Wall clock time and date at job start Wed Apr 1 2020 04:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 110.91818 * 2 1 4 4 N 1.46498 * 109.47187 * 56.10141 * 3 2 1 5 5 C 1.36939 * 120.00285 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99592 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00445 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00280 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47444 * 59.99794 * 9 7 5 11 11 H 1.48506 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47308 * 299.99612 * 9 7 5 13 13 C 1.55165 * 111.00283 * 236.09709 * 2 1 3 14 14 C 1.54327 * 102.94078 * 277.42764 * 13 2 1 15 15 N 1.47022 * 107.27336 * 337.80587 * 14 13 2 16 16 C 1.34777 * 125.64528 * 178.90269 * 15 14 13 17 17 O 1.21611 * 119.99435 * 180.02562 * 16 15 14 18 18 C 1.47421 * 120.00256 * 0.02900 * 16 15 14 19 19 N 1.36069 * 126.44484 * 359.68489 * 18 16 15 20 20 C 1.29935 * 108.47053 * 179.82525 * 19 18 16 21 21 O 1.34052 * 109.24743 * 0.44318 * 20 19 18 22 22 C 1.34261 * 108.22367 * 359.72286 * 21 20 19 23 23 C 1.50702 * 126.52479 * 180.02562 * 22 21 20 24 24 F 1.39903 * 109.47039 * 269.97790 * 23 22 21 25 25 F 1.39902 * 109.47073 * 29.97692 * 23 22 21 26 26 F 1.39891 * 109.47033 * 149.97351 * 23 22 21 27 27 C 1.47425 * 108.70334 * 358.94217 * 15 14 13 28 28 H 1.09000 * 109.47440 * 183.90573 * 1 2 3 29 29 H 1.09000 * 109.46954 * 303.90243 * 1 2 3 30 30 H 1.08992 * 109.47615 * 63.90240 * 1 2 3 31 31 H 1.08999 * 109.47292 * 176.09823 * 3 2 1 32 32 H 1.09006 * 109.47371 * 296.09795 * 3 2 1 33 33 H 0.96999 * 120.00289 * 359.97438 * 4 3 2 34 34 H 0.97004 * 119.99972 * 180.02562 * 8 7 5 35 35 H 1.08993 * 110.71917 * 159.06495 * 13 2 1 36 36 H 1.09002 * 110.71751 * 35.79066 * 13 2 1 37 37 H 1.08997 * 109.87800 * 97.22770 * 14 13 2 38 38 H 1.09000 * 109.87987 * 218.23010 * 14 13 2 39 39 H 1.08000 * 125.37774 * 180.16999 * 20 19 18 40 40 H 1.08997 * 110.36855 * 142.96531 * 27 15 14 41 41 H 1.08999 * 110.36490 * 265.17846 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 7 1.5310 2.1603 1.1464 5 6 1.8809 3.4679 1.3539 6 1 2.5592 3.9599 0.6725 7 6 1.3639 4.1609 2.4398 8 7 0.5369 3.5612 3.2699 9 14 1.8418 5.9443 2.7232 10 1 1.4332 6.7586 1.5505 11 1 1.1590 6.4524 3.9401 12 1 3.3126 6.0400 2.9039 13 6 2.0861 -0.8080 -1.2023 14 6 2.0285 -2.2647 -0.6960 15 7 2.0139 -2.2160 0.7733 16 6 1.9457 -3.2829 1.5940 17 8 1.9398 -3.1232 2.7995 18 6 1.8783 -4.6434 1.0302 19 7 1.8703 -4.9717 -0.2903 20 6 1.8069 -6.2655 -0.3924 21 8 1.7627 -6.8040 0.8344 22 6 1.8063 -5.8068 1.7324 23 6 1.7809 -5.9490 3.2325 24 9 0.4561 -5.9211 3.6813 25 9 2.3708 -7.1645 3.5957 26 9 2.4924 -4.8937 3.8130 27 6 2.0853 -0.8067 1.2003 28 1 -0.3634 -1.0253 0.0700 29 1 -0.3633 0.5732 0.8530 30 1 -0.3634 0.4520 -0.9228 31 1 3.1636 1.4024 0.0699 32 1 1.7837 1.9299 -0.9229 33 1 0.9216 1.7185 1.7582 34 1 0.1753 4.0456 4.0286 35 1 3.1132 -0.5161 -1.4210 36 1 1.4523 -0.6792 -2.0797 37 1 1.1218 -2.7479 -1.0600 38 1 2.9049 -2.8125 -1.0424 39 1 1.7880 -6.8193 -1.3194 40 1 1.4672 -0.6461 2.0837 41 1 3.1180 -0.5240 1.4043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484102586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:45 Heat of formation + Delta-G solvation = -127.218185 kcal Electronic energy + Delta-G solvation = -31451.393933 eV Core-core repulsion = 26533.507629 eV Total energy + Delta-G solvation = -4917.886304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.44841 -48.02538 -47.85134 -44.17176 -40.17897 -38.09180 -35.62441 -34.78371 -32.67281 -32.02728 -30.49857 -29.13228 -27.54265 -26.41368 -25.61533 -24.30904 -23.28978 -22.57831 -21.94593 -20.41196 -19.04103 -18.93196 -18.82736 -18.53953 -17.74682 -17.34438 -16.95457 -16.50092 -16.04226 -15.42932 -14.98554 -14.80096 -14.65341 -14.52263 -14.44382 -14.29446 -14.01683 -13.94658 -13.88500 -13.63922 -13.23157 -13.06377 -12.92205 -12.69909 -12.25440 -12.08005 -11.98158 -11.77338 -11.64099 -11.30125 -10.99163 -10.80299 -10.52070 -10.41856 -10.32573 -10.21655 -10.02864 -9.96153 -9.60168 -8.85372 -8.59293 -6.90139 -5.73538 -3.02609 0.13633 1.23216 1.46782 2.52990 2.68032 2.94146 3.24916 3.42556 3.46341 3.50704 3.51962 3.83515 3.94039 4.10474 4.47349 4.60266 4.69554 4.79824 4.80725 5.03371 5.25550 5.38911 5.44872 5.60803 5.67304 5.76599 5.89566 6.04701 6.06391 6.11460 6.16943 6.23958 6.36796 6.46314 6.65341 6.67686 6.75259 6.84241 7.40401 7.71776 7.92756 8.44937 9.56187 10.13102 10.47497 11.49047 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.002733 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.692000 B =10242.782932 C =11409.318200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.124 4.124 14 C 0.112 3.888 15 N -0.591 5.591 16 C 0.593 3.407 17 O -0.509 6.509 18 C 0.030 3.970 19 N -0.460 5.460 20 C 0.217 3.783 21 O -0.172 6.172 22 C -0.088 4.088 23 C 0.564 3.436 24 F -0.159 7.159 25 F -0.169 7.169 26 F -0.122 7.122 27 C 0.121 3.879 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.269 0.731 40 H 0.088 0.912 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -24.874 -10.298 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.010 4.010 15 N -0.323 5.323 16 C 0.378 3.622 17 O -0.384 6.384 18 C -0.092 4.092 19 N -0.188 5.188 20 C -0.010 4.010 21 O -0.057 6.057 22 C -0.146 4.146 23 C 0.508 3.492 24 F -0.140 7.140 25 F -0.151 7.151 26 F -0.103 7.103 27 C 0.000 4.000 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.284 0.716 40 H 0.106 0.894 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.487 -24.279 -10.064 26.399 hybrid contribution 0.005 0.180 0.777 0.797 sum 2.492 -24.099 -9.287 25.947 Atomic orbital electron populations 1.21683 0.93243 1.00735 1.03101 1.21973 0.96591 0.96008 0.93316 1.20570 0.95638 0.87592 0.91982 1.42399 1.55934 1.10829 1.28423 1.19159 1.22524 0.87906 1.07707 0.91263 1.24734 0.99922 0.98301 0.97871 1.69648 1.35315 1.36358 1.16680 0.86275 0.77809 0.84982 0.77125 1.21343 1.21727 1.21297 1.22781 1.02260 0.93036 0.98200 1.22098 1.02421 0.97610 0.78916 1.48271 1.69948 1.06492 1.07635 1.16299 0.78934 0.81399 0.85607 1.90987 1.50180 1.84565 1.12683 1.21859 1.03382 0.95138 0.88850 1.71115 1.17542 1.13147 1.17026 1.28573 0.96112 0.88994 0.87364 1.84379 1.68554 1.36212 1.16599 1.23170 1.12398 0.87442 0.91572 1.16486 0.75353 0.75068 0.82261 1.93292 1.34771 1.96122 1.89811 1.93255 1.84045 1.45080 1.92688 1.93476 1.77611 1.55066 1.84107 1.22483 1.02144 0.76866 0.98536 0.93691 0.90929 0.92462 0.96046 0.95719 0.78021 0.93427 0.90348 0.89840 0.90833 0.91017 0.71559 0.89374 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.40 37.16 0.31 -1.73 16 2 C -0.08 -1.20 0.63 -152.36 -0.10 -1.30 16 3 C 0.17 3.25 5.25 -4.05 -0.02 3.23 16 4 N -0.73 -18.00 5.18 -59.91 -0.31 -18.31 16 5 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C -0.12 -1.44 5.92 -24.89 -0.15 -1.59 16 14 C 0.11 1.29 5.21 -3.06 -0.02 1.27 16 15 N -0.59 -8.65 3.31 -171.78 -0.57 -9.22 16 16 C 0.59 9.23 7.79 -12.52 -0.10 9.14 16 17 O -0.51 -9.42 13.40 5.27 0.07 -9.35 16 18 C 0.03 0.38 6.79 -83.02 -0.56 -0.19 16 19 N -0.46 -4.35 8.84 -11.48 -0.10 -4.45 16 20 C 0.22 1.23 13.19 51.96 0.69 1.92 16 21 O -0.17 -1.43 10.72 6.49 0.07 -1.36 16 22 C -0.09 -1.01 6.75 -35.08 -0.24 -1.24 16 23 C 0.56 6.91 3.34 36.01 0.12 7.03 16 24 F -0.16 -2.02 17.30 2.25 0.04 -1.98 16 25 F -0.17 -1.86 17.30 2.25 0.04 -1.82 16 26 F -0.12 -1.79 13.48 2.25 0.03 -1.76 16 27 C 0.12 2.01 5.61 -2.53 -0.01 1.99 16 28 H 0.04 0.65 7.91 -51.93 -0.41 0.24 16 29 H 0.07 1.36 6.65 -51.93 -0.35 1.01 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.38 10.03 6.22 -40.82 -0.25 9.77 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.07 0.80 7.63 -51.93 -0.40 0.41 16 38 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 39 H 0.27 -0.14 8.06 -52.49 -0.42 -0.57 16 40 H 0.09 1.70 7.95 -51.93 -0.41 1.28 16 41 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -33.67 354.58 -4.71 -38.39 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.70 Total: 3.35 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -0.32 Total: 11.25 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.26 Total: -59.49 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.14 Total: -10.71 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.11 Total: -5.56 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.67 -4.71 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484102586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.831 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds