Wall clock time and date at job start Wed Apr 1 2020 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48501 * 109.47244 * 85.02294 * 3 2 1 5 5 H 1.48508 * 109.47462 * 205.01742 * 3 2 1 6 6 H 1.48501 * 109.47197 * 325.01961 * 3 2 1 7 7 C 1.40033 * 119.99744 * 179.72410 * 2 1 3 8 8 H 1.08008 * 119.99616 * 194.79806 * 7 2 1 9 9 C 1.41536 * 120.00353 * 14.80202 * 7 2 1 10 10 C 1.41164 * 120.99639 * 25.97390 * 9 7 2 11 11 C 1.36592 * 119.13006 * 179.97438 * 10 9 7 12 12 N 1.32068 * 121.25981 * 359.97438 * 11 10 9 13 13 C 1.32495 * 122.22466 * 0.02623 * 12 11 10 14 14 N 1.39469 * 119.64374 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00037 * 357.94971 * 14 13 12 16 16 O 1.21582 * 119.99789 * 5.00857 * 15 14 13 17 17 N 1.34770 * 119.99815 * 185.00376 * 15 14 13 18 18 C 1.48086 * 127.85027 * 359.68254 * 17 15 14 19 19 C 1.54680 * 104.56452 * 140.06437 * 18 17 15 20 20 H 1.08999 * 113.08020 * 147.54137 * 19 18 17 21 21 C 1.54394 * 108.95892 * 273.70799 * 19 18 17 22 22 O 1.44383 * 104.92113 * 87.04514 * 21 19 18 23 23 C 1.46071 * 105.40997 * 40.85998 * 22 21 19 24 24 C 1.54393 * 104.09936 * 319.24965 * 23 22 21 25 25 C 1.50697 * 112.71385 * 146.99739 * 24 23 22 26 26 O 1.20822 * 120.00268 * 242.56164 * 25 24 23 27 27 O 1.34227 * 119.99671 * 62.56523 * 25 24 23 28 28 C 1.48096 * 127.84870 * 180.02562 * 17 15 14 29 29 C 1.38640 * 120.70861 * 359.73660 * 13 12 11 30 30 H 0.97006 * 119.99893 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.43819 * 359.95395 * 10 9 7 32 32 H 1.07996 * 119.37088 * 179.97438 * 11 10 9 33 33 H 0.96998 * 119.99603 * 177.95215 * 14 13 12 34 34 H 1.09000 * 110.38223 * 258.92935 * 18 17 15 35 35 H 1.08996 * 110.38274 * 21.29022 * 18 17 15 36 36 H 1.08990 * 110.35237 * 205.90861 * 21 19 18 37 37 H 1.09001 * 110.34777 * 328.08087 * 21 19 18 38 38 H 1.08999 * 110.97821 * 200.55182 * 23 22 21 39 39 H 1.08999 * 110.52281 * 77.72924 * 23 22 21 40 40 H 0.96702 * 116.99983 * 180.02562 * 27 25 24 41 41 H 1.09010 * 110.37645 * 338.71283 * 28 17 15 42 42 H 1.09004 * 110.37983 * 100.94980 * 28 17 15 43 43 H 1.07993 * 120.66780 * 180.28722 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3837 2.1071 1.3948 5 1 3.5877 1.4121 -0.5921 6 1 1.4955 2.6200 -0.8027 7 6 2.0075 -1.2127 0.0058 8 1 3.0607 -1.2271 0.2448 9 6 1.3350 -2.4196 -0.3015 10 6 0.1805 -2.4221 -1.1137 11 6 -0.4381 -3.6090 -1.3865 12 7 0.0240 -4.7490 -0.9059 13 6 1.1028 -4.8068 -0.1388 14 7 1.5441 -6.0404 0.3392 15 6 0.8506 -7.1605 0.0547 16 8 -0.1068 -7.1093 -0.6929 17 7 1.2187 -8.3373 0.5988 18 6 2.3497 -8.5992 1.5181 19 6 1.7896 -9.6107 2.5456 20 1 2.5426 -10.3081 2.9128 21 6 1.0902 -8.8353 3.6829 22 8 -0.2629 -8.6368 3.2201 23 6 -0.6434 -9.8946 2.5822 24 6 0.6206 -10.3192 1.8040 25 6 0.7893 -11.8153 1.7397 26 8 1.7541 -12.3369 2.2465 27 8 -0.1325 -12.5685 1.1195 28 6 0.5880 -9.6636 0.4076 29 6 1.8011 -3.6548 0.1888 30 1 -0.4850 0.8401 0.0004 31 1 -0.2090 -1.4976 -1.5139 32 1 -1.3219 -3.6153 -2.0071 33 1 2.3500 -6.0922 0.8765 34 1 3.1888 -9.0326 0.9738 35 1 2.6543 -7.6792 2.0169 36 1 1.0946 -9.4229 4.6008 37 1 1.5815 -7.8760 3.8454 38 1 -1.4786 -9.7478 1.8973 39 1 -0.8953 -10.6432 3.3334 40 1 0.0187 -13.5235 1.1043 41 1 -0.4408 -9.5490 0.0659 42 1 1.1603 -10.2567 -0.3058 43 1 2.6830 -3.7031 0.8103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:55 Heat of formation + Delta-G solvation = -121.798703 kcal Electronic energy + Delta-G solvation = -30614.227551 eV Core-core repulsion = 26238.432994 eV Total energy + Delta-G solvation = -4375.794557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.56484 -41.25831 -40.38358 -39.48728 -37.23705 -37.01005 -36.21971 -35.35170 -33.02150 -32.57696 -32.03015 -30.30945 -27.92408 -27.23744 -26.73424 -25.19391 -23.70629 -23.43905 -22.89326 -21.09514 -20.74848 -19.78324 -19.27070 -19.08452 -18.34879 -17.73744 -17.18554 -16.99856 -16.72361 -16.34484 -16.26333 -16.10242 -15.99477 -15.74855 -15.62782 -14.91345 -14.76662 -14.70951 -14.27103 -14.20340 -14.07102 -13.96471 -13.33164 -13.18080 -12.89376 -12.79870 -12.77672 -12.61416 -12.51123 -12.27971 -12.05457 -12.00893 -11.87727 -11.65219 -11.49148 -11.25585 -11.16177 -10.95354 -9.95941 -9.79874 -9.60418 -8.83943 -8.63227 -6.56138 0.84451 0.93147 1.00522 1.34127 1.42404 1.55153 1.59632 1.87281 2.20404 2.24951 2.77085 2.83687 2.87674 2.88251 3.22845 3.54934 3.77480 3.81958 3.87663 4.07155 4.10106 4.33914 4.38188 4.41850 4.49138 4.57012 4.62309 4.65820 4.69059 4.75723 4.78945 4.84632 4.93717 5.04473 5.14747 5.25118 5.47586 5.50816 5.63348 5.64974 5.87863 5.95658 6.23345 6.53685 6.79458 6.83017 6.86991 6.88832 7.54770 7.90430 8.28466 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002353 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.329284 B =11898.530058 C =12267.991878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.268 1.268 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.122 3.878 10 C -0.243 4.243 11 C 0.100 3.900 12 N -0.580 5.580 13 C 0.368 3.632 14 N -0.655 5.655 15 C 0.720 3.280 16 O -0.576 6.576 17 N -0.635 5.635 18 C 0.100 3.900 19 C -0.109 4.109 20 H 0.144 0.856 21 C 0.044 3.956 22 O -0.392 6.392 23 C 0.067 3.933 24 C -0.101 4.101 25 C 0.522 3.478 26 O -0.524 6.524 27 O -0.503 6.503 28 C 0.147 3.853 29 C -0.314 4.314 30 H 0.292 0.708 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.419 0.581 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.435 0.565 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -20.462 7.421 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.178 1.178 6 H -0.192 1.192 7 C -0.512 4.512 8 H 0.107 0.893 9 C 0.113 3.887 10 C -0.267 4.267 11 C -0.051 4.051 12 N -0.300 5.300 13 C 0.138 3.862 14 N -0.304 5.304 15 C 0.422 3.578 16 O -0.450 6.450 17 N -0.374 5.374 18 C -0.022 4.022 19 C -0.128 4.128 20 H 0.161 0.839 21 C -0.032 4.032 22 O -0.311 6.311 23 C -0.010 4.010 24 C -0.104 4.104 25 C 0.363 3.637 26 O -0.413 6.413 27 O -0.317 6.317 28 C 0.023 3.977 29 C -0.340 4.340 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.258 0.742 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.298 0.702 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.925 -20.559 6.791 22.004 hybrid contribution 0.900 0.736 0.312 1.203 sum 4.825 -19.823 7.102 21.603 Atomic orbital electron populations 1.69838 1.09298 1.31072 1.33991 1.26904 0.95525 1.04895 0.90777 0.85070 0.79146 0.75323 0.79452 1.18567 1.17840 1.19201 1.19874 0.97659 0.91091 1.42599 0.89311 1.17972 0.90738 0.92824 0.87145 1.21904 1.01695 0.97991 1.05119 1.21859 0.98216 0.87705 0.97288 1.67311 1.15676 1.29382 1.17633 1.17987 0.91514 0.83927 0.92749 1.42327 1.29470 1.03364 1.55288 1.15481 0.82238 0.79575 0.80517 1.90996 1.29948 1.84172 1.39915 1.47802 1.33628 1.05423 1.50522 1.22803 0.89094 0.99760 0.90547 1.23656 0.96939 0.96872 0.95310 0.83863 1.23710 0.81839 1.01573 0.96074 1.89502 1.30608 1.34348 1.76606 1.23726 0.94696 0.86591 0.95982 1.22578 0.99813 0.88733 0.99252 1.22031 0.79241 0.88835 0.73581 1.90731 1.31529 1.74382 1.44641 1.84509 1.49465 1.27176 1.70533 1.22010 1.00435 0.81641 0.93601 1.21318 1.07314 0.91590 1.13794 0.89728 0.86703 0.84612 0.74223 0.88112 0.88586 0.89814 0.87835 0.88126 0.89474 0.70192 0.89919 0.89276 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.72 10.94 21.84 0.24 -41.48 16 2 C 0.04 1.75 5.22 85.29 0.45 2.19 16 3 Si 0.99 36.27 29.58 68.60 2.03 38.30 16 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.48 -24.90 9.12 23.52 0.21 -24.68 16 8 H 0.09 4.29 7.89 -2.91 -0.02 4.27 16 9 C 0.12 6.55 5.58 -21.12 -0.12 6.44 16 10 C -0.24 -13.24 8.73 22.60 0.20 -13.04 16 11 C 0.10 5.26 11.10 84.27 0.94 6.19 16 12 N -0.58 -31.23 7.85 -194.26 -1.52 -32.75 16 13 C 0.37 17.85 7.42 132.76 0.99 18.83 16 14 N -0.65 -24.96 5.36 -322.37 -1.73 -26.69 16 15 C 0.72 27.81 8.53 179.06 1.53 29.34 16 16 O -0.58 -28.23 14.86 -3.98 -0.06 -28.29 16 17 N -0.63 -16.89 3.15 -825.78 -2.60 -19.50 16 18 C 0.10 1.68 6.33 86.65 0.55 2.23 16 19 C -0.11 -1.59 3.76 -8.88 -0.03 -1.63 16 20 H 0.14 1.69 6.96 -2.39 -0.02 1.68 16 21 C 0.04 0.74 7.06 72.46 0.51 1.25 16 22 O -0.39 -9.77 11.54 -148.98 -1.72 -11.49 16 23 C 0.07 1.26 6.74 72.45 0.49 1.75 16 24 C -0.10 -1.69 1.02 -51.15 -0.05 -1.74 16 25 C 0.52 7.46 7.10 71.23 0.51 7.97 16 26 O -0.52 -9.48 16.39 21.98 0.36 -9.12 16 27 O -0.50 -4.84 13.42 -51.39 -0.69 -5.53 16 28 C 0.15 3.20 6.03 86.51 0.52 3.73 16 29 C -0.31 -15.31 9.74 23.00 0.22 -15.08 16 30 H 0.29 13.39 8.29 -92.70 -0.77 12.62 16 31 H 0.12 6.35 6.28 -2.91 -0.02 6.33 16 32 H 0.14 6.49 8.06 -2.91 -0.02 6.47 16 33 H 0.42 12.15 7.13 -92.71 -0.66 11.48 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.42 6.30 -2.39 -0.02 1.40 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.64 7.53 -2.39 -0.02 1.62 16 38 H 0.10 2.05 7.50 -2.39 -0.02 2.03 16 39 H 0.09 1.25 7.99 -2.39 -0.02 1.23 16 40 H 0.44 0.22 9.10 -74.06 -0.67 -0.46 16 41 H 0.08 2.13 7.23 -2.38 -0.02 2.11 16 42 H 0.09 1.65 7.99 -2.38 -0.02 1.63 16 43 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -79.36 360.50 0.97 -78.38 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.23 Total: 34.43 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.90 Total: 23.74 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -5.62 Total: -120.42 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -2.11 Total: -54.43 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -79.36 0.97 -78.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.417 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds