Wall clock time and date at job start Wed Apr 1 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48501 * 109.47244 * 85.02294 * 3 2 1 5 5 H 1.48508 * 109.47462 * 205.01742 * 3 2 1 6 6 H 1.48501 * 109.47197 * 325.01961 * 3 2 1 7 7 C 1.40033 * 119.99744 * 179.72410 * 2 1 3 8 8 H 1.08008 * 119.99616 * 194.79806 * 7 2 1 9 9 C 1.41536 * 120.00353 * 14.80202 * 7 2 1 10 10 C 1.41164 * 120.99639 * 25.97390 * 9 7 2 11 11 C 1.36592 * 119.13006 * 179.97438 * 10 9 7 12 12 N 1.32068 * 121.25981 * 359.97438 * 11 10 9 13 13 C 1.32495 * 122.22466 * 0.02623 * 12 11 10 14 14 N 1.39469 * 119.64374 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00037 * 357.94971 * 14 13 12 16 16 O 1.21582 * 119.99789 * 5.00857 * 15 14 13 17 17 N 1.34770 * 119.99815 * 185.00376 * 15 14 13 18 18 C 1.48086 * 127.85027 * 359.68254 * 17 15 14 19 19 C 1.54680 * 104.56452 * 140.06437 * 18 17 15 20 20 H 1.08999 * 113.08020 * 147.54137 * 19 18 17 21 21 C 1.54394 * 108.95892 * 273.70799 * 19 18 17 22 22 O 1.44383 * 104.92113 * 87.04514 * 21 19 18 23 23 C 1.46071 * 105.40997 * 40.85998 * 22 21 19 24 24 C 1.54393 * 104.09936 * 319.24965 * 23 22 21 25 25 C 1.50697 * 112.71385 * 146.99739 * 24 23 22 26 26 O 1.20822 * 120.00268 * 242.56164 * 25 24 23 27 27 O 1.34227 * 119.99671 * 62.56523 * 25 24 23 28 28 C 1.48096 * 127.84870 * 180.02562 * 17 15 14 29 29 C 1.38640 * 120.70861 * 359.73660 * 13 12 11 30 30 H 0.97006 * 119.99893 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.43819 * 359.95395 * 10 9 7 32 32 H 1.07996 * 119.37088 * 179.97438 * 11 10 9 33 33 H 0.96998 * 119.99603 * 177.95215 * 14 13 12 34 34 H 1.09000 * 110.38223 * 258.92935 * 18 17 15 35 35 H 1.08996 * 110.38274 * 21.29022 * 18 17 15 36 36 H 1.08990 * 110.35237 * 205.90861 * 21 19 18 37 37 H 1.09001 * 110.34777 * 328.08087 * 21 19 18 38 38 H 1.08999 * 110.97821 * 200.55182 * 23 22 21 39 39 H 1.08999 * 110.52281 * 77.72924 * 23 22 21 40 40 H 0.96702 * 116.99983 * 180.02562 * 27 25 24 41 41 H 1.09010 * 110.37645 * 338.71283 * 28 17 15 42 42 H 1.09004 * 110.37983 * 100.94980 * 28 17 15 43 43 H 1.07993 * 120.66780 * 180.28722 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3837 2.1071 1.3948 5 1 3.5877 1.4121 -0.5921 6 1 1.4955 2.6200 -0.8027 7 6 2.0075 -1.2127 0.0058 8 1 3.0607 -1.2271 0.2448 9 6 1.3350 -2.4196 -0.3015 10 6 0.1805 -2.4221 -1.1137 11 6 -0.4381 -3.6090 -1.3865 12 7 0.0240 -4.7490 -0.9059 13 6 1.1028 -4.8068 -0.1388 14 7 1.5441 -6.0404 0.3392 15 6 0.8506 -7.1605 0.0547 16 8 -0.1068 -7.1093 -0.6929 17 7 1.2187 -8.3373 0.5988 18 6 2.3497 -8.5992 1.5181 19 6 1.7896 -9.6107 2.5456 20 1 2.5426 -10.3081 2.9128 21 6 1.0902 -8.8353 3.6829 22 8 -0.2629 -8.6368 3.2201 23 6 -0.6434 -9.8946 2.5822 24 6 0.6206 -10.3192 1.8040 25 6 0.7893 -11.8153 1.7397 26 8 1.7541 -12.3369 2.2465 27 8 -0.1325 -12.5685 1.1195 28 6 0.5880 -9.6636 0.4076 29 6 1.8011 -3.6548 0.1888 30 1 -0.4850 0.8401 0.0004 31 1 -0.2090 -1.4976 -1.5139 32 1 -1.3219 -3.6153 -2.0071 33 1 2.3500 -6.0922 0.8765 34 1 3.1888 -9.0326 0.9738 35 1 2.6543 -7.6792 2.0169 36 1 1.0946 -9.4229 4.6008 37 1 1.5815 -7.8760 3.8454 38 1 -1.4786 -9.7478 1.8973 39 1 -0.8953 -10.6432 3.3334 40 1 0.0187 -13.5235 1.1043 41 1 -0.4408 -9.5490 0.0659 42 1 1.1603 -10.2567 -0.3058 43 1 2.6830 -3.7031 0.8103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:56 Heat of formation + Delta-G solvation = -96.225567 kcal Electronic energy + Delta-G solvation = -30613.118617 eV Core-core repulsion = 26238.432994 eV Total energy + Delta-G solvation = -4374.685623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73715 -40.04598 -39.23126 -37.86906 -36.61874 -35.92453 -34.45109 -33.59805 -32.00276 -31.20037 -30.63900 -28.56216 -26.40159 -26.00979 -25.62394 -24.43675 -22.38458 -21.73740 -21.54850 -20.07286 -19.55139 -18.53479 -18.20886 -17.81456 -17.43382 -16.37765 -16.14492 -15.84297 -15.42568 -15.15823 -14.98871 -14.92306 -14.69662 -14.23878 -14.09777 -13.81487 -13.63848 -13.42578 -13.01759 -12.95182 -12.60261 -12.40732 -12.22977 -12.06216 -11.87183 -11.74486 -11.55633 -11.44344 -11.26078 -11.20778 -10.95537 -10.89418 -10.37229 -10.14450 -10.04079 -9.74433 -9.57513 -9.35613 -8.65056 -7.99428 -7.69155 -7.00462 -6.78869 -4.59931 1.62553 2.31828 2.73615 2.77331 2.78751 3.03009 3.07483 3.24394 3.53094 3.59915 3.75579 3.86131 4.04554 4.23725 4.31452 4.55896 4.60245 4.71103 4.73270 5.06476 5.13179 5.15985 5.30675 5.32943 5.41272 5.43331 5.47636 5.51556 5.72817 5.85893 5.97591 6.14782 6.39319 6.55328 6.61454 6.79723 6.93520 7.13206 7.24407 7.37729 7.45284 7.55059 7.89211 8.05691 8.28723 8.49624 8.75031 8.76300 9.09134 9.75491 10.09962 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002353 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.329284 B =11898.530058 C =12267.991878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.149 3.851 10 C -0.224 4.224 11 C 0.106 3.894 12 N -0.553 5.553 13 C 0.369 3.631 14 N -0.665 5.665 15 C 0.723 3.277 16 O -0.522 6.522 17 N -0.639 5.639 18 C 0.107 3.893 19 C -0.121 4.121 20 H 0.125 0.875 21 C 0.050 3.950 22 O -0.354 6.354 23 C 0.070 3.930 24 C -0.109 4.109 25 C 0.509 3.491 26 O -0.506 6.506 27 O -0.507 6.507 28 C 0.152 3.848 29 C -0.306 4.306 30 H 0.283 0.717 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.414 0.586 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -19.501 6.154 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.141 3.859 10 C -0.248 4.248 11 C -0.044 4.044 12 N -0.272 5.272 13 C 0.140 3.860 14 N -0.313 5.313 15 C 0.425 3.575 16 O -0.392 6.392 17 N -0.380 5.380 18 C -0.017 4.017 19 C -0.140 4.140 20 H 0.143 0.857 21 C -0.027 4.027 22 O -0.271 6.271 23 C -0.007 4.007 24 C -0.111 4.111 25 C 0.350 3.650 26 O -0.393 6.393 27 O -0.318 6.318 28 C 0.027 3.973 29 C -0.333 4.333 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.980 -19.496 5.478 20.347 hybrid contribution 1.539 0.578 0.673 1.777 sum 3.519 -18.917 6.151 20.201 Atomic orbital electron populations 1.69780 1.07662 1.29498 1.34196 1.25957 0.94787 1.01476 0.91976 0.86238 0.80658 0.80382 0.79107 1.19485 1.18360 1.19928 1.19542 0.97115 0.90374 1.41754 0.90114 1.17559 0.90278 0.91412 0.86658 1.21945 1.00746 0.98199 1.03881 1.21603 0.97776 0.87810 0.97217 1.67203 1.14372 1.29256 1.16404 1.17744 0.92339 0.82214 0.93727 1.42520 1.28809 1.04552 1.55416 1.15377 0.82864 0.78552 0.80724 1.91038 1.27708 1.82996 1.37436 1.47959 1.32631 1.06367 1.51091 1.22436 0.89945 0.98580 0.90710 1.23685 0.97026 0.97216 0.96092 0.85706 1.23505 0.83149 1.00870 0.95141 1.89540 1.28794 1.32743 1.76070 1.23639 0.94647 0.86889 0.95529 1.22720 0.99721 0.87804 1.00882 1.22427 0.79400 0.89347 0.73845 1.90726 1.30734 1.74182 1.43661 1.84549 1.50389 1.25442 1.71452 1.21849 1.01210 0.82552 0.91690 1.21130 1.06533 0.92100 1.13522 0.90618 0.85679 0.86026 0.76463 0.90565 0.89669 0.91753 0.88079 0.87144 0.91548 0.72656 0.88097 0.91004 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 10.94 55.55 0.61 -19.26 16 2 C 0.08 1.89 5.22 -17.35 -0.09 1.80 16 3 Si 0.91 18.02 29.58 -169.99 -5.03 12.99 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.74 9.12 -37.65 -0.34 -12.08 16 8 H 0.08 1.97 7.89 -52.48 -0.41 1.55 16 9 C 0.15 3.94 5.58 -106.55 -0.60 3.35 16 10 C -0.22 -5.89 8.73 -39.07 -0.34 -6.23 16 11 C 0.11 2.70 11.10 -18.04 -0.20 2.50 16 12 N -0.55 -14.47 7.85 -12.75 -0.10 -14.57 16 13 C 0.37 8.82 7.42 -154.67 -1.15 7.67 16 14 N -0.67 -12.75 5.36 -15.86 -0.09 -12.84 16 15 C 0.72 13.90 8.53 -86.93 -0.74 13.15 16 16 O -0.52 -12.41 14.86 5.29 0.08 -12.33 16 17 N -0.64 -8.82 3.15 -174.98 -0.55 -9.37 16 18 C 0.11 1.03 6.33 -2.29 -0.01 1.02 16 19 C -0.12 -1.05 3.76 -87.67 -0.33 -1.38 16 20 H 0.13 0.97 6.96 -51.93 -0.36 0.61 16 21 C 0.05 0.47 7.06 37.89 0.27 0.74 16 22 O -0.35 -4.54 11.54 -35.23 -0.41 -4.95 16 23 C 0.07 0.70 6.74 37.89 0.26 0.95 16 24 C -0.11 -1.01 1.02 -152.92 -0.16 -1.17 16 25 C 0.51 4.31 7.10 36.00 0.26 4.56 16 26 O -0.51 -5.34 16.39 -18.75 -0.31 -5.65 16 27 O -0.51 -3.08 13.42 -39.25 -0.53 -3.61 16 28 C 0.15 1.73 6.03 -2.48 -0.01 1.71 16 29 C -0.31 -7.41 9.74 -38.46 -0.37 -7.79 16 30 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 31 H 0.13 3.31 6.28 -52.48 -0.33 2.98 16 32 H 0.12 2.79 8.06 -52.49 -0.42 2.36 16 33 H 0.40 6.05 7.13 -40.82 -0.29 5.76 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.74 6.30 -51.93 -0.33 0.41 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.89 7.53 -51.93 -0.39 0.50 16 38 H 0.11 1.11 7.50 -51.93 -0.39 0.72 16 39 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 40 H 0.41 0.70 9.10 45.56 0.41 1.12 16 41 H 0.10 1.27 7.23 -51.92 -0.38 0.90 16 42 H 0.07 0.73 7.99 -51.93 -0.41 0.31 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -35.69 360.50 -8.58 -44.26 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.12 Total: 11.07 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.57 Total: 8.82 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.13 Total: -56.04 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.16 Total: -26.54 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.69 -8.58 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.962 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds