Wall clock time and date at job start Wed Apr 1 2020 04:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48497 * 109.47386 * 274.96533 * 3 2 1 5 5 H 1.48502 * 109.46597 * 34.96789 * 3 2 1 6 6 H 1.48501 * 109.47005 * 154.96586 * 3 2 1 7 7 C 1.40036 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00145 * 197.78976 * 7 2 1 9 9 C 1.41541 * 119.99736 * 17.78497 * 7 2 1 10 10 C 1.41177 * 120.99746 * 198.72014 * 9 7 2 11 11 C 1.37588 * 119.01824 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11002 * 359.97438 * 11 10 9 13 13 C 1.32477 * 122.23070 * 0.02562 * 12 11 10 14 14 N 1.39465 * 119.57757 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00364 * 4.94966 * 14 13 12 16 16 O 1.21277 * 119.99842 * 354.64830 * 15 14 13 17 17 C 1.50701 * 119.99913 * 174.64604 * 15 14 13 18 18 H 1.08997 * 109.33107 * 300.21259 * 17 15 14 19 19 C 1.52889 * 109.50143 * 180.61157 * 17 15 14 20 20 C 1.53344 * 108.58546 * 191.23084 * 19 17 15 21 21 C 1.52920 * 108.67455 * 67.34582 * 20 19 17 22 22 N 1.45751 * 110.48769 * 309.24704 * 21 20 19 23 23 C 1.46499 * 117.94919 * 199.07502 * 22 21 20 24 24 C 1.50699 * 109.46846 * 270.02208 * 23 22 21 25 25 O 1.20820 * 120.00395 * 359.97438 * 24 23 22 26 26 O 1.34232 * 119.99706 * 179.97438 * 24 23 22 27 27 C 1.33355 * 124.10879 * 19.09556 * 22 21 20 28 28 O 1.21281 * 118.25146 * 177.75234 * 27 22 21 29 29 C 1.38595 * 120.83857 * 0.27913 * 13 12 11 30 30 H 0.97002 * 120.00506 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.48792 * 0.04901 * 10 9 7 32 32 H 1.07998 * 119.44459 * 179.97438 * 11 10 9 33 33 H 0.97005 * 120.00152 * 184.95014 * 14 13 12 34 34 H 1.09000 * 109.74864 * 71.35674 * 19 17 15 35 35 H 1.08996 * 109.47012 * 310.94153 * 19 17 15 36 36 H 1.09005 * 109.60515 * 307.58817 * 20 19 17 37 37 H 1.09002 * 109.60236 * 187.10276 * 20 19 17 38 38 H 1.08995 * 109.29963 * 188.93520 * 21 20 19 39 39 H 1.08997 * 109.13400 * 69.45099 * 21 20 19 40 40 H 1.08996 * 109.46825 * 30.02002 * 23 22 21 41 41 H 1.08997 * 109.47584 * 150.02378 * 23 22 21 42 42 H 0.96701 * 116.99842 * 180.02562 * 26 24 23 43 43 H 1.08002 * 120.59622 * 179.73278 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3840 2.1070 -1.3948 5 1 1.4952 2.6200 0.8024 6 1 3.5875 1.4120 0.5925 7 6 2.0075 -1.2127 -0.0005 8 1 3.0487 -1.2353 0.2852 9 6 1.3505 -2.4090 -0.3755 10 6 1.8791 -3.6699 -0.0235 11 6 1.2071 -4.8067 -0.4096 12 7 0.0829 -4.7339 -1.0991 13 6 -0.4545 -3.5763 -1.4542 14 7 -1.6442 -3.5639 -2.1818 15 6 -2.2923 -4.7186 -2.4335 16 8 -1.7933 -5.7764 -2.1127 17 6 -3.6369 -4.6951 -3.1136 18 1 -4.3379 -4.1212 -2.5075 19 6 -4.1570 -6.1248 -3.2656 20 6 -5.3738 -6.1056 -4.1986 21 6 -4.9066 -5.7274 -5.6047 22 7 -4.0933 -4.5186 -5.5641 23 6 -3.9137 -3.7697 -6.8104 24 6 -2.6948 -4.2823 -7.5332 25 8 -2.0427 -5.1807 -7.0562 26 8 -2.3335 -3.7409 -8.7072 27 6 -3.5019 -4.0517 -4.4638 28 8 -2.8143 -3.0573 -4.5595 29 6 0.1533 -2.3774 -1.1162 30 1 -0.4851 0.8400 0.0004 31 1 2.7972 -3.7410 0.5408 32 1 1.6055 -5.7749 -0.1444 33 1 -2.0054 -2.7243 -2.5067 34 1 -4.4481 -6.5163 -2.2909 35 1 -3.3756 -6.7520 -3.6944 36 1 -6.0958 -5.3705 -3.8430 37 1 -5.8342 -7.0934 -4.2195 38 1 -5.7761 -5.5554 -6.2391 39 1 -4.3160 -6.5454 -6.0171 40 1 -4.7923 -3.8997 -7.4422 41 1 -3.7830 -2.7117 -6.5830 42 1 -1.5448 -4.1031 -9.1335 43 1 -0.2860 -1.4360 -1.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:47 Heat of formation + Delta-G solvation = -114.521976 kcal Electronic energy + Delta-G solvation = -30734.468314 eV Core-core repulsion = 26358.989299 eV Total energy + Delta-G solvation = -4375.479015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38831 -40.14201 -39.09618 -37.67839 -36.83787 -36.25407 -34.38416 -34.11433 -33.60723 -30.58572 -30.29522 -28.74231 -28.39719 -25.95713 -25.25900 -23.12815 -22.13719 -21.81290 -21.34403 -19.82333 -18.86360 -18.41400 -17.63400 -17.41945 -17.18773 -16.92570 -16.39749 -15.86236 -15.67149 -15.26458 -15.00441 -14.53646 -14.33331 -14.12107 -14.00328 -13.74303 -13.61891 -13.38092 -13.16388 -12.83301 -12.68571 -12.56186 -12.23999 -11.97649 -11.70644 -11.58401 -11.55476 -11.38938 -11.15731 -11.15087 -10.90031 -10.84001 -10.23275 -10.06638 -9.95412 -9.64806 -9.38080 -9.27060 -9.20173 -7.96191 -7.66024 -6.93030 -6.73648 -4.55752 1.97973 2.06292 2.49361 2.61985 2.83332 3.01542 3.04557 3.08427 3.27700 3.51901 3.69467 3.87848 4.22416 4.40724 4.51552 4.55450 4.68183 4.73278 4.90315 5.00989 5.03427 5.14226 5.15127 5.29380 5.50390 5.59647 5.77582 5.79613 5.94307 6.08239 6.13356 6.28531 6.67113 6.77983 6.88241 6.98031 7.02228 7.21263 7.48922 7.55192 7.65202 7.81116 7.86943 8.03628 8.31112 8.49803 8.76468 8.81001 8.95810 9.79126 10.08894 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003106 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.627315 B = 9013.767544 C =10021.307992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.082 0.918 9 C 0.140 3.860 10 C -0.289 4.289 11 C 0.119 3.881 12 N -0.558 5.558 13 C 0.337 3.663 14 N -0.642 5.642 15 C 0.516 3.484 16 O -0.475 6.475 17 C -0.123 4.123 18 H 0.130 0.870 19 C -0.106 4.106 20 C -0.133 4.133 21 C 0.110 3.890 22 N -0.588 5.588 23 C 0.119 3.881 24 C 0.459 3.541 25 O -0.499 6.499 26 O -0.519 6.519 27 C 0.535 3.465 28 O -0.531 6.531 29 C -0.246 4.246 30 H 0.282 0.718 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.415 0.585 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.411 0.589 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.382 -4.971 -14.024 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.132 3.868 10 C -0.313 4.313 11 C -0.035 4.035 12 N -0.277 5.277 13 C 0.113 3.887 14 N -0.289 5.289 15 C 0.298 3.702 16 O -0.346 6.346 17 C -0.147 4.147 18 H 0.147 0.853 19 C -0.144 4.144 20 C -0.171 4.171 21 C -0.013 4.013 22 N -0.322 5.322 23 C -0.006 4.006 24 C 0.298 3.702 25 O -0.385 6.385 26 O -0.331 6.331 27 C 0.323 3.677 28 O -0.407 6.407 29 C -0.272 4.272 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.253 0.747 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.271 0.729 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.526 -5.976 -13.728 21.569 hybrid contribution 1.130 1.742 -0.246 2.090 sum -14.397 -4.234 -13.973 20.505 Atomic orbital electron populations 1.69772 1.07756 1.29317 1.34012 1.25990 0.94753 1.01599 0.91872 0.86232 0.80611 0.80271 0.79247 1.19220 1.20162 1.18426 1.19619 0.98222 0.90859 1.39535 0.89963 1.17569 0.90151 0.92226 0.86896 1.21834 1.04353 0.93665 1.11425 1.21729 0.90739 0.96797 0.94284 1.67209 1.14070 1.26322 1.20111 1.18227 0.86551 0.90865 0.93088 1.43466 1.22529 1.10095 1.52771 1.19717 0.85317 0.84858 0.80329 1.90786 1.65504 1.29433 1.48833 1.21509 0.99133 1.00173 0.93910 0.85253 1.21492 0.97622 0.93850 1.01474 1.21911 0.98251 1.03330 0.93597 1.21594 0.94361 0.86366 0.98941 1.46936 1.51059 1.27164 1.07006 1.20893 0.94357 0.99657 0.85709 1.24092 0.86828 0.80232 0.79045 1.90789 1.53074 1.28973 1.65707 1.84487 1.49486 1.63446 1.35653 1.19760 0.78376 0.84082 0.85487 1.90746 1.37829 1.26277 1.85813 1.21716 1.01493 0.96014 1.07954 0.90717 0.88105 0.86001 0.74696 0.89493 0.89610 0.90587 0.88960 0.90121 0.91008 0.85921 0.85025 0.72936 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.91 10.67 55.55 0.59 -19.32 16 2 C 0.08 1.93 5.22 -17.35 -0.09 1.83 16 3 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -12.06 9.13 -37.65 -0.34 -12.40 16 8 H 0.08 2.10 7.91 -52.49 -0.42 1.68 16 9 C 0.14 3.87 5.65 -106.55 -0.60 3.26 16 10 C -0.29 -7.45 9.90 -38.70 -0.38 -7.83 16 11 C 0.12 3.02 11.15 -17.68 -0.20 2.82 16 12 N -0.56 -15.16 7.85 -12.52 -0.10 -15.25 16 13 C 0.34 8.90 7.42 -154.70 -1.15 7.75 16 14 N -0.64 -14.38 4.98 -11.49 -0.06 -14.44 16 15 C 0.52 10.58 7.01 -10.98 -0.08 10.50 16 16 O -0.48 -11.37 14.05 5.56 0.08 -11.30 16 17 C -0.12 -1.73 2.78 -93.23 -0.26 -1.99 16 18 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 19 C -0.11 -1.20 4.79 -26.61 -0.13 -1.33 16 20 C -0.13 -0.90 6.02 -26.59 -0.16 -1.06 16 21 C 0.11 0.79 6.39 -4.49 -0.03 0.77 16 22 N -0.59 -6.23 2.30 -176.35 -0.41 -6.63 16 23 C 0.12 1.05 5.79 -5.19 -0.03 1.01 16 24 C 0.46 5.26 8.38 36.01 0.30 5.57 16 25 O -0.50 -8.00 17.18 -18.75 -0.32 -8.33 16 26 O -0.52 -4.50 13.42 -39.26 -0.53 -5.02 16 27 C 0.53 7.67 7.01 -11.87 -0.08 7.58 16 28 O -0.53 -9.32 13.89 5.56 0.08 -9.24 16 29 C -0.25 -6.72 8.67 -38.48 -0.33 -7.05 16 30 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 31 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 33 H 0.42 8.56 7.13 -40.82 -0.29 8.27 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.18 7.70 -51.93 -0.40 0.78 16 36 H 0.08 0.43 8.13 -51.93 -0.42 0.00 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.12 0.52 7.86 -51.93 -0.41 0.11 16 41 H 0.13 1.21 7.20 -51.93 -0.37 0.83 16 42 H 0.41 2.17 9.10 45.56 0.41 2.58 16 43 H 0.14 3.68 5.88 -52.49 -0.31 3.37 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -38.31 366.40 -8.02 -46.33 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -4.29 Total: 14.80 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -3.56 Total: 9.43 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.03 Total: -55.65 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.69 Total: -33.89 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.31 -8.02 -46.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.193 kcal (2) G-P(sol) polarization free energy of solvation -38.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds