Wall clock time and date at job start Wed Apr 1 2020 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46508 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99803 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.38806 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99662 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00143 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46998 * 60.00298 * 9 7 5 11 11 H 1.48500 * 109.46927 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47080 * 300.00090 * 9 7 5 13 13 N 1.46500 * 109.47103 * 119.99842 * 2 1 3 14 14 C 1.34770 * 120.00345 * 294.98543 * 13 2 1 15 15 O 1.21583 * 120.00059 * 5.18735 * 14 13 2 16 16 C 1.47511 * 120.00119 * 185.18095 * 14 13 2 17 17 C 1.36830 * 126.94565 * 180.02562 * 16 14 13 18 18 C 1.41260 * 103.84729 * 179.97438 * 17 16 14 19 19 C 1.50703 * 126.70569 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.46840 * 89.99970 * 19 18 17 21 21 F 1.39896 * 109.47322 * 210.00545 * 19 18 17 22 22 F 1.39904 * 109.46993 * 330.00470 * 19 18 17 23 23 N 1.30126 * 106.58987 * 359.97438 * 18 17 16 24 24 O 1.20888 * 111.98669 * 359.71817 * 23 18 17 25 25 C 1.53004 * 109.47470 * 240.00388 * 2 1 3 26 26 C 1.53000 * 117.49523 * 294.04286 * 25 2 1 27 27 C 1.52993 * 59.99963 * 252.50868 * 26 25 2 28 28 H 1.08997 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47262 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47026 * 59.99890 * 1 2 3 31 31 H 1.08998 * 109.47335 * 299.99920 * 3 2 1 32 32 H 1.09005 * 109.46997 * 60.00744 * 3 2 1 33 33 H 0.97000 * 120.00068 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99543 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99503 * 114.99049 * 13 2 1 36 36 H 1.07996 * 128.07118 * 359.97438 * 17 16 14 37 37 H 1.09000 * 115.56066 * 79.72717 * 25 2 1 38 38 H 1.08997 * 117.50140 * 145.01768 * 26 25 2 39 39 H 1.09001 * 117.49899 * 359.97438 * 26 25 2 40 40 H 1.09006 * 117.50011 * 107.49067 * 27 26 25 41 41 H 1.08994 * 117.50222 * 252.51281 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6496 3.5637 -0.0002 7 6 5.5777 2.6285 0.0002 8 7 6.2358 1.4886 0.0002 9 14 6.5117 4.2463 0.0004 10 1 6.1530 5.0248 1.2130 11 1 7.9717 3.9749 -0.0002 12 1 6.1530 5.0251 -1.2121 13 7 2.0183 -0.6906 1.1962 14 6 1.7781 -0.1742 2.4177 15 8 1.0769 0.8122 2.5336 16 6 2.3659 -0.8060 3.6141 17 6 2.2166 -0.4043 4.9135 18 6 2.9756 -1.3432 5.6469 19 6 3.1633 -1.3790 7.1418 20 9 2.1569 -2.1604 7.7196 21 9 4.4130 -1.9315 7.4418 22 9 3.0941 -0.0780 7.6517 23 7 3.4800 -2.1719 4.7797 24 8 3.1521 -1.8986 3.6487 25 6 2.0400 -0.7212 -1.2493 26 6 1.7542 -2.2197 -1.3661 27 6 3.1736 -1.7326 -1.0678 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.9900 0.6025 0.0006 34 1 7.2059 1.4887 0.0006 35 1 2.5146 -1.5195 1.1090 36 1 1.6506 0.4347 5.2904 37 1 2.0315 -0.1341 -2.1677 38 1 1.5577 -2.6186 -2.3612 39 1 1.2032 -2.6918 -0.5527 40 1 3.5560 -1.8842 -0.0584 41 1 3.9108 -1.8109 -1.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568023220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:24 Heat of formation + Delta-G solvation = -67.443318 kcal Electronic energy + Delta-G solvation = -31533.153793 eV Core-core repulsion = 26617.859522 eV Total energy + Delta-G solvation = -4915.294271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.52254 -48.04447 -48.01444 -45.56467 -40.40765 -37.90383 -35.01909 -34.58224 -33.57109 -32.67468 -31.25095 -29.96563 -27.54866 -25.83356 -24.70433 -23.46010 -23.14156 -22.25726 -22.04053 -21.24331 -19.48239 -19.07770 -19.03721 -18.68916 -18.05175 -17.39396 -17.12309 -16.55149 -15.68857 -15.03261 -14.89219 -14.87479 -14.79135 -14.68435 -14.51524 -14.42508 -14.16939 -14.14165 -13.96871 -13.58202 -13.50080 -12.89065 -12.71223 -12.50259 -12.30569 -12.22401 -11.91293 -11.58586 -11.32234 -11.23997 -11.02395 -10.81945 -10.78881 -10.21502 -10.11115 -10.08301 -9.99223 -9.88595 -9.66148 -8.88512 -8.80743 -6.87448 -5.75203 -3.02035 0.49120 1.24244 1.90248 2.30751 2.93160 3.04737 3.09132 3.44919 3.48432 3.49701 3.50524 3.94174 3.97671 4.24028 4.36520 4.59878 4.63637 4.73079 4.82247 5.02128 5.04534 5.24624 5.36841 5.52124 5.59623 5.65129 5.73919 5.83577 6.05462 6.11100 6.21769 6.27826 6.29423 6.44042 6.44903 6.71550 6.92819 7.29556 7.56649 7.72422 8.06717 8.44250 9.56240 10.13330 10.49906 11.47542 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.003883 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.274198 B = 7209.274463 C = 8998.800055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.198 3.802 3 C 0.139 3.861 4 N -0.727 5.727 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 N -0.696 5.696 14 C 0.612 3.388 15 O -0.495 6.495 16 C -0.054 4.054 17 C -0.118 4.118 18 C -0.089 4.089 19 C 0.562 3.438 20 F -0.165 7.165 21 F -0.163 7.163 22 F -0.159 7.159 23 N -0.291 5.291 24 O 0.154 5.846 25 C -0.138 4.138 26 C -0.188 4.188 27 C -0.168 4.168 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.403 0.597 36 H 0.198 0.802 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -10.520 7.066 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.113 3.887 3 C 0.011 3.989 4 N -0.371 5.371 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.350 5.350 14 C 0.394 3.606 15 O -0.370 6.370 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.247 4.247 19 C 0.507 3.493 20 F -0.146 7.146 21 F -0.144 7.144 22 F -0.140 7.140 23 N 0.018 4.982 24 O 0.069 5.931 25 C -0.157 4.157 26 C -0.225 4.225 27 C -0.206 4.206 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.242 0.758 36 H 0.215 0.785 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.043 -10.698 7.351 17.042 hybrid contribution 0.872 0.893 0.330 1.291 sum -10.170 -9.805 7.680 16.080 Atomic orbital electron populations 1.22111 0.93658 1.02036 1.03565 1.20254 0.93617 0.93434 0.81383 1.21149 0.86864 0.91062 0.99814 1.42244 0.98977 1.06423 1.89485 1.19174 0.89001 0.86167 1.42244 0.91377 1.24674 0.96316 0.96642 1.03256 1.69637 1.06750 1.23828 1.58079 0.86309 0.78978 0.83331 0.77841 1.21383 1.21775 1.21322 1.46119 1.56609 1.27303 1.04983 1.16242 0.80501 0.83084 0.80755 1.90837 1.37254 1.24145 1.84719 1.24626 0.98560 0.90965 0.97791 1.22632 1.00541 1.00808 0.90091 1.23375 1.05898 0.99570 0.95840 1.16569 0.74593 0.74411 0.83775 1.93263 1.60719 1.74861 1.85758 1.93268 1.41625 1.85463 1.94015 1.93269 1.96002 1.36700 1.88054 1.73793 1.14750 1.19786 0.89834 1.85029 1.48562 1.36804 1.22740 1.22394 1.03296 0.91018 0.98975 1.23049 0.99673 0.96995 1.02790 1.22931 0.91562 1.02899 1.03175 0.92594 0.90593 0.91333 0.95403 0.93318 0.78079 0.93618 0.75843 0.78525 0.86212 0.88779 0.89090 0.88768 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.37 37.15 0.31 -1.64 16 2 C 0.20 2.95 0.52 -131.82 -0.07 2.88 16 3 C 0.14 2.74 4.89 -4.03 -0.02 2.72 16 4 N -0.73 -17.53 5.22 -59.90 -0.31 -17.85 16 5 C -0.23 -6.48 9.99 -15.06 -0.15 -6.63 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 9 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 N -0.70 -9.98 4.49 -48.65 -0.22 -10.19 16 14 C 0.61 9.50 7.23 -12.48 -0.09 9.41 16 15 O -0.49 -8.71 13.15 5.29 0.07 -8.64 16 16 C -0.05 -0.75 7.29 -36.31 -0.26 -1.02 16 17 C -0.12 -1.50 10.65 -38.94 -0.41 -1.92 16 18 C -0.09 -1.16 6.63 -82.17 -0.54 -1.70 16 19 C 0.56 6.58 3.56 36.01 0.13 6.71 16 20 F -0.16 -1.82 17.30 2.25 0.04 -1.78 16 21 F -0.16 -2.04 17.27 2.25 0.04 -2.00 16 22 F -0.16 -1.81 17.08 2.25 0.04 -1.77 16 23 N -0.29 -4.09 12.00 33.52 0.40 -3.68 16 24 O 0.15 2.10 11.05 15.54 0.17 2.27 16 25 C -0.14 -1.89 4.48 -90.62 -0.41 -2.29 16 26 C -0.19 -2.01 9.53 -26.73 -0.25 -2.27 16 27 C -0.17 -2.25 8.98 -26.74 -0.24 -2.49 16 28 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 29 H 0.08 1.06 6.36 -51.93 -0.33 0.73 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 1.05 5.99 -51.93 -0.31 0.74 16 33 H 0.38 9.48 6.43 -40.82 -0.26 9.22 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.40 5.11 5.47 -40.82 -0.22 4.89 16 36 H 0.20 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.88 7.99 -51.93 -0.41 0.46 16 40 H 0.09 1.28 5.95 -51.93 -0.31 0.97 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -30.84 359.92 -5.09 -35.93 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.33 Total: 10.38 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.11 Total: 1.29 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.60 Total: -58.56 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.24 Total: -6.36 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.12 Total: -5.55 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.84 -5.09 -35.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568023220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.509 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds