Wall clock time and date at job start Wed Apr 1 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48497 * 109.47558 * 270.00527 * 3 2 1 5 5 H 1.48501 * 109.46979 * 30.00171 * 3 2 1 6 6 H 1.48496 * 109.47500 * 150.00047 * 3 2 1 7 7 C 1.40034 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99648 * 189.81654 * 7 2 1 9 9 C 1.41545 * 119.99684 * 9.80843 * 7 2 1 10 10 C 1.41169 * 120.99898 * 28.29835 * 9 7 2 11 11 C 1.37586 * 119.01640 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10994 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.22937 * 0.02562 * 12 11 10 14 14 N 1.39477 * 119.57603 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00440 * 5.39071 * 14 13 12 16 16 O 1.21280 * 119.99609 * 354.97567 * 15 14 13 17 17 C 1.50695 * 120.00470 * 174.98558 * 15 14 13 18 18 N 1.46500 * 109.47486 * 179.97438 * 17 15 14 19 19 C 1.45747 * 117.94586 * 269.73664 * 18 17 15 20 20 C 1.52737 * 110.58820 * 198.89024 * 19 18 17 21 21 C 1.53345 * 108.82187 * 309.60961 * 20 19 18 22 22 C 1.53071 * 108.42388 * 67.36910 * 21 20 19 23 23 H 1.09000 * 109.40279 * 71.22840 * 22 21 20 24 24 C 1.50694 * 109.33232 * 191.01866 * 22 21 20 25 25 O 1.20833 * 120.00195 * 0.37902 * 24 22 21 26 26 O 1.34232 * 120.00318 * 180.38730 * 24 22 21 27 27 C 1.33349 * 117.94791 * 89.99566 * 18 17 15 28 28 O 1.21282 * 118.24497 * 357.80159 * 27 18 17 29 29 C 1.38593 * 120.84495 * 359.97438 * 13 12 11 30 30 H 0.96993 * 120.00013 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.48964 * 0.04271 * 10 9 7 32 32 H 1.08000 * 119.44377 * 179.71666 * 11 10 9 33 33 H 0.97006 * 119.99427 * 185.39045 * 14 13 12 34 34 H 1.09001 * 109.46804 * 300.00049 * 17 15 14 35 35 H 1.09003 * 109.47159 * 59.99061 * 17 15 14 36 36 H 1.09005 * 109.30530 * 319.38576 * 19 18 17 37 37 H 1.08999 * 109.30083 * 78.76062 * 19 18 17 38 38 H 1.09005 * 109.66560 * 189.73199 * 20 19 18 39 39 H 1.09001 * 109.53322 * 69.41240 * 20 19 18 40 40 H 1.08997 * 109.67483 * 307.63996 * 21 20 19 41 41 H 1.08998 * 109.67894 * 187.10195 * 21 20 19 42 42 H 0.96694 * 117.00425 * 179.97438 * 26 24 22 43 43 H 1.07996 * 120.60541 * 180.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4888 2.0466 -1.4000 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0758 -1.2195 0.1589 9 6 1.3154 -2.4294 -0.2099 10 6 0.1285 -2.4687 -0.9732 11 6 -0.5115 -3.6736 -1.1504 12 7 -0.0338 -4.7847 -0.6194 13 6 1.0749 -4.8014 0.1054 14 7 1.5293 -6.0066 0.6406 15 6 0.9046 -7.1598 0.3305 16 8 -0.1062 -7.1407 -0.3394 17 6 1.4619 -8.4730 0.8164 18 7 0.6079 -9.5683 0.3503 19 6 -0.4945 -9.9869 1.2069 20 6 -0.9724 -11.3856 0.8222 21 6 -1.2176 -11.4258 -0.6910 22 6 0.1297 -11.2831 -1.4034 23 1 0.7081 -12.1974 -1.2707 24 6 -0.1056 -11.0484 -2.8733 25 8 -1.2334 -10.9937 -3.3034 26 8 0.9377 -10.9003 -3.7048 27 6 0.8911 -10.1233 -0.8287 28 8 1.8133 -9.6673 -1.4710 29 6 1.7890 -3.6368 0.3387 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2710 -1.5661 -1.4118 32 1 -1.4225 -3.7108 -1.7292 33 1 2.2951 -6.0146 1.2360 34 1 2.4705 -8.6065 0.4254 35 1 1.4916 -8.4742 1.9060 36 1 -0.1627 -9.9905 2.2452 37 1 -1.3214 -9.2850 1.0986 38 1 -1.8989 -11.6145 1.3489 39 1 -0.2098 -12.1174 1.0886 40 1 -1.8735 -10.6041 -0.9785 41 1 -1.6778 -12.3757 -0.9632 42 1 0.7370 -10.7522 -4.6390 43 1 2.6926 -3.6549 0.9299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:50 Heat of formation + Delta-G solvation = -113.138477 kcal Electronic energy + Delta-G solvation = -30194.439395 eV Core-core repulsion = 25819.020374 eV Total energy + Delta-G solvation = -4375.419022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38473 -40.03009 -39.22798 -37.69739 -36.87430 -36.10449 -34.57651 -34.16446 -33.55433 -30.66944 -30.53889 -29.23622 -27.42314 -25.97984 -25.79025 -22.94069 -22.29229 -21.82328 -21.50460 -19.86436 -18.86775 -18.38912 -17.91552 -17.35005 -17.17589 -16.89299 -16.52799 -15.84522 -15.31273 -15.18713 -14.92413 -14.65735 -14.46158 -14.19725 -14.02995 -13.88221 -13.78227 -13.39927 -13.24784 -12.89705 -12.69976 -12.37648 -12.24232 -11.94034 -11.77290 -11.66573 -11.53480 -11.39053 -11.34372 -11.25697 -10.97671 -10.78907 -10.37556 -10.05655 -9.92004 -9.76060 -9.65585 -9.38396 -8.82087 -8.00617 -7.71462 -7.02658 -6.76711 -4.62497 1.80751 2.33829 2.55213 2.67434 2.76160 2.92941 3.02721 3.05720 3.16549 3.44590 3.64721 3.86900 4.05710 4.20128 4.36411 4.47318 4.69419 4.78710 4.91945 4.99380 5.01786 5.11956 5.23612 5.31671 5.42158 5.50348 5.60275 5.68338 5.87589 5.93971 6.08872 6.34995 6.57058 6.58192 6.77498 6.91995 7.13760 7.14503 7.39315 7.49430 7.73612 7.76478 7.89515 7.92571 8.18170 8.46210 8.67191 8.75446 8.83648 9.68575 10.11928 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002297 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.771681 B =12189.230945 C =12549.587769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.146 3.854 10 C -0.218 4.218 11 C 0.101 3.899 12 N -0.551 5.551 13 C 0.348 3.652 14 N -0.660 5.660 15 C 0.482 3.518 16 O -0.469 6.469 17 C 0.090 3.910 18 N -0.579 5.579 19 C 0.107 3.893 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.093 4.093 23 H 0.139 0.861 24 C 0.500 3.500 25 O -0.508 6.508 26 O -0.494 6.494 27 C 0.527 3.473 28 O -0.521 6.521 29 C -0.299 4.299 30 H 0.282 0.718 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.406 0.594 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.410 0.590 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -20.952 4.228 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.241 4.241 11 C -0.050 4.050 12 N -0.270 5.270 13 C 0.120 3.880 14 N -0.307 5.307 15 C 0.265 3.735 16 O -0.337 6.337 17 C -0.037 4.037 18 N -0.311 5.311 19 C -0.015 4.015 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.115 4.115 23 H 0.157 0.843 24 C 0.340 3.660 25 O -0.396 6.396 26 O -0.304 6.304 27 C 0.313 3.687 28 O -0.396 6.396 29 C -0.325 4.325 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.240 0.760 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.269 0.731 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.118 -21.484 3.527 21.772 hybrid contribution 1.012 1.790 -0.039 2.057 sum 1.131 -19.694 3.488 20.032 Atomic orbital electron populations 1.69750 1.07561 1.29380 1.35223 1.25947 0.94868 1.01430 0.92049 0.86192 0.80277 0.80177 0.79364 1.19213 1.20198 1.18573 1.19548 0.95768 0.89985 1.43657 0.90138 1.17596 0.90698 0.91515 0.86412 1.22257 0.99990 0.97897 1.03961 1.21911 0.97907 0.88079 0.97076 1.67213 1.13520 1.30331 1.15915 1.18007 0.92084 0.83669 0.94254 1.43411 1.33274 1.05317 1.48689 1.21022 0.85328 0.85232 0.81924 1.90798 1.22195 1.86111 1.34630 1.21441 0.96492 0.85101 1.00696 1.46725 1.31131 1.33613 1.19623 1.21536 0.89684 0.96380 0.93927 1.21851 1.03006 0.96317 0.95724 1.21652 0.94065 1.05119 0.94124 1.21074 1.00562 1.00498 0.89339 0.84314 1.22456 0.82411 0.72186 0.88904 1.90744 1.24521 1.46403 1.77907 1.84619 1.38807 1.82914 1.24051 1.19212 0.84510 0.83882 0.81079 1.90821 1.30158 1.61758 1.56854 1.21254 1.05276 0.92821 1.13175 0.90682 0.85383 0.85958 0.75951 0.86599 0.87438 0.90038 0.90526 0.88704 0.90617 0.89231 0.89546 0.73120 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.15 10.83 55.55 0.60 -19.55 16 2 C 0.08 1.85 5.30 -17.34 -0.09 1.76 16 3 Si 0.92 18.23 29.57 -169.99 -5.03 13.20 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.86 9.13 -37.65 -0.34 -12.20 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.15 3.88 5.58 -106.55 -0.59 3.29 16 10 C -0.22 -5.76 8.75 -38.71 -0.34 -6.10 16 11 C 0.10 2.60 11.15 -17.68 -0.20 2.40 16 12 N -0.55 -14.38 7.85 -12.52 -0.10 -14.48 16 13 C 0.35 8.26 7.42 -154.70 -1.15 7.11 16 14 N -0.66 -12.09 5.39 -11.49 -0.06 -12.15 16 15 C 0.48 8.68 7.84 -10.99 -0.09 8.60 16 16 O -0.47 -10.70 14.68 5.56 0.08 -10.62 16 17 C 0.09 1.07 5.68 -5.20 -0.03 1.04 16 18 N -0.58 -6.86 2.31 -176.45 -0.41 -7.27 16 19 C 0.11 0.90 6.38 -4.58 -0.03 0.87 16 20 C -0.13 -0.77 6.01 -26.69 -0.16 -0.93 16 21 C -0.11 -0.95 4.78 -26.52 -0.13 -1.07 16 22 C -0.09 -0.97 2.87 -93.14 -0.27 -1.23 16 23 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 24 C 0.50 6.47 7.51 36.00 0.27 6.74 16 25 O -0.51 -7.71 16.54 -18.76 -0.31 -8.02 16 26 O -0.49 -5.91 12.39 -45.24 -0.56 -6.47 16 27 C 0.53 7.19 7.01 -11.87 -0.08 7.11 16 28 O -0.52 -9.09 14.86 -11.58 -0.17 -9.26 16 29 C -0.30 -7.24 9.73 -38.48 -0.37 -7.62 16 30 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 31 H 0.13 3.43 6.27 -52.48 -0.33 3.10 16 32 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 33 H 0.41 5.56 8.70 -40.82 -0.36 5.20 16 34 H 0.12 1.36 7.21 -51.93 -0.37 0.98 16 35 H 0.11 0.82 7.86 -51.93 -0.41 0.42 16 36 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 40 H 0.09 1.01 7.72 -51.93 -0.40 0.61 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 3.12 9.10 45.56 0.41 3.54 16 43 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -38.74 368.61 -8.37 -47.10 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.37 Total: 12.19 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -3.60 Total: 9.77 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.03 Total: -53.44 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.96 Total: -34.37 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.74 -8.37 -47.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.034 kcal (2) G-P(sol) polarization free energy of solvation -38.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds