Wall clock time and date at job start Wed Apr 1 2020 04:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46852 * 2 1 4 4 N 1.46495 * 109.46935 * 119.99930 * 2 1 3 5 5 C 1.34780 * 120.00178 * 294.72757 * 4 2 1 6 6 O 1.21579 * 119.99689 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00308 * 180.02562 * 5 4 2 8 8 C 1.39458 * 120.00060 * 184.70464 * 7 5 4 9 9 C 1.38646 * 119.64611 * 174.61964 * 8 7 5 10 10 C 1.40815 * 118.67200 * 179.97438 * 9 8 7 11 11 C 1.41549 * 120.99952 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00199 * 151.50759 * 11 10 9 13 13 C 1.40028 * 119.99563 * 331.50896 * 11 10 9 14 14 N 1.30744 * 120.00210 * 349.36682 * 13 11 10 15 15 Si 1.86801 * 119.99841 * 169.36282 * 13 11 10 16 16 H 1.48497 * 109.46858 * 59.99843 * 15 13 11 17 17 H 1.48505 * 109.47316 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47257 * 299.99884 * 15 13 11 19 19 C 1.41168 * 118.00742 * 359.97438 * 10 9 8 20 20 C 1.36591 * 119.12806 * 0.02562 * 19 10 9 21 21 N 1.32075 * 121.25338 * 359.72260 * 20 19 10 22 22 C 1.53000 * 109.47196 * 240.00121 * 2 1 3 23 23 H 1.09005 * 109.46820 * 300.46816 * 22 2 1 24 24 O 1.42901 * 109.47178 * 60.46658 * 22 2 1 25 25 C 1.52998 * 109.46996 * 180.47060 * 22 2 1 26 26 F 1.39904 * 109.47285 * 54.12128 * 25 22 2 27 27 F 1.39896 * 109.47032 * 174.12192 * 25 22 2 28 28 F 1.39896 * 109.47137 * 294.12197 * 25 22 2 29 29 H 1.08995 * 109.47407 * 306.42345 * 1 2 3 30 30 H 1.09007 * 109.46974 * 66.42165 * 1 2 3 31 31 H 1.09000 * 109.47306 * 186.42540 * 1 2 3 32 32 H 1.09002 * 109.46784 * 171.08616 * 3 2 1 33 33 H 1.08994 * 109.47258 * 291.08492 * 3 2 1 34 34 H 1.09000 * 109.47136 * 51.09560 * 3 2 1 35 35 H 0.97001 * 120.00407 * 114.72862 * 4 2 1 36 36 H 0.96997 * 119.99623 * 4.97120 * 7 5 4 37 37 H 1.07993 * 120.66309 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99987 * 180.02562 * 14 13 11 39 39 H 1.07995 * 120.43607 * 179.97438 * 19 10 9 40 40 H 1.07993 * 119.37258 * 179.97438 * 20 19 10 41 41 H 0.96699 * 113.99467 * 60.00651 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7826 -0.1715 2.4174 6 8 1.1651 0.8702 2.5263 7 7 2.2322 -0.8065 3.5179 8 6 1.9051 -0.3232 4.7845 9 6 2.2761 -1.0428 5.9100 10 6 1.9358 -0.5356 7.1788 11 6 2.2895 -1.2300 8.3604 12 1 2.4559 -0.6849 9.2778 13 6 2.4238 -2.6236 8.3398 14 7 2.0248 -3.3035 7.2967 15 14 3.1731 -3.5115 9.8026 16 1 2.3553 -3.2477 11.0137 17 1 3.2019 -4.9717 9.5337 18 1 4.5573 -3.0210 10.0234 19 6 1.2312 0.6863 7.2370 20 6 0.9088 1.3240 6.0729 21 7 1.2484 0.8216 4.8996 22 6 2.0400 -0.7212 -1.2492 23 1 1.6698 -1.7465 -1.2534 24 8 1.5727 -0.0413 -2.4160 25 6 3.5700 -0.7315 -1.2433 26 9 4.0280 -1.2769 -0.0391 27 9 4.0353 -1.5046 -2.3123 28 9 4.0456 0.5778 -1.3729 29 1 -0.3634 0.6101 0.8269 30 1 -0.3633 0.4111 -0.9419 31 1 -0.3634 -1.0212 0.1150 32 1 3.1183 1.4467 0.1592 33 1 1.8125 1.9084 -0.9588 34 1 1.5526 2.0003 0.7997 35 1 2.5113 -1.5214 1.1093 36 1 2.7866 -1.5975 3.4289 37 1 2.8160 -1.9733 5.8156 38 1 2.1175 -4.2690 7.2826 39 1 0.9500 1.1109 8.1894 40 1 0.3694 2.2588 6.1128 41 1 1.8645 0.8785 -2.4785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434741417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:41 Heat of formation + Delta-G solvation = -197.188564 kcal Electronic energy + Delta-G solvation = -31694.917056 eV Core-core repulsion = 26773.996609 eV Total energy + Delta-G solvation = -4920.920447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.31335 -48.82801 -48.74889 -41.66695 -40.30567 -39.10748 -36.49501 -35.84066 -35.43134 -32.64655 -32.26122 -30.10321 -29.99220 -28.40599 -27.87644 -25.04063 -23.92874 -23.68705 -22.04220 -21.13125 -20.14437 -19.74774 -19.49021 -19.34511 -19.14009 -18.15269 -17.19664 -16.87092 -16.46939 -16.35361 -16.03974 -15.96320 -15.91382 -15.55052 -15.32092 -15.20570 -15.12650 -14.95931 -14.85950 -14.63206 -14.53880 -14.31760 -14.26598 -14.03887 -13.36505 -13.19770 -13.08969 -12.90344 -12.86793 -12.65201 -12.56300 -12.16705 -12.04231 -11.91476 -11.59197 -11.43454 -11.13612 -10.91552 -10.16639 -9.86241 -9.58081 -8.82084 -8.58341 -6.55363 0.85719 1.03335 1.42129 1.47589 1.52786 1.53606 1.59228 2.21720 2.30252 2.51161 2.58027 2.76315 2.86952 3.12117 3.23585 3.44971 3.70114 3.78160 3.98838 4.15457 4.24559 4.56881 4.69503 4.75078 4.81297 4.85425 4.86217 4.94623 5.10926 5.24604 5.30812 5.35075 5.49342 5.51679 5.68180 5.83683 5.98780 6.20354 6.28698 6.57951 6.81567 6.85268 6.97319 7.64346 7.91177 8.31833 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002780 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.847819 B =10067.897640 C =11016.122516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.163 3.837 3 C -0.179 4.179 4 N -0.734 5.734 5 C 0.696 3.304 6 O -0.558 6.558 7 N -0.663 5.663 8 C 0.354 3.646 9 C -0.257 4.257 10 C 0.118 3.882 11 C -0.489 4.489 12 H 0.083 0.917 13 C 0.039 3.961 14 N -0.819 5.819 15 Si 0.987 3.013 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.260 1.260 19 C -0.295 4.295 20 C 0.114 3.886 21 N -0.570 5.570 22 C 0.090 3.910 23 H 0.168 0.832 24 O -0.518 6.518 25 C 0.420 3.580 26 F -0.179 7.179 27 F -0.178 7.178 28 F -0.179 7.179 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.417 0.583 37 H 0.122 0.878 38 H 0.290 0.710 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -0.546 -18.231 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.076 3.924 3 C -0.237 4.237 4 N -0.398 5.398 5 C 0.396 3.604 6 O -0.432 6.432 7 N -0.312 5.312 8 C 0.127 3.873 9 C -0.283 4.283 10 C 0.109 3.891 11 C -0.520 4.520 12 H 0.101 0.899 13 C -0.178 4.178 14 N -0.445 5.445 15 Si 0.808 3.192 16 H -0.186 1.186 17 H -0.191 1.191 18 H -0.184 1.184 19 C -0.319 4.319 20 C -0.040 4.040 21 N -0.290 5.290 22 C 0.027 3.973 23 H 0.186 0.814 24 O -0.326 6.326 25 C 0.365 3.635 26 F -0.161 7.161 27 F -0.159 7.159 28 F -0.161 7.161 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.247 0.753 36 H 0.254 0.746 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.529 0.077 -19.256 19.316 hybrid contribution 1.534 -1.056 1.714 2.531 sum 3.064 -0.979 -17.542 17.834 Atomic orbital electron populations 1.22067 0.92015 1.02961 1.03607 1.20803 0.96324 0.93039 0.82193 1.22551 1.01807 0.95084 1.04233 1.45424 1.62167 1.28982 1.03197 1.16080 0.80175 0.83587 0.80599 1.90936 1.44097 1.23096 1.85040 1.42474 1.54296 1.31729 1.02673 1.18135 0.94433 0.90879 0.83884 1.21485 1.11881 1.03848 0.91117 1.17980 0.86936 0.90771 0.93364 1.19823 1.43141 0.92719 0.96315 0.89923 1.26768 0.92511 0.98169 1.00305 1.69792 1.34155 1.09621 1.30930 0.85168 0.79438 0.77024 0.77571 1.18580 1.19102 1.18420 1.21889 1.09771 1.01525 0.98743 1.21926 0.96358 0.98421 0.87246 1.67341 1.20625 1.13193 1.27832 1.23295 0.84669 1.02164 0.87132 0.81432 1.86727 1.75145 1.31526 1.39154 1.21843 0.94394 0.73775 0.73480 1.93064 1.90712 1.85993 1.46310 1.93219 1.90802 1.75368 1.56560 1.93161 1.90628 1.36914 1.95392 0.93048 0.88754 0.91782 0.92150 0.88749 0.91578 0.75312 0.74639 0.86018 0.89884 0.86736 0.83445 0.74749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.34 71.98 0.60 -2.56 16 2 C 0.16 3.29 0.58 3.61 0.00 3.29 16 3 C -0.18 -3.95 6.90 71.98 0.50 -3.45 16 4 N -0.73 -18.27 4.23 -438.01 -1.85 -20.12 16 5 C 0.70 25.30 7.96 179.05 1.42 26.73 16 6 O -0.56 -24.37 11.01 -3.96 -0.04 -24.41 16 7 N -0.66 -25.76 5.40 -322.37 -1.74 -27.50 16 8 C 0.35 17.24 7.42 132.76 0.98 18.22 16 9 C -0.26 -13.22 8.59 23.00 0.20 -13.02 16 10 C 0.12 6.29 5.57 -21.11 -0.12 6.17 16 11 C -0.49 -25.35 9.12 23.52 0.21 -25.14 16 12 H 0.08 4.10 7.87 -2.91 -0.02 4.07 16 13 C 0.04 1.85 5.29 85.29 0.45 2.30 16 14 N -0.82 -40.26 10.89 21.84 0.24 -40.03 16 15 Si 0.99 36.10 29.57 68.60 2.03 38.13 16 16 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 17 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 18 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 19 C -0.30 -14.65 9.85 22.60 0.22 -14.42 16 20 C 0.11 5.46 11.10 84.27 0.94 6.40 16 21 N -0.57 -29.02 7.86 -194.27 -1.53 -30.54 16 22 C 0.09 1.24 2.59 30.59 0.08 1.32 16 23 H 0.17 1.68 8.14 -2.38 -0.02 1.66 16 24 O -0.52 -6.12 12.52 -148.98 -1.87 -7.98 16 25 C 0.42 6.94 2.76 71.98 0.20 7.13 16 26 F -0.18 -3.38 14.05 44.97 0.63 -2.75 16 27 F -0.18 -3.08 17.31 44.97 0.78 -2.30 16 28 F -0.18 -3.20 13.67 44.97 0.61 -2.58 16 29 H 0.05 1.51 6.69 -2.39 -0.02 1.49 16 30 H 0.09 1.54 7.51 -2.38 -0.02 1.52 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.43 6.12 -2.39 -0.01 1.42 16 33 H 0.09 1.35 6.36 -2.39 -0.02 1.33 16 34 H 0.07 2.01 6.12 -2.39 -0.01 2.00 16 35 H 0.41 8.18 6.30 -92.71 -0.58 7.59 16 36 H 0.42 13.38 8.72 -92.71 -0.81 12.57 16 37 H 0.12 6.24 6.32 -2.91 -0.02 6.22 16 38 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 39 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 40 H 0.15 6.10 8.06 -2.91 -0.02 6.07 16 41 H 0.40 2.82 6.62 -74.06 -0.49 2.33 16 Total: -1.00 -68.29 343.20 2.22 -66.07 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.74 Total: 41.05 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.69 Total: 12.97 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.88 Total: -118.19 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.91 Total: -32.40 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 2.03 Total: -7.64 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -68.29 2.22 -66.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434741417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.116 kcal (2) G-P(sol) polarization free energy of solvation -68.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds