Wall clock time and date at job start Wed Apr 1 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46508 * 109.46848 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99803 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99802 * 0.02562 * 5 4 3 7 7 C 1.38806 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99662 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00143 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46998 * 60.00298 * 9 7 5 11 11 H 1.48500 * 109.46927 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47080 * 300.00090 * 9 7 5 13 13 N 1.46500 * 109.47103 * 119.99842 * 2 1 3 14 14 C 1.34770 * 120.00345 * 294.98543 * 13 2 1 15 15 O 1.21583 * 120.00059 * 5.18735 * 14 13 2 16 16 C 1.47511 * 120.00119 * 185.18095 * 14 13 2 17 17 C 1.36830 * 126.94565 * 180.02562 * 16 14 13 18 18 C 1.41260 * 103.84729 * 179.97438 * 17 16 14 19 19 C 1.50703 * 126.70569 * 180.02562 * 18 17 16 20 20 F 1.39901 * 109.46840 * 89.99970 * 19 18 17 21 21 F 1.39896 * 109.47322 * 210.00545 * 19 18 17 22 22 F 1.39904 * 109.46993 * 330.00470 * 19 18 17 23 23 N 1.30126 * 106.58987 * 359.97438 * 18 17 16 24 24 O 1.20888 * 111.98669 * 359.71817 * 23 18 17 25 25 C 1.53004 * 109.47470 * 240.00388 * 2 1 3 26 26 C 1.53000 * 117.49523 * 294.04286 * 25 2 1 27 27 C 1.52993 * 59.99963 * 252.50868 * 26 25 2 28 28 H 1.08997 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47262 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47026 * 59.99890 * 1 2 3 31 31 H 1.08998 * 109.47335 * 299.99920 * 3 2 1 32 32 H 1.09005 * 109.46997 * 60.00744 * 3 2 1 33 33 H 0.97000 * 120.00068 * 0.02562 * 4 3 2 34 34 H 0.97003 * 119.99543 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99503 * 114.99049 * 13 2 1 36 36 H 1.07996 * 128.07118 * 359.97438 * 17 16 14 37 37 H 1.09000 * 115.56066 * 79.72717 * 25 2 1 38 38 H 1.08997 * 117.50140 * 145.01768 * 26 25 2 39 39 H 1.09001 * 117.49899 * 359.97438 * 26 25 2 40 40 H 1.09006 * 117.50011 * 107.49067 * 27 26 25 41 41 H 1.08994 * 117.50222 * 252.51281 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1897 2.6284 0.0002 6 1 3.6496 3.5637 -0.0002 7 6 5.5777 2.6285 0.0002 8 7 6.2358 1.4886 0.0002 9 14 6.5117 4.2463 0.0004 10 1 6.1530 5.0248 1.2130 11 1 7.9717 3.9749 -0.0002 12 1 6.1530 5.0251 -1.2121 13 7 2.0183 -0.6906 1.1962 14 6 1.7781 -0.1742 2.4177 15 8 1.0769 0.8122 2.5336 16 6 2.3659 -0.8060 3.6141 17 6 2.2166 -0.4043 4.9135 18 6 2.9756 -1.3432 5.6469 19 6 3.1633 -1.3790 7.1418 20 9 2.1569 -2.1604 7.7196 21 9 4.4130 -1.9315 7.4418 22 9 3.0941 -0.0780 7.6517 23 7 3.4800 -2.1719 4.7797 24 8 3.1521 -1.8986 3.6487 25 6 2.0400 -0.7212 -1.2493 26 6 1.7542 -2.2197 -1.3661 27 6 3.1736 -1.7326 -1.0678 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.9900 0.6025 0.0006 34 1 7.2059 1.4887 0.0006 35 1 2.5146 -1.5195 1.1090 36 1 1.6506 0.4347 5.2904 37 1 2.0315 -0.1341 -2.1677 38 1 1.5577 -2.6186 -2.3612 39 1 1.2032 -2.6918 -0.5527 40 1 3.5560 -1.8842 -0.0584 41 1 3.9108 -1.8109 -1.8667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568023220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:23 Heat of formation + Delta-G solvation = -86.638900 kcal Electronic energy + Delta-G solvation = -31533.986176 eV Core-core repulsion = 26617.859522 eV Total energy + Delta-G solvation = -4916.126654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.46756 -48.98252 -48.96023 -46.63822 -41.62312 -39.08161 -36.26697 -36.04950 -34.93673 -33.93517 -32.83545 -31.46545 -28.54392 -27.46238 -25.91928 -24.72412 -24.41506 -23.75296 -23.10805 -22.29498 -20.56544 -20.34780 -20.00610 -19.65386 -19.14243 -19.09698 -18.41080 -17.64325 -17.11059 -16.37828 -16.15118 -16.01753 -15.92367 -15.80819 -15.72880 -15.36512 -15.26631 -15.15636 -15.09508 -15.08169 -14.97368 -14.05403 -13.97084 -13.84789 -13.74734 -13.34295 -13.22329 -12.94621 -12.75459 -12.55281 -12.30259 -12.28990 -12.23257 -12.07153 -11.77241 -11.34348 -11.19485 -11.11323 -10.99968 -10.79891 -10.09502 -8.90267 -7.91860 -5.17151 -0.61425 0.19682 0.90357 1.19617 1.46430 1.48034 1.53955 1.77153 1.96253 2.06719 2.45683 2.57304 2.96723 2.99883 3.21294 3.32834 3.41046 3.55288 3.66829 3.72911 3.82272 4.00042 4.13009 4.31596 4.39707 4.59411 4.61073 4.75172 4.87001 4.93265 4.99174 5.10015 5.20222 5.27100 5.33935 5.38346 5.50879 5.53837 6.15983 6.30777 6.44989 6.88488 7.39336 8.15553 8.44025 9.30593 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009044 B = 0.003883 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.274198 B = 7209.274463 C = 8998.800055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.205 3.795 3 C 0.137 3.863 4 N -0.732 5.732 5 C -0.241 4.241 6 H 0.066 0.934 7 C -0.068 4.068 8 N -0.962 5.962 9 Si 0.963 3.037 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.278 1.278 13 N -0.691 5.691 14 C 0.610 3.390 15 O -0.520 6.520 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.090 4.090 19 C 0.569 3.431 20 F -0.158 7.158 21 F -0.167 7.167 22 F -0.155 7.155 23 N -0.303 5.303 24 O 0.156 5.844 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.188 4.188 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.381 0.619 34 H 0.249 0.751 35 H 0.411 0.589 36 H 0.216 0.784 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -11.181 7.120 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 C 0.010 3.990 4 N -0.375 5.375 5 C -0.373 4.373 6 H 0.084 0.916 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.792 3.208 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.205 1.205 13 N -0.344 5.344 14 C 0.393 3.607 15 O -0.397 6.397 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.248 4.248 19 C 0.514 3.486 20 F -0.140 7.140 21 F -0.148 7.148 22 F -0.136 7.136 23 N 0.006 4.994 24 O 0.070 5.930 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.225 4.225 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.215 0.785 34 H 0.058 0.942 35 H 0.251 0.749 36 H 0.233 0.767 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.199 -11.371 7.397 18.244 hybrid contribution 1.183 1.108 0.327 1.653 sum -11.016 -10.263 7.724 16.922 Atomic orbital electron populations 1.22053 0.91448 1.03625 1.03417 1.20123 0.95068 0.90646 0.82159 1.21243 0.84384 0.94678 0.98716 1.42342 1.00797 1.05256 1.89149 1.19511 0.89533 0.87335 1.40902 0.91574 1.25358 0.97182 0.99464 1.04056 1.69773 1.06446 1.25444 1.59618 0.85375 0.77359 0.80061 0.77962 1.21136 1.22151 1.20467 1.46103 1.56321 1.27409 1.04615 1.16402 0.80194 0.82817 0.81298 1.90823 1.38439 1.25212 1.85205 1.24452 0.99409 0.91608 0.97748 1.22924 0.99801 1.00798 0.89539 1.23581 1.05522 0.99265 0.96421 1.16391 0.74511 0.74575 0.83129 1.93278 1.60410 1.74722 1.85550 1.93261 1.42026 1.85570 1.93977 1.93280 1.95975 1.36461 1.87908 1.73773 1.15146 1.20333 0.90117 1.85021 1.48547 1.36704 1.22685 1.22305 1.04544 0.92676 0.97880 1.23126 0.96784 0.93903 1.04466 1.22929 0.92769 1.04186 1.02616 0.90079 0.92011 0.90223 0.95395 0.95091 0.78538 0.94207 0.74879 0.76683 0.87160 0.86799 0.87248 0.89365 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.37 71.98 0.60 -2.82 16 2 C 0.21 5.92 0.52 3.60 0.00 5.92 16 3 C 0.14 5.42 4.89 86.38 0.42 5.84 16 4 N -0.73 -35.74 5.22 -343.43 -1.79 -37.53 16 5 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.96 -57.46 13.06 21.65 0.28 -57.17 16 9 Si 0.96 46.44 29.55 68.60 2.03 48.46 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.69 -19.28 4.49 -426.09 -1.91 -21.20 16 14 C 0.61 18.68 7.23 86.69 0.63 19.30 16 15 O -0.52 -18.25 13.15 -3.98 -0.05 -18.30 16 16 C -0.07 -1.82 7.29 24.39 0.18 -1.64 16 17 C -0.11 -2.64 10.65 22.68 0.24 -2.39 16 18 C -0.09 -2.25 6.63 43.56 0.29 -1.96 16 19 C 0.57 12.58 3.56 71.24 0.25 12.83 16 20 F -0.16 -3.25 17.30 44.97 0.78 -2.48 16 21 F -0.17 -4.01 17.27 44.97 0.78 -3.24 16 22 F -0.16 -3.29 17.08 44.97 0.77 -2.52 16 23 N -0.30 -8.26 12.00 -48.85 -0.59 -8.85 16 24 O 0.16 4.17 11.05 65.79 0.73 4.89 16 25 C -0.16 -4.05 4.48 -10.79 -0.05 -4.10 16 26 C -0.15 -2.70 9.53 30.59 0.29 -2.40 16 27 C -0.19 -4.85 8.98 30.59 0.27 -4.58 16 28 H 0.08 1.49 7.71 -2.39 -0.02 1.47 16 29 H 0.06 1.64 6.36 -2.39 -0.02 1.63 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.03 1.36 5.99 -2.38 -0.01 1.35 16 33 H 0.38 19.06 6.43 -92.71 -0.60 18.46 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.41 10.07 5.47 -92.70 -0.51 9.56 16 36 H 0.22 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.67 7.99 -2.39 -0.02 1.65 16 40 H 0.09 2.36 5.95 -2.38 -0.01 2.35 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.83 359.92 5.48 -60.35 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.02 Total: 29.54 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 4.44 Total: 8.04 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.01 Total: -124.75 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.67 Total: -13.41 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 2.32 Total: -8.24 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -65.83 5.48 -60.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568023220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.284 kcal (2) G-P(sol) polarization free energy of solvation -65.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds