Wall clock time and date at job start Wed Apr 1 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34902 * 116.99835 * 2 1 4 4 O 1.21622 * 119.99848 * 0.02562 * 3 2 1 5 5 C 1.46470 * 120.00048 * 179.97438 * 3 2 1 6 6 C 1.36640 * 125.99613 * 179.97438 * 5 3 2 7 7 C 1.40310 * 106.70225 * 179.97438 * 6 5 3 8 8 C 1.35175 * 107.12982 * 0.02562 * 7 6 5 9 9 C 1.50693 * 125.61329 * 179.73441 * 8 7 6 10 10 N 1.46493 * 109.47227 * 90.00273 * 9 8 7 11 11 C 1.34779 * 120.00229 * 180.02562 * 10 9 8 12 12 O 1.21606 * 119.99965 * 359.97438 * 11 10 9 13 13 C 1.47435 * 120.00247 * 180.02562 * 11 10 9 14 14 C 1.41291 * 126.40989 * 359.67737 * 13 11 10 15 15 N 1.30450 * 108.01928 * 179.88163 * 14 13 11 16 16 N 1.39937 * 108.89651 * 0.38470 * 15 14 13 17 17 C 1.46499 * 125.75362 * 179.76773 * 16 15 14 18 18 C 1.50699 * 109.47492 * 269.98027 * 17 16 15 19 19 H 1.07999 * 119.99762 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00148 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99998 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00210 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46752 * 60.00282 * 22 20 18 24 24 H 1.48499 * 109.47340 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47320 * 300.00482 * 22 20 18 26 26 C 1.34260 * 108.49242 * 359.75419 * 16 15 14 27 27 C 1.50699 * 126.29142 * 179.97438 * 26 16 15 28 28 O 1.33911 * 108.77623 * 0.02562 * 8 7 6 29 29 H 1.08998 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47196 * 299.99481 * 1 2 3 31 31 H 1.09002 * 109.47147 * 60.00297 * 1 2 3 32 32 H 1.07999 * 126.65184 * 359.97438 * 6 5 3 33 33 H 1.08003 * 126.43833 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47401 * 210.00712 * 9 8 7 35 35 H 1.09001 * 109.47053 * 330.00150 * 9 8 7 36 36 H 0.97002 * 120.00323 * 0.02562 * 10 9 8 37 37 H 1.07997 * 125.99344 * 0.02562 * 14 13 11 38 38 H 1.08996 * 109.47152 * 29.98343 * 17 16 15 39 39 H 1.08998 * 109.46928 * 149.98087 * 17 16 15 40 40 H 0.97004 * 119.99995 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.47031 * 269.99651 * 27 26 16 42 42 H 1.08994 * 109.47158 * 29.99870 * 27 26 16 43 43 H 1.09000 * 109.46889 * 150.00146 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5271 1.2787 0.0006 6 6 4.2711 2.4248 0.0001 7 6 5.6179 2.0311 0.0016 8 6 5.6377 0.6795 0.0022 9 6 6.8754 -0.1800 -0.0019 10 7 7.2816 -0.4578 1.3779 11 6 8.3713 -1.2130 1.6205 12 8 9.0170 -1.6642 0.6941 13 6 8.7798 -1.4931 3.0092 14 6 8.1362 -1.0362 4.1811 15 7 8.7947 -1.4965 5.2087 16 7 9.8802 -2.2514 4.7503 17 6 10.8656 -2.9331 5.5932 18 6 12.0140 -1.9999 5.8785 19 1 12.0104 -0.9993 5.4722 20 6 13.0692 -2.4236 6.6581 21 7 13.0738 -3.6424 7.1525 22 14 14.4931 -1.2672 7.0112 23 1 13.9883 -0.0612 7.7156 24 1 15.4919 -1.9582 7.8657 25 1 15.1313 -0.8629 5.7328 26 6 9.8661 -2.2458 3.4078 27 6 10.8548 -2.9342 2.5025 28 8 4.3763 0.2300 0.0007 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8955 3.4373 -0.0011 33 1 6.4774 2.6852 0.0021 34 1 6.6645 -1.1184 -0.5146 35 1 7.6796 0.3436 -0.5190 36 1 6.7664 -0.0983 2.1169 37 1 7.2525 -0.4166 4.2194 38 1 10.3974 -3.2306 6.5314 39 1 11.2364 -3.8178 5.0756 40 1 13.8165 -3.9406 7.7007 41 1 11.6788 -2.2557 2.2816 42 1 11.2407 -3.8256 2.9970 43 1 10.3599 -3.2193 1.5741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459736450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:14 Heat of formation + Delta-G solvation = -33.296783 kcal Electronic energy + Delta-G solvation = -28655.409812 eV Core-core repulsion = 24283.452986 eV Total energy + Delta-G solvation = -4371.956826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.26137 -40.83696 -40.63692 -38.90236 -37.02522 -35.13033 -33.92420 -33.57768 -32.17367 -31.47042 -30.95451 -28.78713 -27.61842 -26.80746 -26.13464 -23.59952 -23.18482 -22.24485 -21.89156 -20.90934 -19.99762 -19.21002 -18.86948 -17.59443 -17.31822 -17.25461 -16.81013 -16.43611 -15.93853 -15.41858 -15.27794 -14.95506 -14.57327 -14.42258 -14.24997 -13.92778 -13.72145 -13.62937 -13.48716 -13.22412 -13.14240 -12.65895 -12.59815 -12.51219 -12.34934 -12.11591 -11.81202 -11.50559 -11.37267 -11.32916 -11.15569 -10.88819 -10.57680 -10.39701 -10.25064 -9.97957 -9.65093 -9.19609 -9.13382 -8.72353 -8.62934 -7.97336 -6.35220 -4.43310 0.28436 1.65120 1.77883 2.11309 2.39828 2.45995 2.74782 3.14872 3.18749 3.23009 3.27684 3.53352 3.82384 3.98437 4.22723 4.35804 4.38244 4.63339 4.72808 4.91417 4.97354 4.99665 5.03649 5.09170 5.14436 5.23975 5.34700 5.37867 5.54866 5.71174 5.71701 5.80033 5.88101 6.09386 6.27288 6.35911 6.43171 6.52925 6.76280 6.88374 7.11708 7.13263 7.52982 7.55792 7.74524 7.75804 8.32888 8.46051 8.61689 9.23628 10.72922 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.001810 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.186587 B =15462.307901 C =15630.127833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.554 3.446 4 O -0.487 6.487 5 C -0.064 4.064 6 C -0.101 4.101 7 C -0.199 4.199 8 C 0.020 3.980 9 C 0.201 3.799 10 N -0.735 5.735 11 C 0.609 3.391 12 O -0.552 6.552 13 C -0.334 4.334 14 C 0.059 3.941 15 N -0.295 5.295 16 N -0.313 5.313 17 C 0.251 3.749 18 C -0.541 4.541 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.909 3.091 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.168 3.832 27 C -0.093 4.093 28 O -0.142 6.142 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.402 0.598 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.270 0.730 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.360 7.827 -15.753 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C 0.399 3.601 4 O -0.376 6.376 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.219 4.219 8 C -0.033 4.033 9 C 0.077 3.923 10 N -0.389 5.389 11 C 0.400 3.600 12 O -0.431 6.431 13 C -0.350 4.350 14 C -0.128 4.128 15 N -0.114 5.114 16 N -0.090 5.090 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.030 3.970 27 C -0.151 4.151 28 O -0.037 6.037 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.237 0.763 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.959 7.193 -14.878 25.150 hybrid contribution 0.187 1.120 -0.091 1.139 sum -18.771 8.313 -14.969 25.407 Atomic orbital electron populations 1.23395 0.75068 1.04364 1.02924 1.86683 1.24200 1.31581 1.83830 1.19178 0.85484 0.82227 0.73227 1.90961 1.64342 1.35916 1.46396 1.20701 0.87928 0.86256 1.16595 1.22041 0.92317 0.98934 0.98759 1.21772 0.97928 0.94227 1.07967 1.22950 0.83842 0.94143 1.02370 1.19659 0.88315 0.98572 0.85709 1.45738 1.30630 1.55516 1.07024 1.17281 0.78571 0.76296 0.87826 1.90713 1.54203 1.52506 1.45650 1.19572 1.04851 1.17746 0.92782 1.23725 0.99560 0.99877 0.89678 1.77158 0.99309 1.11723 1.23234 1.49390 1.20047 1.35317 1.04196 1.19866 0.84187 0.92305 0.90272 1.21197 1.03433 0.99807 1.33487 0.91702 1.24922 0.98386 0.95538 0.94796 1.69905 1.32491 1.16784 1.33479 0.86375 0.80991 0.80536 0.78578 1.19904 1.20867 1.19843 1.21482 0.94925 0.94935 0.85615 1.20583 0.96743 1.00004 0.97817 1.84139 1.15265 1.34563 1.69694 0.87487 0.91393 0.91474 0.81506 0.81576 0.89193 0.87614 0.76305 0.80794 0.92480 0.92501 0.92036 0.89754 0.90812 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.27 16 2 O -0.35 -3.23 10.58 -42.49 -0.45 -3.68 16 3 C 0.55 5.67 7.93 34.05 0.27 5.94 16 4 O -0.49 -5.65 16.66 -19.36 -0.32 -5.97 16 5 C -0.06 -0.63 7.18 -36.85 -0.26 -0.89 16 6 C -0.10 -0.82 10.62 -39.38 -0.42 -1.23 16 7 C -0.20 -1.47 10.77 -39.89 -0.43 -1.90 16 8 C 0.02 0.17 6.68 -35.40 -0.24 -0.06 16 9 C 0.20 1.82 6.20 -5.20 -0.03 1.78 16 10 N -0.73 -8.15 5.54 -62.57 -0.35 -8.49 16 11 C 0.61 9.31 7.81 -12.51 -0.10 9.21 16 12 O -0.55 -9.65 14.84 5.27 0.08 -9.57 16 13 C -0.33 -5.82 6.13 -105.07 -0.64 -6.46 16 14 C 0.06 0.99 11.50 -16.98 -0.20 0.79 16 15 N -0.29 -6.20 12.50 30.86 0.39 -5.81 16 16 N -0.31 -6.91 3.56 -57.78 -0.21 -7.12 16 17 C 0.25 6.14 5.97 -5.19 -0.03 6.11 16 18 C -0.54 -14.36 9.39 -34.44 -0.32 -14.68 16 19 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 22 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.17 3.31 7.01 -81.60 -0.57 2.74 16 27 C -0.09 -1.63 9.57 36.01 0.34 -1.28 16 28 O -0.14 -1.44 10.67 4.74 0.05 -1.39 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 3.79 7.42 -40.82 -0.30 3.49 16 37 H 0.18 2.10 7.50 -52.49 -0.39 1.70 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.06 1.38 7.02 -51.93 -0.36 1.02 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.07 1.26 7.05 -51.93 -0.37 0.89 16 43 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -32.44 385.98 -6.05 -38.49 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.11 Total: 2.75 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.66 Total: 3.02 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.57 Total: -45.01 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.64 Total: -20.61 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.44 -6.05 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459736450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.196 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds