Wall clock time and date at job start Wed Apr 1 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33984 * 125.78718 * 2 1 4 4 C 1.34180 * 110.80849 * 180.30148 * 3 2 1 5 5 C 1.34288 * 109.06987 * 359.73245 * 4 3 2 6 6 C 1.36121 * 125.79850 * 179.83211 * 2 1 3 7 7 C 1.47784 * 127.14985 * 359.97438 * 6 2 1 8 8 C 1.36733 * 126.85496 * 130.00843 * 7 6 2 9 9 C 1.41575 * 103.85565 * 180.12843 * 8 7 6 10 10 N 1.39527 * 126.79318 * 179.86000 * 9 8 7 11 11 C 1.34784 * 119.99889 * 359.70978 * 10 9 8 12 12 O 1.21574 * 119.99695 * 359.72809 * 11 10 9 13 13 N 1.34777 * 119.99964 * 179.72886 * 11 10 9 14 14 C 1.47416 * 125.64897 * 359.68525 * 13 11 10 15 15 C 1.55137 * 104.72276 * 155.82015 * 14 13 11 16 16 C 1.55156 * 101.47987 * 37.29940 * 15 14 13 17 17 O 1.42897 * 110.72224 * 82.69839 * 16 15 14 18 18 C 1.50706 * 110.86870 * 205.89858 * 16 15 14 19 19 H 1.07993 * 119.99740 * 355.06102 * 18 16 15 20 20 C 1.37880 * 119.99877 * 175.06552 * 18 16 15 21 21 N 1.31517 * 119.99655 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46883 * 119.99986 * 22 20 18 25 25 H 1.48500 * 109.47067 * 240.00054 * 22 20 18 26 26 C 1.47016 * 125.64640 * 180.02562 * 13 11 10 27 27 N 1.30863 * 106.41509 * 359.59668 * 9 8 7 28 28 O 1.20885 * 111.80908 * 0.26149 * 27 9 8 29 29 H 1.09004 * 109.47258 * 270.16370 * 1 2 3 30 30 H 1.08995 * 109.47427 * 30.16736 * 1 2 3 31 31 H 1.09005 * 109.46734 * 150.17062 * 1 2 3 32 32 H 1.08004 * 125.46336 * 179.68811 * 4 3 2 33 33 H 1.07997 * 126.99533 * 179.97438 * 5 4 3 34 34 H 1.07993 * 128.06945 * 359.97438 * 8 7 6 35 35 H 0.97000 * 120.00715 * 179.43554 * 10 9 8 36 36 H 1.08995 * 110.37138 * 274.75477 * 14 13 11 37 37 H 1.09006 * 110.36727 * 37.07716 * 14 13 11 38 38 H 1.08991 * 111.19029 * 279.19681 * 15 14 13 39 39 H 1.08999 * 110.90726 * 155.27644 * 15 14 13 40 40 H 0.96701 * 114.00299 * 185.02132 * 17 16 15 41 41 H 0.97001 * 119.99647 * 180.02562 * 21 20 18 42 42 H 1.09008 * 109.88126 * 300.43124 * 26 13 11 43 43 H 1.08997 * 109.88761 * 61.44248 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2906 1.0869 0.0000 4 6 3.5867 0.7401 -0.0066 5 6 3.6826 -0.5994 -0.0052 6 6 2.3033 -1.1040 0.0032 7 6 1.8699 -2.5169 0.0079 8 6 2.3016 -3.5099 -0.8271 9 6 1.5773 -4.6495 -0.4015 10 7 1.6522 -5.9355 -0.9377 11 6 2.4764 -6.1866 -1.9741 12 8 3.1510 -5.2914 -2.4449 13 7 2.5528 -7.4300 -2.4885 14 6 1.7996 -8.6044 -2.0125 15 6 1.7399 -9.5567 -3.2357 16 6 3.1420 -9.3407 -3.8640 17 8 4.1216 -10.1440 -3.2028 18 6 3.1201 -9.6383 -5.3412 19 1 2.2245 -10.0308 -5.7996 20 6 4.2434 -9.4096 -6.1073 21 7 5.3339 -8.9312 -5.5489 22 14 4.2164 -9.7791 -7.9381 23 1 2.8807 -10.3057 -8.3172 24 1 4.4921 -8.5338 -8.6985 25 1 5.2552 -10.7923 -8.2540 26 6 3.4063 -7.8412 -3.6127 27 7 0.8281 -4.2594 0.5980 28 8 0.9764 -3.0841 0.8385 29 1 -0.3634 0.0029 1.0277 30 1 -0.3634 0.8884 -0.5164 31 1 -0.3633 -0.8916 -0.5112 32 1 4.4194 1.4279 -0.0128 33 1 4.5893 -1.1860 -0.0097 34 1 3.0243 -3.4404 -1.6265 35 1 1.1140 -6.6497 -0.5620 36 1 2.3231 -9.0803 -1.1834 37 1 0.7938 -8.3129 -1.7099 38 1 0.9518 -9.2603 -3.9278 39 1 1.6096 -10.5910 -2.9174 40 1 5.0268 -9.9895 -3.5059 41 1 6.1240 -8.7700 -6.0879 42 1 3.1503 -7.2657 -4.5024 43 1 4.4547 -7.6844 -3.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425613049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:08 Heat of formation + Delta-G solvation = 13.794662 kcal Electronic energy + Delta-G solvation = -29901.670641 eV Core-core repulsion = 25531.755853 eV Total energy + Delta-G solvation = -4369.914788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.73180 -42.67670 -40.10964 -37.76958 -35.31443 -34.52091 -34.34426 -32.29465 -32.27485 -31.96908 -30.80830 -29.97959 -27.90585 -26.89822 -25.37718 -23.74407 -23.26562 -22.52987 -21.50141 -20.46656 -19.70484 -19.66686 -18.15229 -17.61045 -17.53786 -17.15407 -16.53103 -16.39962 -16.34400 -15.58263 -15.14884 -14.85590 -14.55260 -14.39101 -13.65010 -13.60031 -13.51899 -13.30286 -13.11962 -13.06447 -13.05177 -12.92961 -12.45731 -12.16840 -11.88086 -11.69653 -11.47569 -11.39062 -11.11929 -10.91923 -10.77862 -10.51535 -10.32622 -10.25567 -9.87034 -9.41639 -9.38671 -8.82780 -8.75034 -8.55541 -8.41358 -8.00018 -6.34871 -4.43506 1.01284 1.60744 2.08842 2.34442 2.45370 2.58122 3.16914 3.17830 3.26153 3.29279 3.51637 3.97391 4.22783 4.30124 4.37808 4.70472 4.84150 4.92202 5.03215 5.10075 5.15002 5.21844 5.26422 5.35837 5.45672 5.53191 5.59157 5.66906 5.85329 5.87702 5.93813 6.06698 6.13229 6.38835 6.54253 6.59149 6.74905 6.77462 6.80464 7.00783 7.18579 7.35415 7.66884 7.94355 8.09986 8.36659 8.60005 8.71555 9.21929 9.31318 10.73023 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.002310 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.436155 B =12120.051635 C =13061.759030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.036 3.964 3 O -0.176 6.176 4 C -0.036 4.036 5 C -0.180 4.180 6 C -0.127 4.127 7 C 0.039 3.961 8 C -0.197 4.197 9 C 0.279 3.721 10 N -0.646 5.646 11 C 0.722 3.278 12 O -0.572 6.572 13 N -0.618 5.618 14 C 0.096 3.904 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.121 3.879 27 N -0.400 5.400 28 O 0.097 5.903 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.209 0.791 33 H 0.159 0.841 34 H 0.194 0.806 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.383 0.617 41 H 0.270 0.730 42 H 0.069 0.931 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 15.079 11.513 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 O -0.072 6.072 4 C -0.102 4.102 5 C -0.199 4.199 6 C -0.129 4.129 7 C -0.024 4.024 8 C -0.219 4.219 9 C 0.029 3.971 10 N -0.301 5.301 11 C 0.423 3.577 12 O -0.448 6.448 13 N -0.355 5.355 14 C -0.027 4.027 15 C -0.153 4.153 16 C 0.208 3.792 17 O -0.393 6.393 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.001 4.001 27 N -0.117 5.117 28 O 0.037 5.963 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.226 0.774 33 H 0.177 0.823 34 H 0.211 0.789 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.233 0.767 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.669 15.266 12.188 20.986 hybrid contribution 1.163 -0.419 -1.636 2.050 sum -6.506 14.847 10.553 19.343 Atomic orbital electron populations 1.20431 0.84269 1.04536 1.04257 1.22666 0.93915 0.83317 1.01664 1.83820 1.17060 1.34480 1.71876 1.23863 0.83628 0.96084 1.06586 1.22794 0.96282 0.94231 1.06638 1.18539 0.93154 0.87570 1.13649 1.21292 0.94730 0.93063 0.93346 1.22938 1.05565 0.88931 1.04516 1.20007 0.95967 0.87680 0.93421 1.41684 1.46161 1.07492 1.34748 1.15238 0.80134 0.83070 0.79251 1.90842 1.47411 1.43654 1.62939 1.47992 1.45845 1.05560 1.36063 1.22438 0.94513 0.86973 0.98774 1.22769 0.98830 0.98474 0.95197 1.19519 0.84576 0.84353 0.90780 1.86113 1.20704 1.66059 1.66432 1.21509 0.99263 1.44610 0.92165 0.91377 1.25083 0.95224 0.93441 0.99557 1.69698 1.02798 1.43878 1.36800 0.86333 0.78324 0.78128 0.84052 1.19578 1.20734 1.20713 1.23050 0.93135 0.98714 0.85154 1.73970 1.24686 0.94193 1.18849 1.84895 1.48924 1.15696 1.46777 0.89167 0.89910 0.89103 0.77401 0.82347 0.78898 0.75092 0.91347 0.92297 0.90243 0.90283 0.76653 0.91972 0.91243 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.23 36.01 0.37 -0.20 16 2 C 0.04 0.36 7.37 -35.07 -0.26 0.11 16 3 O -0.18 -1.70 10.54 6.89 0.07 -1.63 16 4 C -0.04 -0.29 12.04 29.34 0.35 0.06 16 5 C -0.18 -1.84 11.15 -37.48 -0.42 -2.26 16 6 C -0.13 -1.52 6.25 -103.26 -0.65 -2.16 16 7 C 0.04 0.55 6.90 -36.22 -0.25 0.30 16 8 C -0.20 -3.17 9.83 -38.85 -0.38 -3.56 16 9 C 0.28 4.58 8.16 -154.86 -1.26 3.32 16 10 N -0.65 -10.48 5.38 -15.73 -0.08 -10.56 16 11 C 0.72 14.12 8.45 -86.91 -0.73 13.38 16 12 O -0.57 -12.77 13.94 5.30 0.07 -12.69 16 13 N -0.62 -12.15 3.32 -176.10 -0.59 -12.74 16 14 C 0.10 1.58 6.58 -2.41 -0.02 1.56 16 15 C -0.11 -2.15 6.24 -24.46 -0.15 -2.30 16 16 C 0.25 5.72 0.85 -89.93 -0.08 5.65 16 17 O -0.58 -14.06 13.07 -35.23 -0.46 -14.52 16 18 C -0.54 -13.54 8.13 -34.44 -0.28 -13.82 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 21 N -0.89 -23.08 10.96 55.43 0.61 -22.47 16 22 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 C 0.12 2.80 5.23 -3.07 -0.02 2.78 16 27 N -0.40 -6.18 12.09 31.26 0.38 -5.80 16 28 O 0.10 1.38 11.21 15.84 0.18 1.56 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 32 H 0.21 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.19 3.40 6.20 -52.49 -0.33 3.07 16 35 H 0.41 5.59 7.30 -40.82 -0.30 5.30 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 38 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.38 9.47 7.45 45.56 0.34 9.81 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.07 1.76 7.82 -51.92 -0.41 1.35 16 43 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -30.03 368.79 -7.54 -37.57 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.39 Total: 16.22 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -3.87 Total: 4.55 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.32 Total: -51.57 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.14 Total: -27.28 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.03 -7.54 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425613049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.361 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds