25 H 1.48503 * 109.46937 * 330.00077 * 22 20 18 26 26 C 1.38875 * 119.86397 * 359.70513 * 16 15 14 27 27 C 1.38105 * 119.93194 * 359.97438 * 26 16 15 28 28 C 1.47283 * 106.60926 * 30.88783 * 9 8 6 29 29 H 1.09002 * 109.47315 * 179.00997 * 1 2 3 30 30 H 1.09003 * 109.46650 * 299.00154 * 1 2 3 31 31 H 1.08998 * 109.47741 * 59.00437 * 1 2 3 32 32 H 1.09001 * 110.71134 * 339.79325 * 3 2 1 33 33 H 1.09002 * 110.93857 * 216.50781 * 3 2 1 34 34 H 1.08997 * 110.75985 * 207.01697 * 5 4 3 35 35 H 1.09000 * 110.92059 * 83.70246 * 5 4 3 36 36 H 1.09005 * 110.11224 * 222.26138 * 8 6 2 37 37 H 1.08997 * 110.11654 * 100.61549 * 8 6 2 38 38 H 1.09000 * 109.47528 * 300.00408 * 12 10 9 39 39 H 1.09002 * 109.47110 * 60.00930 * 12 10 9 40 40 H 1.08004 * 119.96446 * 359.97438 * 14 13 12 41 41 H 1.07997 * 120.03823 * 180.27138 * 15 14 13 42 42 H 0.97006 * 119.99504 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.03862 * 179.97438 * 26 16 15 44 44 H 1.07998 * 119.96623 * 179.97438 * 27 26 16 45 45 H 1.08998 * 110.11563 * 88.28890 * 28 9 8 46 46 H 1.08997 * 110.11700 * 209.87426 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0490 1.4508 0.0000 4 16 2.4236 1.7478 1.7759 5 6 2.9773 0.0255 2.1068 6 6 2.0565 -0.8079 1.1937 7 1 1.2174 -1.2004 1.7681 8 6 2.8666 -1.9669 0.5854 9 7 2.4308 -2.0801 -0.8170 10 6 2.3830 -3.2054 -1.5572 11 8 2.0014 -3.1588 -2.7074 12 6 2.8043 -4.5213 -0.9558 13 6 2.6578 -5.6133 -1.9839 14 6 1.4676 -6.3103 -2.0856 15 6 1.3283 -7.3077 -3.0306 16 6 2.3890 -7.6186 -3.8714 17 8 2.2574 -8.6030 -4.7969 18 6 3.2823 -8.7768 -5.6555 19 1 4.1896 -8.2033 -5.5366 20 6 3.1714 -9.6921 -6.6911 21 7 4.1717 -9.8621 -7.5286 22 14 1.6019 -10.6838 -6.8973 23 1 0.6627 -9.9462 -7.7800 24 1 1.9238 -11.9992 -7.5063 25 1 0.9713 -10.8941 -5.5693 26 6 3.5848 -6.9208 -3.7630 27 6 3.7156 -5.9200 -2.8204 28 6 2.0568 -0.7237 -1.2524 29 1 -0.3634 -1.0275 -0.0178 30 1 -0.3633 0.4983 0.8988 31 1 -0.3634 0.5292 -0.8809 32 1 1.2779 2.1361 -0.3522 33 1 2.9507 1.5420 -0.6057 34 1 2.8226 -0.2357 3.1536 35 1 4.0223 -0.1079 1.8271 36 1 2.6547 -2.8932 1.1197 37 1 3.9324 -1.7433 0.6300 38 1 3.8451 -4.4591 -0.6381 39 1 2.1743 -4.7456 -0.0949 40 1 0.6448 -6.0715 -1.4279 41 1 0.3971 -7.8487 -3.1124 42 1 4.0940 -10.5022 -8.2534 43 1 4.4117 -7.1606 -4.4151 44 1 4.6455 -5.3773 -2.7353 45 1 2.9290 -0.2028 -1.6472 46 1 1.2763 -0.7755 -2.0114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412328677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:12 Heat of formation + Delta-G solvation = -52.894364 kcal Electronic energy + Delta-G solvation = -27442.712618 eV Core-core repulsion = 23616.199192 eV Total energy + Delta-G solvation = -3826.513426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57995 -40.85462 -39.56262 -38.19514 -35.06045 -34.52008 -33.05950 -32.81494 -31.81456 -29.03034 -28.58510 -27.43036 -27.21879 -26.14753 -23.71910 -23.33495 -22.30169 -20.47842 -19.99935 -19.78569 -19.09006 -18.11774 -17.20872 -17.11443 -16.79308 -16.65577 -16.13800 -16.04799 -15.71881 -15.62235 -15.32117 -15.22049 -14.99690 -14.39544 -14.34522 -14.18950 -14.07694 -13.82180 -13.70833 -13.57253 -13.03941 -13.01217 -12.93257 -12.77456 -12.64461 -12.52739 -12.42043 -12.34991 -12.10850 -11.99329 -11.91710 -11.68979 -11.28903 -11.08494 -10.90366 -10.62968 -9.79682 -9.72559 -8.99165 -8.71708 -8.51078 -6.23577 0.57884 0.60112 0.91702 1.29622 1.31741 1.34433 1.50744 1.66416 1.97571 2.27228 2.76235 3.03055 3.16283 3.28292 3.45060 3.50465 3.76434 3.81850 3.99160 4.02179 4.07696 4.11895 4.16163 4.23710 4.42202 4.48932 4.54839 4.58093 4.60807 4.65808 4.70374 4.75096 4.76790 4.79268 4.83336 4.95850 4.97163 5.02839 5.09685 5.24064 5.25978 5.32813 5.38118 5.56108 5.72921 5.78948 5.90471 6.23731 6.52096 6.83085 7.21111 7.57759 8.60665 Molecular weight = 347.13amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.001863 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.266817 B =15023.404868 C =15098.022735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C -0.047 4.047 4 S -0.340 6.340 5 C -0.046 4.046 6 C -0.092 4.092 7 H 0.110 0.890 8 C 0.101 3.899 9 N -0.621 5.621 10 C 0.528 3.472 11 O -0.580 6.580 12 C -0.073 4.073 13 C -0.138 4.138 14 C -0.058 4.058 15 C -0.193 4.193 16 C 0.118 3.882 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.923 5.923 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.064 4.064 28 C 0.111 3.889 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.128 0.872 42 H 0.285 0.715 43 H 0.106 0.894 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 22.364 25.333 34.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.067 4.067 3 C -0.195 4.195 4 S -0.112 6.112 5 C -0.194 4.194 6 C -0.112 4.112 7 H 0.128 0.872 8 C -0.022 4.022 9 N -0.354 5.354 10 C 0.318 3.682 11 O -0.459 6.459 12 C -0.112 4.112 13 C -0.139 4.139 14 C -0.076 4.076 15 C -0.213 4.213 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.083 4.083 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.150 0.850 45 H 0.090 0.910 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.081 23.069 25.189 34.532 hybrid contribution 0.117 -1.312 -1.833 2.257 sum -4.964 21.757 23.356 32.303 Atomic orbital electron populations 1.21907 0.91959 1.02238 1.02954 1.21805 0.97735 0.92815 0.94328 1.24300 1.04720 0.97308 0.93166 1.88323 1.86837 1.21352 1.14735 1.24319 1.02061 0.88926 1.04076 1.22533 0.98821 0.95269 0.94615 0.87161 1.22650 0.99422 1.00275 0.79880 1.48611 1.65738 1.06655 1.14433 1.20908 0.76777 0.85309 0.85192 1.90766 1.48646 1.86648 1.19876 1.20527 1.05960 0.87223 0.97489 1.19294 0.94293 0.99770 1.00561 1.20939 0.97296 0.93094 0.96289 1.20512 0.97681 1.03404 0.99653 1.19688 0.94934 0.88335 0.90151 1.83510 1.42901 1.48011 1.40932 1.20706 0.94352 1.24691 1.07849 0.90345 1.25317 1.01902 0.98039 0.93799 1.69737 1.33072 1.36789 1.16828 0.85191 0.78191 0.77964 0.79185 1.19313 1.18915 1.18601 1.21250 0.98211 1.02205 1.04116 1.20905 0.99282 0.94753 0.93311 1.22295 0.99989 0.82382 0.96629 0.92665 0.90851 0.92076 0.86926 0.88413 0.85676 0.87596 0.87227 0.89205 0.85655 0.84737 0.82897 0.85373 0.90567 0.87612 0.85010 0.91048 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.87 71.98 0.57 -0.76 16 2 C -0.06 -0.61 0.87 -51.35 -0.04 -0.65 16 3 C -0.05 -0.44 6.48 72.35 0.47 0.03 16 4 S -0.34 -4.00 23.26 -56.49 -1.31 -5.31 16 5 C -0.05 -0.24 6.95 72.37 0.50 0.27 16 6 C -0.09 -0.54 3.08 -9.94 -0.03 -0.58 16 7 H 0.11 0.52 7.64 -2.39 -0.02 0.50 16 8 C 0.10 0.64 6.35 86.54 0.55 1.19 16 9 N -0.62 -9.67 3.32 -814.16 -2.71 -12.38 16 10 C 0.53 12.42 7.87 87.65 0.69 13.11 16 11 O -0.58 -20.81 16.27 -3.02 -0.05 -20.86 16 12 C -0.07 -1.34 4.81 29.10 0.14 -1.20 16 13 C -0.14 -4.17 4.38 -19.83 -0.09 -4.26 16 14 C -0.06 -1.85 9.69 22.25 0.22 -1.63 16 15 C -0.19 -7.77 9.99 22.39 0.22 -7.55 16 16 C 0.12 5.81 6.65 22.58 0.15 5.96 16 17 O -0.25 -13.94 8.59 -22.79 -0.20 -14.14 16 18 C -0.40 -24.46 9.95 67.92 0.68 -23.79 16 19 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 20 C 0.01 0.45 5.49 84.83 0.47 0.92 16 21 N -0.92 -56.57 13.96 21.62 0.30 -56.26 16 22 Si 0.97 46.79 28.62 68.60 1.96 48.76 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 26 C -0.24 -11.10 9.17 22.39 0.21 -10.89 16 27 C -0.06 -2.34 9.69 22.25 0.22 -2.13 16 28 C 0.11 1.66 6.10 86.55 0.53 2.19 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.96 7.81 -2.39 -0.02 0.94 16 33 H 0.10 0.86 7.30 -2.39 -0.02 0.85 16 34 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.11 0.37 7.28 -2.39 -0.02 0.35 16 36 H 0.11 0.24 7.33 -2.38 -0.02 0.23 16 37 H 0.09 0.37 7.24 -2.39 -0.02 0.35 16 38 H 0.13 1.62 8.08 -2.39 -0.02 1.60 16 39 H 0.13 1.47 7.80 -2.39 -0.02 1.45 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 41 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.28 15.95 8.31 -92.70 -0.77 15.18 16 43 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 44 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.07 1.03 7.25 -2.39 -0.02 1.02 16 46 H 0.06 1.25 7.56 -2.39 -0.02 1.24 16 Total: -1.00 -80.54 382.18 4.43 -76.11 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.99 Total: 13.85 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.44 Total: -29.77 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -2.40 Total: -68.65 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.24 Total: -34.99 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.76 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.31 Total: -5.31 kcal Total: -80.54 4.43 -76.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412328677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.215 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds