Wall clock time and date at job start Wed Apr 1 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86793 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47332 * 239.99769 * 3 2 1 5 5 H 1.48501 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47061 * 120.00149 * 3 2 1 7 7 C 1.40033 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99968 * 176.34374 * 7 2 1 9 9 C 1.41537 * 119.99893 * 356.34332 * 7 2 1 10 10 C 1.41184 * 120.99636 * 213.41476 * 9 7 2 11 11 C 1.37586 * 119.01586 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.11193 * 359.97357 * 11 10 9 13 13 C 1.32469 * 122.22815 * 0.02758 * 12 11 10 14 14 N 1.39471 * 119.57847 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00042 * 5.58962 * 14 13 12 16 16 O 1.21284 * 119.99759 * 354.38536 * 15 14 13 17 17 C 1.50700 * 120.00337 * 174.39000 * 15 14 13 18 18 H 1.09000 * 109.40243 * 60.16710 * 17 15 14 19 19 C 1.53071 * 109.40432 * 179.97438 * 17 15 14 20 20 C 1.53346 * 108.42623 * 168.94053 * 19 17 15 21 21 C 1.52919 * 108.67452 * 292.46862 * 20 19 17 22 22 N 1.45761 * 110.48731 * 50.75784 * 21 20 19 23 23 C 1.46494 * 117.94807 * 160.92306 * 22 21 20 24 24 C 1.50703 * 109.47274 * 89.99496 * 23 22 21 25 25 O 1.20824 * 119.99667 * 0.02562 * 24 23 22 26 26 O 1.34221 * 119.99886 * 179.72136 * 24 23 22 27 27 C 1.33358 * 124.10125 * 341.19651 * 22 21 20 28 28 O 1.21284 * 118.24124 * 181.94462 * 27 22 21 29 29 C 1.38600 * 120.84310 * 0.27095 * 13 12 11 30 30 H 0.97001 * 120.00227 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.48881 * 0.04331 * 10 9 7 32 32 H 1.08000 * 119.44697 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00211 * 185.58031 * 14 13 12 34 34 H 1.09005 * 109.66850 * 49.21024 * 19 17 15 35 35 H 1.08998 * 109.67516 * 288.67788 * 19 17 15 36 36 H 1.08999 * 109.59729 * 172.71360 * 20 19 17 37 37 H 1.08994 * 109.59944 * 52.22769 * 20 19 17 38 38 H 1.08991 * 109.30376 * 290.43849 * 21 20 19 39 39 H 1.09006 * 109.29696 * 171.06216 * 21 20 19 40 40 H 1.08997 * 109.47176 * 329.99427 * 23 22 21 41 41 H 1.09000 * 109.46900 * 209.99822 * 23 22 21 42 42 H 0.96700 * 117.00172 * 180.27610 * 26 24 23 43 43 H 1.07997 * 120.59894 * 179.72742 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2763 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0859 -1.2137 -0.0602 9 6 1.3020 -2.4372 0.0771 10 6 1.8503 -3.5509 0.7496 11 6 1.1293 -4.7217 0.7997 12 7 -0.0595 -4.8159 0.2319 13 6 -0.6179 -3.8010 -0.4108 14 7 -1.8760 -3.9619 -0.9907 15 6 -2.5647 -5.1047 -0.8005 16 8 -2.0502 -6.0317 -0.2115 17 6 -3.9738 -5.2307 -1.3196 18 1 -3.9738 -5.1021 -2.4020 19 6 -4.5214 -6.6174 -0.9728 20 6 -6.0283 -6.6283 -1.2566 21 6 -6.7208 -5.6969 -0.2610 22 7 -6.0675 -4.3941 -0.2418 23 6 -6.8149 -3.2591 0.3053 24 6 -6.5510 -3.1500 1.7850 25 8 -5.8137 -3.9391 2.3268 26 8 -7.1301 -2.1726 2.4997 27 6 -4.8338 -4.1696 -0.6958 28 8 -4.3803 -3.0493 -0.5951 29 6 0.0349 -2.5832 -0.5194 30 1 -0.4850 0.8400 0.0004 31 1 2.8211 -3.4847 1.2181 32 1 1.5423 -5.5781 1.3121 33 1 -2.2556 -3.2512 -1.5309 34 1 -4.3451 -6.8282 0.0821 35 1 -4.0270 -7.3710 -1.5857 36 1 -6.4149 -7.6408 -1.1400 37 1 -6.2115 -6.2790 -2.2726 38 1 -6.6764 -6.1370 0.7351 39 1 -7.7644 -5.5723 -0.5502 40 1 -7.8810 -3.4110 0.1366 41 1 -6.4959 -2.3417 -0.1894 42 1 -6.9274 -2.1406 3.4446 43 1 -0.4221 -1.7597 -1.0480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:44 Heat of formation + Delta-G solvation = -112.837195 kcal Electronic energy + Delta-G solvation = -30892.752929 eV Core-core repulsion = 26517.346972 eV Total energy + Delta-G solvation = -4375.405957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33203 -40.08807 -39.10035 -37.69464 -36.77702 -36.18636 -34.32674 -34.07129 -33.56671 -30.55280 -30.27253 -28.69079 -28.42292 -25.90113 -25.24327 -23.08024 -22.12093 -21.80084 -21.33796 -19.81138 -18.83557 -18.34580 -17.57603 -17.45034 -17.11942 -16.86684 -16.32122 -15.80433 -15.66505 -15.23657 -14.97618 -14.50617 -14.28086 -14.10697 -13.97868 -13.77199 -13.52320 -13.43487 -13.09908 -12.79335 -12.63450 -12.50271 -12.25554 -11.98877 -11.64054 -11.55150 -11.52684 -11.33941 -11.15616 -11.13822 -10.83423 -10.81723 -10.23871 -10.08956 -9.90162 -9.60736 -9.37082 -9.29515 -9.14145 -7.80907 -7.69908 -6.91684 -6.59135 -4.55385 2.03963 2.12383 2.54804 2.61689 2.89840 3.05881 3.07779 3.10287 3.27120 3.52359 3.67694 3.95264 4.25756 4.43067 4.51944 4.56363 4.72740 4.80608 4.94892 5.05155 5.06015 5.15509 5.16673 5.29817 5.51751 5.59835 5.72413 5.79470 5.98059 6.05878 6.13861 6.36009 6.64808 6.76423 6.85584 7.03907 7.06700 7.24518 7.45600 7.56733 7.72503 7.85686 7.91313 8.07447 8.31528 8.50268 8.78697 8.86285 8.93358 9.73665 10.25675 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003404 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.935542 B = 8222.508817 C = 9711.808032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.141 3.859 10 C -0.277 4.277 11 C 0.112 3.888 12 N -0.549 5.549 13 C 0.333 3.667 14 N -0.640 5.640 15 C 0.515 3.485 16 O -0.476 6.476 17 C -0.122 4.122 18 H 0.128 0.872 19 C -0.106 4.106 20 C -0.133 4.133 21 C 0.110 3.890 22 N -0.589 5.589 23 C 0.120 3.880 24 C 0.458 3.542 25 O -0.499 6.499 26 O -0.519 6.519 27 C 0.531 3.469 28 O -0.523 6.523 29 C -0.226 4.226 30 H 0.280 0.720 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.411 0.589 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.334 -6.071 -3.803 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.098 0.902 9 C 0.132 3.868 10 C -0.300 4.300 11 C -0.042 4.042 12 N -0.268 5.268 13 C 0.108 3.892 14 N -0.285 5.285 15 C 0.298 3.702 16 O -0.346 6.346 17 C -0.147 4.147 18 H 0.146 0.854 19 C -0.144 4.144 20 C -0.171 4.171 21 C -0.012 4.012 22 N -0.323 5.323 23 C -0.005 4.005 24 C 0.298 3.702 25 O -0.385 6.385 26 O -0.331 6.331 27 C 0.319 3.681 28 O -0.398 6.398 29 C -0.252 4.252 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.251 0.749 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.271 0.729 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.303 -7.075 -3.557 20.864 hybrid contribution 0.643 2.048 0.568 2.221 sum -18.660 -5.027 -2.989 19.555 Atomic orbital electron populations 1.69721 1.07353 1.29077 1.36670 1.25922 0.94934 1.01266 0.92291 0.86220 0.79786 0.79936 0.79832 1.18935 1.20358 1.19028 1.19472 0.94636 0.89706 1.45556 0.90240 1.17614 0.90853 0.91901 0.86414 1.22004 1.02684 0.96331 1.09001 1.21761 0.90076 0.95986 0.96415 1.67195 1.12902 1.30555 1.16158 1.18274 0.85150 0.91164 0.94561 1.43372 1.16482 1.17956 1.50732 1.19738 0.85971 0.83467 0.81065 1.90788 1.68643 1.37253 1.37938 1.21515 0.93785 0.96246 1.03130 0.85402 1.21524 0.94102 0.94145 1.04596 1.21905 0.95690 1.00198 0.99261 1.21575 0.96487 0.82279 1.00906 1.46929 1.15271 1.09494 1.60602 1.20879 0.98667 0.93865 0.87134 1.24081 0.77018 0.77799 0.91313 1.90789 1.33913 1.41661 1.72152 1.84477 1.68737 1.52125 1.27737 1.19740 0.80964 0.89539 0.77859 1.90808 1.69793 1.23437 1.55775 1.21841 0.99485 0.95418 1.08423 0.90875 0.87916 0.85881 0.74924 0.89601 0.89564 0.89016 0.90621 0.91065 0.90217 0.86010 0.85017 0.72934 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.24 10.64 55.55 0.59 -20.65 16 2 C 0.07 1.86 5.43 -17.34 -0.09 1.77 16 3 Si 0.92 19.04 29.56 -169.99 -5.03 14.01 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.44 9.11 -37.65 -0.34 -12.78 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.14 3.89 5.58 -106.55 -0.59 3.30 16 10 C -0.28 -7.11 9.90 -38.70 -0.38 -7.49 16 11 C 0.11 2.83 11.15 -17.68 -0.20 2.64 16 12 N -0.55 -14.81 7.85 -12.52 -0.10 -14.91 16 13 C 0.33 8.74 7.41 -154.70 -1.15 7.59 16 14 N -0.64 -14.12 4.76 -11.49 -0.05 -14.17 16 15 C 0.52 10.44 7.03 -10.99 -0.08 10.36 16 16 O -0.48 -11.28 14.05 5.55 0.08 -11.20 16 17 C -0.12 -1.71 2.77 -93.15 -0.26 -1.97 16 18 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 19 C -0.11 -1.19 4.78 -26.52 -0.13 -1.31 16 20 C -0.13 -0.91 6.02 -26.59 -0.16 -1.07 16 21 C 0.11 0.83 6.39 -4.48 -0.03 0.80 16 22 N -0.59 -6.52 2.30 -176.34 -0.41 -6.93 16 23 C 0.12 1.14 5.80 -5.20 -0.03 1.11 16 24 C 0.46 5.70 8.38 36.01 0.30 6.00 16 25 O -0.50 -8.50 17.18 -18.75 -0.32 -8.82 16 26 O -0.52 -5.02 13.42 -39.23 -0.53 -5.55 16 27 C 0.53 7.83 7.01 -11.88 -0.08 7.74 16 28 O -0.52 -9.60 14.09 5.55 0.08 -9.53 16 29 C -0.23 -6.17 8.60 -38.48 -0.33 -6.50 16 30 H 0.28 6.83 8.29 -40.82 -0.34 6.49 16 31 H 0.10 2.41 8.06 -52.49 -0.42 1.98 16 32 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.41 8.27 7.57 -40.82 -0.31 7.96 16 34 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.34 7.92 -51.93 -0.41 -0.08 16 40 H 0.12 0.59 7.86 -51.93 -0.41 0.18 16 41 H 0.13 1.32 7.20 -51.93 -0.37 0.95 16 42 H 0.41 2.61 9.10 45.56 0.41 3.03 16 43 H 0.14 3.76 6.20 -52.49 -0.33 3.44 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -38.99 367.07 -8.02 -47.01 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -4.32 Total: 15.01 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -3.55 Total: 10.18 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.03 Total: -56.66 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.69 Total: -35.09 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.99 -8.02 -47.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.825 kcal (2) G-P(sol) polarization free energy of solvation -38.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds