Wall clock time and date at job start Wed Apr 1 2020 04:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46852 * 2 1 4 4 N 1.46495 * 109.46935 * 119.99930 * 2 1 3 5 5 C 1.34780 * 120.00178 * 294.72757 * 4 2 1 6 6 O 1.21579 * 119.99689 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00308 * 180.02562 * 5 4 2 8 8 C 1.39458 * 120.00060 * 184.70464 * 7 5 4 9 9 C 1.38646 * 119.64611 * 174.61964 * 8 7 5 10 10 C 1.40815 * 118.67200 * 179.97438 * 9 8 7 11 11 C 1.41549 * 120.99952 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00199 * 151.50759 * 11 10 9 13 13 C 1.40028 * 119.99563 * 331.50896 * 11 10 9 14 14 N 1.30744 * 120.00210 * 349.36682 * 13 11 10 15 15 Si 1.86801 * 119.99841 * 169.36282 * 13 11 10 16 16 H 1.48497 * 109.46858 * 59.99843 * 15 13 11 17 17 H 1.48505 * 109.47316 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47257 * 299.99884 * 15 13 11 19 19 C 1.41168 * 118.00742 * 359.97438 * 10 9 8 20 20 C 1.36591 * 119.12806 * 0.02562 * 19 10 9 21 21 N 1.32075 * 121.25338 * 359.72260 * 20 19 10 22 22 C 1.53000 * 109.47196 * 240.00121 * 2 1 3 23 23 H 1.09005 * 109.46820 * 300.46816 * 22 2 1 24 24 O 1.42901 * 109.47178 * 60.46658 * 22 2 1 25 25 C 1.52998 * 109.46996 * 180.47060 * 22 2 1 26 26 F 1.39904 * 109.47285 * 54.12128 * 25 22 2 27 27 F 1.39896 * 109.47032 * 174.12192 * 25 22 2 28 28 F 1.39896 * 109.47137 * 294.12197 * 25 22 2 29 29 H 1.08995 * 109.47407 * 306.42345 * 1 2 3 30 30 H 1.09007 * 109.46974 * 66.42165 * 1 2 3 31 31 H 1.09000 * 109.47306 * 186.42540 * 1 2 3 32 32 H 1.09002 * 109.46784 * 171.08616 * 3 2 1 33 33 H 1.08994 * 109.47258 * 291.08492 * 3 2 1 34 34 H 1.09000 * 109.47136 * 51.09560 * 3 2 1 35 35 H 0.97001 * 120.00407 * 114.72862 * 4 2 1 36 36 H 0.96997 * 119.99623 * 4.97120 * 7 5 4 37 37 H 1.07993 * 120.66309 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99987 * 180.02562 * 14 13 11 39 39 H 1.07995 * 120.43607 * 179.97438 * 19 10 9 40 40 H 1.07993 * 119.37258 * 179.97438 * 20 19 10 41 41 H 0.96699 * 113.99467 * 60.00651 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7826 -0.1715 2.4174 6 8 1.1651 0.8702 2.5263 7 7 2.2322 -0.8065 3.5179 8 6 1.9051 -0.3232 4.7845 9 6 2.2761 -1.0428 5.9100 10 6 1.9358 -0.5356 7.1788 11 6 2.2895 -1.2300 8.3604 12 1 2.4559 -0.6849 9.2778 13 6 2.4238 -2.6236 8.3398 14 7 2.0248 -3.3035 7.2967 15 14 3.1731 -3.5115 9.8026 16 1 2.3553 -3.2477 11.0137 17 1 3.2019 -4.9717 9.5337 18 1 4.5573 -3.0210 10.0234 19 6 1.2312 0.6863 7.2370 20 6 0.9088 1.3240 6.0729 21 7 1.2484 0.8216 4.8996 22 6 2.0400 -0.7212 -1.2492 23 1 1.6698 -1.7465 -1.2534 24 8 1.5727 -0.0413 -2.4160 25 6 3.5700 -0.7315 -1.2433 26 9 4.0280 -1.2769 -0.0391 27 9 4.0353 -1.5046 -2.3123 28 9 4.0456 0.5778 -1.3729 29 1 -0.3634 0.6101 0.8269 30 1 -0.3633 0.4111 -0.9419 31 1 -0.3634 -1.0212 0.1150 32 1 3.1183 1.4467 0.1592 33 1 1.8125 1.9084 -0.9588 34 1 1.5526 2.0003 0.7997 35 1 2.5113 -1.5214 1.1093 36 1 2.7866 -1.5975 3.4289 37 1 2.8160 -1.9733 5.8156 38 1 2.1175 -4.2690 7.2826 39 1 0.9500 1.1109 8.1894 40 1 0.3694 2.2588 6.1128 41 1 1.8645 0.8785 -2.4785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434741417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:42 Heat of formation + Delta-G solvation = -175.849459 kcal Electronic energy + Delta-G solvation = -31693.991723 eV Core-core repulsion = 26773.996609 eV Total energy + Delta-G solvation = -4919.995114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.54686 -48.04751 -47.98706 -40.35279 -38.90582 -37.80171 -35.35360 -34.17722 -33.75296 -31.34533 -30.47029 -29.33301 -28.29544 -27.47718 -25.98450 -24.16526 -22.45112 -21.90469 -20.63267 -19.90751 -19.17692 -18.98105 -18.55206 -18.15959 -17.60083 -16.91093 -15.69387 -15.63954 -15.21320 -15.07375 -14.96516 -14.76502 -14.53423 -14.37976 -14.32214 -14.20457 -14.13440 -14.02076 -13.75198 -13.42674 -13.28878 -12.90232 -12.62390 -12.51832 -12.39204 -12.14655 -11.93800 -11.77607 -11.45133 -11.22167 -11.17878 -10.90275 -10.75282 -10.28116 -10.14428 -9.75446 -9.43515 -9.36812 -8.96352 -7.94416 -7.73536 -7.02885 -6.77334 -4.62350 2.24463 2.67913 2.73961 2.81361 3.01031 3.04040 3.23912 3.26779 3.29344 3.57558 3.80173 3.85987 3.90051 4.20556 4.44200 4.51588 4.70387 4.91462 5.03429 5.43898 5.62269 5.67975 5.72954 5.82197 5.91927 6.26816 6.34102 6.51499 6.55405 6.63463 6.72421 6.78816 6.94901 7.10801 7.22429 7.41032 7.47644 7.85748 8.09389 8.34972 8.45134 8.71865 8.76005 9.13901 9.70163 10.10861 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002780 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.847819 B =10067.897640 C =11016.122516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.167 3.833 3 C -0.183 4.183 4 N -0.753 5.753 5 C 0.699 3.301 6 O -0.526 6.526 7 N -0.666 5.666 8 C 0.354 3.646 9 C -0.240 4.240 10 C 0.146 3.854 11 C -0.458 4.458 12 H 0.081 0.919 13 C 0.077 3.923 14 N -0.796 5.796 15 Si 0.913 3.087 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.281 4.281 20 C 0.118 3.882 21 N -0.549 5.549 22 C 0.073 3.927 23 H 0.147 0.853 24 O -0.520 6.520 25 C 0.421 3.579 26 F -0.172 7.172 27 F -0.178 7.178 28 F -0.176 7.176 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.394 0.606 36 H 0.404 0.596 37 H 0.127 0.873 38 H 0.281 0.719 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 0.544 -17.062 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.079 3.921 3 C -0.240 4.240 4 N -0.417 5.417 5 C 0.398 3.602 6 O -0.396 6.396 7 N -0.314 5.314 8 C 0.128 3.872 9 C -0.266 4.266 10 C 0.138 3.862 11 C -0.490 4.490 12 H 0.099 0.901 13 C -0.141 4.141 14 N -0.422 5.422 15 Si 0.738 3.262 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.305 4.305 20 C -0.035 4.035 21 N -0.268 5.268 22 C 0.011 3.989 23 H 0.164 0.836 24 O -0.327 6.327 25 C 0.366 3.634 26 F -0.153 7.153 27 F -0.159 7.159 28 F -0.157 7.157 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.232 0.768 36 H 0.238 0.762 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.150 1.182 -18.019 18.094 hybrid contribution 1.669 -1.440 1.459 2.643 sum 2.819 -0.258 -16.560 16.800 Atomic orbital electron populations 1.22152 0.91969 1.03254 1.03869 1.20619 0.96352 0.93057 0.82038 1.22622 1.02889 0.94853 1.03672 1.45582 1.63074 1.28800 1.04258 1.15932 0.80540 0.83967 0.79722 1.90944 1.42762 1.21598 1.84335 1.42543 1.54063 1.31234 1.03526 1.17946 0.95436 0.91402 0.82410 1.21519 1.10759 1.03609 0.90711 1.17557 0.86324 0.89789 0.92546 1.19528 1.41755 0.91465 0.96250 0.90102 1.25920 0.92790 0.98057 0.97361 1.69747 1.34324 1.08831 1.29266 0.86282 0.80498 0.78006 0.81432 1.18941 1.20302 1.18800 1.21710 1.09377 1.01576 0.97849 1.21478 0.96787 0.97672 0.87599 1.67199 1.19793 1.12548 1.27302 1.23422 0.85612 1.01419 0.88485 0.83566 1.86713 1.75325 1.30557 1.40055 1.21668 0.93905 0.74004 0.73804 1.93082 1.90570 1.85880 1.45803 1.93218 1.90747 1.75359 1.56589 1.93165 1.90493 1.36669 1.95411 0.89421 0.91124 0.92288 0.91313 0.92198 0.87934 0.76800 0.76193 0.85510 0.90794 0.88029 0.86034 0.76055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.34 37.16 0.31 -1.44 16 2 C 0.17 1.82 0.58 -131.82 -0.08 1.74 16 3 C -0.18 -2.10 6.90 37.16 0.26 -1.85 16 4 N -0.75 -9.73 4.23 -52.42 -0.22 -9.96 16 5 C 0.70 12.64 7.96 -86.91 -0.69 11.95 16 6 O -0.53 -11.22 11.01 5.30 0.06 -11.16 16 7 N -0.67 -12.80 5.40 -15.86 -0.09 -12.89 16 8 C 0.35 8.43 7.42 -154.68 -1.15 7.29 16 9 C -0.24 -6.01 8.59 -38.46 -0.33 -6.34 16 10 C 0.15 3.81 5.57 -106.55 -0.59 3.21 16 11 C -0.46 -11.70 9.12 -37.65 -0.34 -12.05 16 12 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 13 C 0.08 1.84 5.29 -17.34 -0.09 1.75 16 14 N -0.80 -19.52 10.89 55.55 0.60 -18.91 16 15 Si 0.91 17.90 29.57 -169.99 -5.03 12.87 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 C -0.28 -6.83 9.85 -39.06 -0.38 -7.22 16 20 C 0.12 2.80 11.10 -18.04 -0.20 2.60 16 21 N -0.55 -13.72 7.86 -12.76 -0.10 -13.82 16 22 C 0.07 0.61 2.59 -26.73 -0.07 0.54 16 23 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 24 O -0.52 -3.97 12.52 -35.23 -0.44 -4.42 16 25 C 0.42 3.96 2.76 37.16 0.10 4.06 16 26 F -0.17 -1.77 14.05 2.25 0.03 -1.74 16 27 F -0.18 -1.75 17.31 2.25 0.04 -1.71 16 28 F -0.18 -1.74 13.67 2.25 0.03 -1.71 16 29 H 0.09 1.28 6.69 -51.93 -0.35 0.94 16 30 H 0.07 0.66 7.51 -51.92 -0.39 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.84 6.12 -51.93 -0.32 0.53 16 33 H 0.06 0.49 6.36 -51.93 -0.33 0.16 16 34 H 0.10 1.54 6.12 -51.93 -0.32 1.22 16 35 H 0.39 4.27 6.30 -40.82 -0.26 4.01 16 36 H 0.40 6.46 8.72 -40.82 -0.36 6.11 16 37 H 0.13 3.16 6.32 -52.49 -0.33 2.83 16 38 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 39 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 41 H 0.39 2.05 6.62 45.56 0.30 2.35 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -30.96 343.20 -6.78 -37.74 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -3.58 Total: 16.28 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.26 Total: 4.25 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.20 Total: -55.58 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.38 Total: -15.58 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.10 Total: -5.17 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.96 -6.78 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434741417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.107 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds